View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_low_85 (Length: 251)

Name: NF11703_low_85
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_low_85
NF11703_low_85
[»] chr4 (40 HSPs)
chr4 (17-251)||(18537702-18537933)
chr4 (29-251)||(38928408-38928626)
chr4 (17-216)||(24446843-24447035)
chr4 (60-251)||(19095796-19095985)
chr4 (48-251)||(12396075-12396276)
chr4 (48-251)||(12401037-12401238)
chr4 (17-216)||(37313330-37313523)
chr4 (143-251)||(8756480-8756585)
chr4 (60-251)||(33415717-33415904)
chr4 (105-251)||(18535060-18535202)
chr4 (72-187)||(52043721-52043836)
chr4 (149-251)||(19322701-19322799)
chr4 (144-222)||(28453686-28453763)
chr4 (17-216)||(12101963-12102161)
chr4 (96-180)||(13543904-13543989)
chr4 (120-251)||(15032767-15032895)
chr4 (144-251)||(40999178-40999281)
chr4 (138-251)||(38270216-38270326)
chr4 (143-251)||(22802964-22803069)
chr4 (143-251)||(48486317-48486422)
chr4 (149-243)||(9863712-9863806)
chr4 (137-216)||(16186100-16186178)
chr4 (143-251)||(5100995-5101100)
chr4 (143-251)||(6764837-6764942)
chr4 (150-243)||(10112876-10112967)
chr4 (143-251)||(11434953-11435058)
chr4 (143-251)||(22801092-22801197)
chr4 (143-251)||(24888794-24888899)
chr4 (143-251)||(36378290-36378395)
chr4 (144-251)||(56030443-56030547)
chr4 (138-251)||(18409577-18409686)
chr4 (143-213)||(619714-619782)
chr4 (143-251)||(5198418-5198523)
chr4 (143-251)||(22044620-22044725)
chr4 (143-251)||(24878987-24879092)
chr4 (143-251)||(40637072-40637177)
chr4 (143-216)||(40091679-40091750)
chr4 (143-216)||(47274725-47274796)
chr4 (138-251)||(2891309-2891420)
chr4 (167-222)||(47151146-47151202)
[»] chr3 (43 HSPs)
chr3 (17-251)||(31151146-31151377)
chr3 (17-250)||(880681-880911)
chr3 (17-251)||(3314483-3314713)
chr3 (17-251)||(6231247-6231478)
chr3 (29-216)||(3306608-3306794)
chr3 (29-251)||(890001-890219)
chr3 (31-216)||(51675017-51675201)
chr3 (17-216)||(53590993-53591190)
chr3 (65-177)||(47149199-47149313)
chr3 (132-251)||(53597154-53597268)
chr3 (71-191)||(54691859-54691978)
chr3 (137-251)||(1673893-1674004)
chr3 (137-251)||(24177197-24177308)
chr3 (144-249)||(23636952-23637053)
chr3 (120-251)||(23633360-23633488)
chr3 (117-251)||(28761656-28761787)
chr3 (143-251)||(1626911-1627016)
chr3 (143-251)||(15780784-15780889)
chr3 (143-251)||(22114533-22114638)
chr3 (144-251)||(10958551-10958655)
chr3 (149-251)||(6561740-6561839)
chr3 (138-251)||(47701823-47701933)
chr3 (143-251)||(3859452-3859557)
chr3 (143-251)||(11170328-11170433)
chr3 (144-251)||(10956255-10956359)
chr3 (143-251)||(12268193-12268299)
chr3 (144-251)||(43421643-43421747)
chr3 (132-193)||(13419789-13419852)
chr3 (139-187)||(31021436-31021484)
chr3 (120-175)||(26762866-26762921)
chr3 (143-251)||(4308509-4308614)
chr3 (143-251)||(11163074-11163179)
chr3 (143-251)||(24979631-24979736)
chr3 (120-173)||(25635320-25635374)
chr3 (143-251)||(43423691-43423796)
chr3 (143-251)||(51943295-51943400)
chr3 (143-251)||(53917892-53917997)
chr3 (143-216)||(5522877-5522948)
chr3 (138-191)||(28180943-28180995)
chr3 (201-251)||(562002-562049)
chr3 (143-191)||(1313334-1313381)
chr3 (120-216)||(1618917-1619015)
chr3 (143-216)||(11007935-11008008)
[»] chr1 (38 HSPs)
chr1 (17-251)||(11457707-11457938)
chr1 (29-216)||(50079087-50079273)
chr1 (17-251)||(17318711-17318942)
chr1 (60-251)||(12302737-12302932)
chr1 (60-251)||(50076904-50077093)
chr1 (29-251)||(50307779-50307996)
chr1 (17-173)||(40133756-40133909)
chr1 (88-248)||(8347505-8347662)
chr1 (88-251)||(8349281-8349442)
chr1 (138-251)||(18800802-18800911)
chr1 (120-251)||(42922154-42922282)
chr1 (120-217)||(26613502-26613600)
chr1 (149-251)||(26520349-26520449)
chr1 (143-216)||(30738891-30738963)
chr1 (120-175)||(49958965-49959020)
chr1 (143-251)||(2617460-2617565)
chr1 (143-251)||(13215025-13215130)
chr1 (143-251)||(15823490-15823595)
chr1 (143-251)||(28998485-28998590)
chr1 (143-251)||(29004201-29004306)
chr1 (143-251)||(41646864-41646969)
chr1 (143-251)||(51749983-51750088)
chr1 (138-248)||(14183824-14183928)
chr1 (120-243)||(27916418-27916540)
chr1 (143-216)||(30790659-30790731)
chr1 (132-213)||(49495468-49495547)
chr1 (137-212)||(15669659-15669734)
chr1 (149-222)||(26332815-26332885)
chr1 (116-175)||(26979830-26979889)
chr1 (120-182)||(155621-155683)
chr1 (143-251)||(20302403-20302508)
chr1 (143-251)||(38925710-38925815)
chr1 (137-216)||(43104097-43104176)
chr1 (143-251)||(47451592-47451697)
chr1 (144-251)||(18307054-18307158)
chr1 (143-216)||(28207332-28207403)
chr1 (138-191)||(50248862-50248914)
chr1 (144-216)||(25251541-25251611)
[»] chr7 (29 HSPs)
chr7 (17-251)||(20137339-20137569)
chr7 (29-187)||(9680653-9680812)
chr7 (60-251)||(4296165-4296355)
chr7 (60-251)||(11355130-11355317)
chr7 (39-251)||(42223007-42223216)
chr7 (145-251)||(24817580-24817682)
chr7 (120-251)||(7188473-7188601)
chr7 (149-251)||(6348778-6348878)
chr7 (120-251)||(20091772-20091900)
chr7 (96-180)||(9678960-9679045)
chr7 (143-251)||(18567567-18567672)
chr7 (143-251)||(31435277-31435382)
chr7 (137-187)||(6048620-6048670)
chr7 (17-75)||(42222965-42223022)
chr7 (144-221)||(24465503-24465579)
chr7 (138-251)||(21678015-21678125)
chr7 (138-251)||(21679976-21680086)
chr7 (138-251)||(44724528-44724638)
chr7 (137-187)||(26210494-26210544)
chr7 (143-251)||(31156141-31156246)
chr7 (143-216)||(27306493-27306564)
chr7 (144-251)||(37412358-37412462)
chr7 (138-251)||(39146217-39146327)
chr7 (143-251)||(44518-44623)
chr7 (143-251)||(1049525-1049630)
chr7 (143-251)||(13099706-13099811)
chr7 (143-213)||(22392427-22392495)
chr7 (120-180)||(6067490-6067550)
chr7 (144-216)||(21990106-21990175)
[»] chr5 (27 HSPs)
chr5 (14-216)||(36208394-36208596)
chr5 (17-251)||(25903921-25904152)
chr5 (29-180)||(16092502-16092654)
chr5 (29-251)||(31472843-31473061)
chr5 (60-187)||(1189905-1190034)
chr5 (60-250)||(9020082-9020270)
chr5 (89-180)||(29748231-29748322)
chr5 (148-251)||(6661413-6661512)
chr5 (138-251)||(17072822-17072932)
chr5 (137-187)||(2144883-2144933)
chr5 (120-222)||(42770694-42770795)
chr5 (143-251)||(20507692-20507797)
chr5 (143-251)||(25921703-25921808)
chr5 (143-251)||(26098481-26098586)
chr5 (143-216)||(2818600-2818671)
chr5 (149-210)||(15143437-15143500)
chr5 (138-251)||(24126795-24126905)
chr5 (139-251)||(2174859-2174968)
chr5 (137-195)||(4754089-4754146)
chr5 (17-79)||(11962824-11962886)
chr5 (143-251)||(12556153-12556258)
chr5 (116-162)||(20053793-20053839)
chr5 (143-251)||(31542679-31542784)
chr5 (143-251)||(40221466-40221571)
chr5 (138-191)||(2723906-2723958)
chr5 (143-251)||(18596591-18596694)
chr5 (143-216)||(36402592-36402663)
[»] chr2 (23 HSPs)
chr2 (17-216)||(17848911-17849108)
chr2 (17-251)||(28196433-28196662)
chr2 (60-251)||(31732995-31733184)
chr2 (60-187)||(45239272-45239400)
chr2 (137-251)||(17897472-17897583)
chr2 (17-160)||(38414348-38414489)
chr2 (60-160)||(17848283-17848382)
chr2 (87-247)||(11578339-11578496)
chr2 (144-251)||(20146836-20146941)
chr2 (137-251)||(35107214-35107324)
chr2 (120-222)||(12342667-12342768)
chr2 (143-251)||(40032288-40032393)
chr2 (144-241)||(20146987-20147082)
chr2 (143-251)||(13910274-13910379)
chr2 (143-251)||(19504575-19504680)
chr2 (143-251)||(24162442-24162547)
chr2 (120-182)||(35028476-35028538)
chr2 (120-175)||(20589557-20589613)
chr2 (149-212)||(27583593-27583655)
chr2 (138-221)||(37963186-37963267)
chr2 (87-216)||(13828604-13828731)
chr2 (143-251)||(42923739-42923846)
chr2 (132-216)||(19007549-19007631)
[»] chr6 (28 HSPs)
chr6 (29-251)||(32447546-32447764)
chr6 (24-216)||(26945009-26945200)
chr6 (33-251)||(3390247-3390463)
chr6 (60-216)||(3233995-3234147)
chr6 (143-216)||(12186331-12186404)
chr6 (143-251)||(3028081-3028185)
chr6 (117-221)||(15346344-15346446)
chr6 (120-251)||(16455653-16455782)
chr6 (143-251)||(8995458-8995563)
chr6 (143-251)||(9019905-9020010)
chr6 (138-251)||(13057168-13057278)
chr6 (149-251)||(17012029-17012127)
chr6 (118-173)||(15366990-15367045)
chr6 (138-216)||(13039728-13039804)
chr6 (143-251)||(15541370-15541475)
chr6 (138-216)||(25466434-25466510)
chr6 (143-251)||(28241551-28241656)
chr6 (143-216)||(24338712-24338783)
chr6 (145-251)||(3632168-3632271)
chr6 (86-222)||(11138224-11138361)
chr6 (143-191)||(30729116-30729163)
chr6 (138-251)||(25477248-25477358)
chr6 (143-251)||(1072107-1072212)
chr6 (143-251)||(14507405-14507510)
chr6 (143-251)||(17852521-17852626)
chr6 (143-216)||(15532945-15533016)
chr6 (17-54)||(24543081-24543118)
chr6 (60-108)||(3396216-3396264)
[»] chr8 (25 HSPs)
chr8 (17-251)||(36865410-36865643)
chr8 (29-251)||(5622968-5623186)
chr8 (29-216)||(30480767-30480952)
chr8 (17-216)||(35872642-35872834)
chr8 (144-251)||(31035068-31035174)
chr8 (117-251)||(14419421-14419552)
chr8 (117-251)||(13858714-13858845)
chr8 (60-153)||(40877901-40877993)
chr8 (143-251)||(27911015-27911119)
chr8 (143-251)||(27957434-27957538)
chr8 (138-251)||(27107127-27107237)
chr8 (138-251)||(33541618-33541728)
chr8 (143-251)||(14807751-14807856)
chr8 (38-175)||(17847423-17847560)
chr8 (143-251)||(18810708-18810813)
chr8 (120-216)||(15185974-15186069)
chr8 (143-216)||(18812893-18812964)
chr8 (120-216)||(31162189-31162285)
chr8 (143-216)||(41382673-41382744)
chr8 (138-221)||(21482317-21482398)
chr8 (143-251)||(1225166-1225271)
chr8 (143-251)||(15072710-15072815)
chr8 (143-251)||(27826986-27827091)
chr8 (143-251)||(27829297-27829402)
chr8 (132-173)||(6375978-6376019)
[»] scaffold0004 (1 HSPs)
scaffold0004 (39-251)||(79711-79917)
[»] scaffold0468 (1 HSPs)
scaffold0468 (152-251)||(1862-1958)
[»] scaffold0224 (1 HSPs)
scaffold0224 (120-251)||(16049-16177)
[»] scaffold0057 (1 HSPs)
scaffold0057 (144-251)||(16878-16981)
[»] scaffold0045 (2 HSPs)
scaffold0045 (88-195)||(85131-85235)
scaffold0045 (17-65)||(85084-85131)
[»] scaffold0552 (1 HSPs)
scaffold0552 (143-251)||(1061-1166)
[»] scaffold0250 (1 HSPs)
scaffold0250 (143-251)||(2833-2938)
[»] scaffold0038 (1 HSPs)
scaffold0038 (143-251)||(41713-41818)
[»] scaffold0133 (1 HSPs)
scaffold0133 (149-218)||(4773-4841)
[»] scaffold0031 (1 HSPs)
scaffold0031 (145-251)||(79140-79243)
[»] scaffold0154 (1 HSPs)
scaffold0154 (143-251)||(11703-11808)
[»] scaffold0339 (1 HSPs)
scaffold0339 (143-216)||(3950-4021)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 18537933 - 18537702
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgta-ttttaagggtc 115  Q
    ||||| ||||||  |||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |||      
T  18537933 aattggcacttccaattcgtaaaaaatcaaagcacgatctagcaaaatcggagtacgattttgcgcggaagcataaaaataaaacgtatttttatgggca 18537834  T
Q  116 tgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttaga 215  Q
    ||||||||||||||| |||| | ||||||||||||||||||||||| ||||||||||| |||||| | |||||||| | | |||||||||||||||||||    
T  18537833 tgattttgttccaatttatgagtgatgcttttactataaatatagatcttgtatcaga-gtaaacattgagatagagggggctgaaaacaagggtttaga 18537735  T
Q  216 agtcaactagaaaaaactagggtttgtatagagttt 251  Q
    |   |||   || |||||||||||||||||||||||    
T  18537734 aacaaac---aacaaactagggtttgtatagagttt 18537702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 38928626 - 38928408
Alignment:
Q  29 tcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtctgattttgttcca 128  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||||||| |||||  || ||||||||||||||||||  ||| ||||||||||||||    
T  38928626 tcattcataaataatcgaagcacgatctggcaaaatcggagtacgattttgcgcagattcagaaaaataaaacgtatttt-tgggcctgattttgttcca 38928528  T
Q  129 atctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaa 227  Q
    || |||| ||||| ||||||||||||||||||   |||||| ||| |||||||| |||||||| | | ||| ||||||| |||||| ||| ||||   |     
T  38928527 atttatgagggattcttttactataaatataggctttgtattaga-gtaaaccttgagatagagggggctg-aaacaagagtttagaaaggcaac--aac 38928432  T
Q  228 aaaactagggtttgtatagagttt 251  Q
    ||||||||||||||||||||||||    
T  38928431 aaaactagggtttgtatagagttt 38928408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 24447035 - 24446843
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtc- 115  Q
    ||||||||||| ||||||||||||||||| |||| |     |||||||||||| ||||||| | ||||||| ||||||||||||| |||||| | || |     
T  24447035 aattgacactt-tcattcgtaaaaaatcggagcatg-----gcaaaatcggagcacgatttcgcgcagaagaataaaaataaaacatatttttatgggca 24446942  T
Q  116 tgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttaga 215  Q
    |||||| |||||||| |||| |||||||||||||||||||||||||  ||||||||| ||||||||| |||||||| | | ||| |||||||||||||||    
T  24446941 tgatttggttccaatttatgagggatgcttttactataaatatagacattgtatcag-tgtaaaccttgagatagagggggctg-aaacaagggtttaga 24446844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 60 - 251
Target Start/End: Original strand, 19095796 - 19095985
Alignment:
Q  60 aaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaa-gggtctgattttgttccaatctatgtgggatgcttttactataaatat 158  Q
    |||||||||| ||||||| | | ||||| |||||||||||||||||||| | ||| ||||||| |||||||| |||| ||||||||||||||||||||||    
T  19095796 aaaatcggagcacgatttcgcggagaagaataaaaataaaacgtatttttatgggcctgatttggttccaatttatgagggatgcttttactataaatat 19095895  T
Q  159 agagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttgtatagagttt 251  Q
    |||  ||||||||| ||||||||| |||||||| | | ||| |||||||||||||||| | ||||   | |||| |||||||||||||||||||    
T  19095896 agacattgtatcag-tgtaaaccttgagatagagggggctg-aaacaagggtttagaatgacaac--aacaaaattagggtttgtatagagttt 19095985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 48 - 251
Target Start/End: Complemental strand, 12396276 - 12396075
Alignment:
Q  48 gcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgta-ttttaagggtctgattttgttccaatctatgtgggatgcttt 146  Q
    ||||||||||| |||||| ||| |||| || ||||||||| |||||||||||||||| ||||| | | ||||||| |||||| | |||| ||||||||||    
T  12396276 gcacgatctagaaaaatcagagcacgaattcgtgcagaagaataaaaataaaacgtatttttatgagcctgatttggttccagtttatgagggatgcttt 12396177  T
Q  147 tactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttgtata 245  Q
    |||||||||||||||  |||||| | |||||||||| |||||||| | | ||| |||||||| ||||| ||| ||||   | ||||||||||||||||||    
T  12396176 tactataaatatagacattgtat-aaatgtaaaccttgagatagatggggctg-aaacaaggatttagaaaggcaac--aacaaaactagggtttgtata 12396081  T
Q  246 gagttt 251  Q
    ||||||    
T  12396080 gagttt 12396075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 48 - 251
Target Start/End: Complemental strand, 12401238 - 12401037
Alignment:
Q  48 gcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgta-ttttaagggtctgattttgttccaatctatgtgggatgcttt 146  Q
    ||||||||||| |||||| ||| |||| || ||||||||| |||||||||||||||| ||||| | | ||||||| |||||| | |||| ||||||||||    
T  12401238 gcacgatctagaaaaatcagagcacgaattcgtgcagaagaataaaaataaaacgtatttttatgagcctgatttggttccagtttatgagggatgcttt 12401139  T
Q  147 tactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttgtata 245  Q
    |||||||||||||||  |||||| | |||||||||| |||||||| | | ||| |||||||| ||||| ||| ||||   | ||||||||||||||||||    
T  12401138 tactataaatatagacattgtat-aaatgtaaaccttgagatagatggggctg-aaacaaggatttagaaaggcaac--aacaaaactagggtttgtata 12401043  T
Q  246 gagttt 251  Q
    ||||||    
T  12401042 gagttt 12401037  T

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Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 37313523 - 37313330
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtct 116  Q
    |||||||||||  |||||||||||  ||| |||||||||| |||||||||||||||||||||| | |||| |||||||||||||||||| ||  ||| ||    
T  37313523 aattgacactttccattcgtaaaa--tcggagcacgatctggcaaaatcggagtacgattttgcgtagaatcataaaaataaaacgtatctt-tgggcct 37313427  T
Q  117 gattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||| |||| | || |||||  |||||||||||||||||   |||||||| | |||||||| |||||||| | | ||| ||||||||||||||||    
T  37313426 gattttgtttcaatttttgagggat-tttttactataaatataggttttgtatca-aagtaaaccttgagatagagggggctg-aaacaagggtttagaa 37313330  T

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Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 8756585 - 8756480
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgt 242  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||||||| | |||||||||||||||||||||||||| ||  |||| |||| |||||    
T  8756585 cttttactataaatatagaccttgtatcaga-gtaaaccttgagatagaaggggctgaaaacaagggtttagaagtcaacaag--aaaattaggatttgt 8756489  T
Q  243 atagagttt 251  Q
    |||||||||    
T  8756488 atagagttt 8756480  T

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Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 251
Target Start/End: Complemental strand, 33415904 - 33415717
Alignment:
Q  60 aaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtctgattttgttccaatctatgtgggatgcttttactataaatata 159  Q
    |||||||||| ||||||||| |||||  || ||||||||||||||||||  ||| |||||||||||||||| |||| |||||  |||||||| |||||||    
T  33415904 aaaatcggagcacgattttgcgcagagtcagaaaaataaaacgtatttt-tgggcctgattttgttccaatttatgagggatttttttactacaaatata 33415806  T
Q  160 gagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttgtatagagttt 251  Q
    |   |||||||||| |||||||| |||||||| | | ||| |||||||||||||| |||  |||   | ||||||||||||||||||||||||    
T  33415805 ggctttgtatcaga-gtaaaccttgagatagagggggctg-aaacaagggtttagaaaggtaac--aacaaaactagggtttgtatagagttt 33415717  T

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Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 251
Target Start/End: Complemental strand, 18535202 - 18535060
Alignment:
Q  105 ttttaagggtctgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaac 204  Q
    ||||| ||| |||||||||||||||| |||| ||||||||||||| ||||||||||| || |  ||||| |||||||| |||||||| | | ||||||||    
T  18535202 ttttatgggcctgattttgttccaatttatgagggatgcttttacaataaatatagacctcgattcaga-gtaaaccttgagatagagggggctgaaaac 18535104  T
Q  205 aagggtttagaagtcaactagaaaaaactagggtttgtatagagttt 251  Q
    ||| ||||| ||   |||   || |||||||||||||||||||||||    
T  18535103 aagtgtttaaaaacaaac---aacaaactagggtttgtatagagttt 18535060  T

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Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 52043836 - 52043721
Alignment:
Q  72 cgattttgtgcagaagcataaaaataaaacgtattttaagggtctgat-tttgttccaatctatgtgggatgcttttactataaatatagagcttgtatc 170  Q
    ||||||||| ||| || |||||||||||||||||||| | || || |  ||||||||||| | |  ||||||||||||||||||||||||| ||||||||    
T  52043836 cgattttgt-cagcagaataaaaataaaacgtatttttatgggcttagatttgttccaattttttagggatgcttttactataaatatagaccttgtatc 52043738  T
Q  171 agatgtaaacctagaga 187  Q
    |||||||||||| ||||    
T  52043737 agatgtaaaccttgaga 52043721  T

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Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 19322701 - 19322799
Alignment:
Q  149 ctataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgtatagag 248  Q
    ||||||||||||| ||||||||||| |||||||| |||||||| | |  ||||| ||||||||||||||||||| ||  |||||||||||||||||||||    
T  19322701 ctataaatatagatcttgtatcaga-gtaaaccttgagatagagggggatgaaa-caagggtttagaagtcaacaag--aaaactagggtttgtatagag 19322796  T

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Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 28453686 - 28453763
Alignment:
Q  144 ttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaac 222  Q
    |||||||||||||||||| |||||||||||||| ||||| ||| ||| |||| ||||||||||||||||||||| ||||    
T  28453686 ttttactataaatatagaccttgtatcagatgtgaaccttgaggtag-agagtctgaaaacaagggtttagaagccaac 28453763  T

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Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 12101963 - 12102161
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtct 116  Q
    |||||||||||| |||||   |||||||  || ||||||| | ||||||| |||||||||||  || || ||||||||||||||||||||||  | ||      
T  12101963 aattgacacttcccattctggaaaaatcatagtacgatctgg-aaaatcgtagtacgattttacgctgatgcataaaaataaaacgtattttctgcgtga 12102061  T
Q  117 gattttgttccaatctatgtgggatg-cttttactataaatatagagcttgtatcagatgtaaacctagagataga-agagactgaaaacaagggtttag 214  Q
    ||||| |||||||| | |  |||||  ||||||||||||||||||| ||||||||||||  |||||| ||||||||  | | ||||||||||||||||||    
T  12102062 gattt-gttccaattttttagggatttcttttactataaatatagatcttgtatcagat-aaaaccttgagatagaggggggctgaaaacaagggtttag 12102159  T

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Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 13543904 - 13543989
Alignment:
Q  96 taaaacgtattttaa-gggtctgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaac 180  Q
    ||||||||||||| | |||| |||||| ||| |||| |||| |||||| |||||||||||||||||| ||||||||||||||||||    
T  13543904 taaaacgtatttttatgggtttgatttggtttcaatttatgagggatgtttttactataaatatagatcttgtatcagatgtaaac 13543989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 251
Target Start/End: Complemental strand, 15032895 - 15032767
Alignment:
Q  120 tttgttccaatct-atgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagt 218  Q
    ||||||||||| | ||| ||||| |||||||||||||||||||  | ||| |||| |||||||| |||||| | | | |||||| |||||||||||||||    
T  15032895 tttgttccaattttatgagggatacttttactataaatatagacttggtaccaga-gtaaaccttgagataaagggggctgaaa-caagggtttagaagt 15032798  T
Q  219 caactagaaaaaactagggtttgtatagagttt 251  Q
    |||| ||  ||||||||||||||||||||||||    
T  15032797 caacaag--aaaactagggtttgtatagagttt 15032767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 40999281 - 40999178
Alignment:
Q  144 ttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgta 243  Q
    |||||||||||||||| | ||| ||||||| |||||||| ||| |||| ||| ||||||||||||||||||| |||||| ||  |||||||||| |||||    
T  40999281 ttttactataaatataaaccttatatcaga-gtaaaccttgaggtaga-gagtctgaaaacaagggtttagacgtcaacaag--aaaactaggggttgta 40999186  T
Q  244 tagagttt 251  Q
    ||||||||    
T  40999185 tagagttt 40999178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 38270326 - 38270216
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagg 236  Q
    |||| |||||||||||||||||||  ||||||||| ||||||||| |||||||||||| ||| |||||||||||||| ||| ||||   | |||||||||    
T  38270326 ggattcttttactataaatatagacattgtatcag-tgtaaaccttgagatagaagaggctg-aaacaagggtttagaaaggcaac--aacaaaactagg 38270231  T
Q  237 gtttgtatagagttt 251  Q
    |||||| ||||||||    
T  38270230 gtttgtgtagagttt 38270216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 22803069 - 22802964
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||||||| | | ||| |||||||||||||||| | ||||   | ||||||||||||||    
T  22803069 cttttactataaatatagaccttgtatcaga-gtaaactttgagatagagggggctg-aaacaagggtttagaatggcaac--aacaaaactagggtttg 22802974  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  22802973 tatagagttt 22802964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 48486317 - 48486422
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||||||| | | ||| |||||||||||||||| | ||||   | ||||||||||||||    
T  48486317 cttttactataaatatagaccttgtatcaga-gtaaactttgagatagagggggctg-aaacaagggtttagaatggcaac--aacaaaactagggtttg 48486412  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  48486413 tatagagttt 48486422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 9863712 - 9863806
Alignment:
Q  149 ctataaatatagagcttgtatcagatgtaaacctagagatagaagaga-ctg-aaaacaagggtttagaagtcaactagaaaaaactagggtttgta 243  Q
    ||||||||||||| ||||||||||||| |||||| ||||||| ||||| ||| |||||||||||||||||| |||  |  |||||||||||||||||    
T  9863712 ctataaatatagaccttgtatcagatg-aaaccttgagatagtagagagctgaaaaacaagggtttagaagccaa-aaacaaaaactagggtttgta 9863806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 16186178 - 16186100
Alignment:
Q  137 gggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||| ||||||||||||||||| | ||||||||||| |||||||| |||| ||| | | || |||||||||||||||||    
T  16186178 gggatacttttactataaatataaaccttgtatcaga-gtaaaccttgagagagagggggctaaaaacaagggtttagaa 16186100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 5100995 - 5101100
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| |||| |||||  |||||||| |||||||| | ||||| |||||| ||||||||| | ||||   | ||||||||||||||    
T  5100995 cttttactataaatatagaccttgaatcag-ggtaaaccttgagatagaggggactg-aaacaaaggtttagaatgacaac--aacaaaactagggtttg 5101090  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  5101091 tatagagttt 5101100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 6764837 - 6764942
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    |||| |||||||||||||| ||||||||||| | |||| | |||||||||| | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  6764837 ctttcactataaatatagaccttgtatcaga-gcaaactttgagatagaaggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 6764932  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  6764933 tatagagttt 6764942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 10112876 - 10112967
Alignment:
Q  150 tataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgta 243  Q
    ||||||||||||  ||||||||||||||||||| |||| ||| |    |||||||||||||||||||| ||||    |||||||||||||||||    
T  10112876 tataaatatagacattgtatcagatgtaaacctcgagagagagggagttgaaaacaagggtttagaagccaac--acaaaaactagggtttgta 10112967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 11434953 - 11435058
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  11434953 cttttactataaatatagaccttgtatcaga-gcaaacttggagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 11435048  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  11435049 tatagagttt 11435058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 22801197 - 22801092
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||||||| | | ||| |||||||||||||||| | ||||   | |||||||| |||||    
T  22801197 cttttactataaatatagaccttgtatcaga-gtaaactttgagatagagggggctg-aaacaagggtttagaatgacaac--aacaaaactagagtttg 22801102  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  22801101 tatagagttt 22801092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 24888794 - 24888899
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| | |||| |||||||||| | | ||| |||||||||||||| ||| ||||   | |||||||||| |||    
T  24888794 cttttactataaatatagaccttgtatcaga-gcaaacttagagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggattg 24888889  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  24888890 tatagagttt 24888899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 36378290 - 36378395
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    |||||||||||||||||||  ||||||||||  ||||||| |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  36378290 cttttactataaatatagactttgtatcaga-ataaaccttgagatagacggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 36378385  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  36378386 tatagagttt 36378395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 251
Target Start/End: Original strand, 56030443 - 56030547
Alignment:
Q  144 ttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttgt 242  Q
    |||||||||||||||||   |||||||||| |||||||| |||||||||| | ||| |||||||||||||||| | ||||   | |||||||| ||||||    
T  56030443 ttttactataaatataggctttgtatcaga-gtaaaccttgagatagaaggggctg-aaacaagggtttagaatgacaac--aacaaaactagagtttgt 56030538  T
Q  243 atagagttt 251  Q
    |||||||||    
T  56030539 atagagttt 56030547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 18409686 - 18409577
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagg 236  Q
    |||| |||||||||||||||||||  ||||||||| |||||||   ||||||| |||| ||| |||||||||||||| ||| ||||   | |||||||||    
T  18409686 ggattcttttactataaatatagaatttgtatcag-tgtaaacaatgagatag-agaggctg-aaacaagggtttagaaaggcaac--aacaaaactagg 18409592  T
Q  237 gtttgtatagagttt 251  Q
    |||||||||||||||    
T  18409591 gtttgtatagagttt 18409577  T

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Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 619782 - 619714
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggttta 213  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||||||| | | ||| |||||||||||||    
T  619782 cttttactataaatatagaccttgtatcaga-gtaaactttgagatagagggggctg-aaacaagggttta 619714  T

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Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 5198418 - 5198523
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||| ||||    
T  5198418 cttttactataaatatagaccttgtatcaga-gcaaactttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactaggatttg 5198513  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  5198514 tatagagttt 5198523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 22044725 - 22044620
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||  ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  22044725 cttttactataaatataggccttgtatcaga-gcaaacttggagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 22044630  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  22044629 tatagagttt 22044620  T

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Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 24878987 - 24879092
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| |||||||| || |||||| | |||||||| | | ||| |||| ||||||||| ||| ||||   | ||||||||||||||    
T  24878987 cttttactataaatatagaccttgtatccga-gtaaacttggagatagagggggctg-aaactagggtttagaaagacaac--aacaaaactagggtttg 24879082  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  24879083 tatagagttt 24879092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 40637072 - 40637177
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    |||| |||||||||||||| ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  40637072 ctttcactataaatatagaccttgtatcaga-gcaaacttggagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 40637167  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  40637168 tatagagttt 40637177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 40091750 - 40091679
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||||||||||||| ||||||||| | |||||| | |||||||| | | ||| ||||||||||||||||    
T  40091750 cttttactataaatatagaccttgtatca-aagtaaactttgagatagagggggctg-aaacaagggtttagaa 40091679  T

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Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 47274725 - 47274796
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||||||||||||| |||||||||||  ||||| | |||||||| | | ||| ||||||||||||||||    
T  47274725 cttttactataaatatagaccttgtatcaga-ctaaactttgagatagagggggctg-aaacaagggtttagaa 47274796  T

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Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 2891309 - 2891420
Alignment:
Q  138 ggatgcttttactataaatatagagcttgt-atcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactag 235  Q
    |||| |||||||||||||||||||  |||| ||||| |||||||||  ||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||    
T  2891309 ggattcttttactataaatatagacattgtaatcag-tgtaaaccttaagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactag 2891404  T
Q  236 ggtttgtatagagttt 251  Q
    ||||||||||||||||    
T  2891405 ggtttgtatagagttt 2891420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 47151202 - 47151146
Alignment:
Q  167 tatcagatgtaaacctagagatagaagaga-ctgaaaacaagggtttagaagtcaac 222  Q
    |||||||||||||||| |||| |  ||||| ||||||||||||||||||||| ||||    
T  47151202 tatcagatgtaaaccttgagagattagagagctgaaaacaagggtttagaagccaac 47151146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 31151146 - 31151377
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtct 116  Q
    ||||| |||||| ||||||||||| |||| |||| ||||| ||||||| |||| || |||| | ||||||||||||||||||||| | ||||| ||| ||    
T  31151146 aattggcacttcccattcgtaaaatatcggagcatgatctggcaaaattggagcacaatttcgcgcagaagcataaaaataaaacat-ttttatgggcct 31151244  T
Q  117 gattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
     |||||||| |||| |||| |||||||||||||||||||||||||  ||||||||||||||||||| |||||||| | | ||||||||||||||||||||    
T  31151245 tattttgttacaatttatgagggatgcttttactataaatatagactttgtatcagatgtaaacctcgagatagagggggctgaaaacaagggtttagaa 31151344  T
Q  217 gtcaactagaaaaaactagggtttgtatagagttt 251  Q
     ||||| ||  ||||||||||||||||||||||||    
T  31151345 atcaacaag--aaaactagggtttgtatagagttt 31151377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 880911 - 880681
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgta-ttttaagggtc 115  Q
    ||||||||||| ||||||||||||||||| || ||||||| |||||||||| | ||||||| | ||||||| |||||||||||||||| ||||| ||| |    
T  880911 aattgacactt-tcattcgtaaaaaatcggagtacgatctggcaaaatcggcgcacgatttcgcgcagaagaataaaaataaaacgtatttttatgggcc 880813  T
Q  116 tgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttaga 215  Q
    |||||| |||||||| |||| |||||||||||||||||||||||||  ||||||||| ||||||||| |||||||| | | ||| ||||||| |||||||    
T  880812 tgatttggttccaatttatgagggatgcttttactataaatatagacattgtatcag-tgtaaaccttgagatagaggggtctg-aaacaagagtttaga 880715  T
Q  216 a-gtcaactagaaaaaactagggtttgtatagagtt 250  Q
    | | ||||   | |||||||||||||||||||||||    
T  880714 atggcaac--aacaaaactagggtttgtatagagtt 880681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 3314483 - 3314713
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtct 116  Q
    ||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |||||||   ||||||| |||||||||||| |||||||| ||| ||    
T  3314483 aattgacactt-tcattcgtaaaaaatcggagcacgatctggcaaaatcggagcacgatttcacgcagaagaataaaaataaaaggtattttatgggcct 3314581  T
Q  117 gattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-a 215  Q
    ||||| | |||||| |||| |||||||||||||||||||||||||  ||||||||| ||||||||| |||||||| | | ||| ||| |||||||||| |    
T  3314582 gatttgggtccaatttatgagggatgcttttactataaatatagatattgtatcag-tgtaaaccttgagatagagggggctg-aaataagggtttagaa 3314679  T
Q  216 agtcaactagaaaaaactagggtttgtatagagttt 251  Q
    ||  |||   | ||||||||||||||||||||||||    
T  3314680 aggtaac--aacaaaactagggtttgtatagagttt 3314713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 6231247 - 6231478
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgta-ttttaagggtc 115  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||||| |||| ||||||| | ||||||| |||||||||||||||| ||||| ||| |    
T  6231247 aattgacactt-tcattcgtaaaaaatcggagcacgatctggcaaaattggagcacgatttcgcgcagaagaataaaaataaaacgtatttttatgggcc 6231345  T
Q  116 tgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag- 214  Q
    |||||| |||||||| |||| |||||| ||||||||||||||||||  ||||||||| |||||| || ||||||||   | ||| |||||||| |||||     
T  6231346 tgatttggttccaatttatgagggatgattttactataaatatagacattgtatcag-tgtaaatcttgagatagagcgggctg-aaacaaggatttaga 6231443  T
Q  215 aagtcaactagaaaaaactagggtttgtatagagttt 251  Q
    ||| ||||   | ||||||||||||||||||||||||    
T  6231444 aaggcaac--aacaaaactagggtttgtatagagttt 6231478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 3306608 - 3306794
Alignment:
Q  29 tcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgta-ttttaagggtctgattttgttcc 127  Q
    ||||||||||||||||| |||||||||| |||||||||||| ||||||| | ||||||| ||||||||||||| || ||||| ||| ||||||| |||||    
T  3306608 tcattcgtaaaaaatcggagcacgatctggcaaaatcggagcacgatttcgcgcagaagaataaaaataaaacatagttttatgggcctgatttggttcc 3306707  T
Q  128 aatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||| |||| | |||| ||||||||||||||||||  ||||||||| |||||||||||||||| | | | ||| ||||||||||||||||    
T  3306708 aatttatgagagatgtttttactataaatatagacattgtatcag-tgtaaacctagagatatagggggctg-aaacaagggtttagaa 3306794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 890219 - 890001
Alignment:
Q  29 tcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaa-gggtctgattttgttcc 127  Q
    ||||||||||||||||  |||||||| | | ||||||  || ||||||||| ||||||| ||||||| |||| ||||||| | ||| ||||||| |||||    
T  890219 tcattcgtaaaaaatcagagcacgatatggaaaaatcatagcacgattttgcgcagaagaataaaaacaaaatgtatttttatgggcctgatttggttcc 890120  T
Q  128 aatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactaga 226  Q
    ||| |||| |||||||||||||||||||||||||  ||||||||| ||||||||| |||||||| ||  ||| |||||||||||||||| | ||||        
T  890119 aatttatgagggatgcttttactataaatatagatattgtatcag-tgtaaaccttgagatagaggaagctg-aaacaagggtttagaatggcaac---- 890026  T
Q  227 aaaaactagggtttgtatagagttt 251  Q
    |||| ||||||||||||||||||||    
T  890025 aaaacctagggtttgtatagagttt 890001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 51675201 - 51675017
Alignment:
Q  31 attcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgta-ttttaagggtctgattttgttccaa 129  Q
    ||||||||||||||| |||||||||| |||||||| ||| |||||||   | ||||| |||||||||||||||| |||||  |||||||||| |||||||    
T  51675201 attcgtaaaaaatcggagcacgatctggcaaaatcagagcacgatttcacgtagaagaataaaaataaaacgtatttttataggtctgatttggttccaa 51675102  T
Q  130 tctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    | |||| |||||| ||||||||||||||||||  |||||||| |||||||| | |||||||| | | ||| ||||||||||||||||    
T  51675101 tttatgagggatgtttttactataaatatagacgttgtatca-atgtaaacgttgagatagagggggctg-aaacaagggtttagaa 51675017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 53590993 - 53591190
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgta-ttttaagggtc 115  Q
    ||||||||||| |||||||||||| |||| || | ||||| | |||||||||| | ||||| | ||||||| |||||||||||||||| ||||| ||| |    
T  53590993 aattgacactt-tcattcgtaaaacatcggaggatgatctggaaaaatcggagcatgatttcgcgcagaagaataaaaataaaacgtatttttatgggcc 53591091  T
Q  116 tgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttaga 215  Q
    |||||| ||||| || |||| || ||||||||||||||||||||||  |||||| || ||||||||| |||||||| ||| ||| ||||||| |||||||    
T  53591092 tgatttggttccgatttatgaggaatgcttttactataaatatagacattgtataag-tgtaaaccttgagatagaggaggctg-aaacaagagtttaga 53591189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 177
Target Start/End: Complemental strand, 47149313 - 47149199
Alignment:
Q  65 cggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtct-gattttgttccaatctatgtgggat-gcttttactataaatatagag 162  Q
    ||||||||||||| | ||||||| |||||||||||||||||||| | || || ||||| |||||||| |||| ||||| ||||||||||||||||||||     
T  47149313 cggagtacgatttcgcgcagaagaataaaaataaaacgtatttttatgggcttgatttggttccaatttatgagggattgcttttactataaatatagac 47149214  T
Q  163 cttgtatcagatgta 177  Q
    |||||||||||||||    
T  47149213 cttgtatcagatgta 47149199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 251
Target Start/End: Original strand, 53597154 - 53597268
Alignment:
Q  132 tatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaa 231  Q
    |||| ||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||| | || || ||||||||||||| |||||||| ||  ||||    
T  53597154 tatgagggatacttttactataaatatagaccttgtatcaga-gtaaaccttgagatagagggga-tg-aaacaagggtttataagtcaacaag--aaaa 53597248  T
Q  232 ctagggtttgtatagagttt 251  Q
    |||||| |||||||||||||    
T  53597249 ctaggggttgtatagagttt 53597268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 54691978 - 54691859
Alignment:
Q  71 acgattttgtgcagaagcataaaaataaaacgtattttaagggtctgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatc 170  Q
    ||||||||| |||||  |||||||||||||| ||||||  ||| || ||||||||||||| ||||  |||| ||||||||||||||||||   |||||||    
T  54691978 acgattttgcgcagagtcataaaaataaaacatattttttgggcctaattttgttccaatttatgaaggattcttttactataaatataggctttgtatc 54691879  T
Q  171 agatgtaaacctagagataga 191  Q
    ||| ||||||||  |||||||    
T  54691878 aga-gtaaaccttaagataga 54691859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 251
Target Start/End: Original strand, 1673893 - 1674004
Alignment:
Q  137 gggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagg 236  Q
    ||||| ||||||||||||||||||| ||||||||| | |||||||| ||  ||| |||| ||||||| |||||||||||||| ||| ||  ||||||||     
T  1673893 gggatacttttactataaatatagaacttgtatcaaaagtaaaccttgatgtag-agagtctgaaaataagggtttagaagttaacaag--aaaactagt 1673989  T
Q  237 gtttgtatagagttt 251  Q
    ||||||||| |||||    
T  1673990 gtttgtatatagttt 1674004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 251
Target Start/End: Original strand, 24177197 - 24177308
Alignment:
Q  137 gggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagg 236  Q
    ||||| |||||| |||||||||||| ||||||||| | |||||| | ||| |||| | | ||||||||||| ||||||| |||||| ||||||  |||||    
T  24177197 gggatacttttattataaatatagaccttgtatcata-gtaaacattgagctagagggggctgaaaacaagagtttagatgtcaacaagaaaa--ctagg 24177293  T
Q  237 gtttgtatagagttt 251  Q
    |||||||||||||||    
T  24177294 gtttgtatagagttt 24177308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 249
Target Start/End: Original strand, 23636952 - 23637053
Alignment:
Q  144 ttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgta 243  Q
    ||||| |||||||||| |  |||||||||| |||||||| |||||||| ||| || |||||||||||||||||| |||| ||  ||||||||||||||||    
T  23636952 ttttaatataaatatatactttgtatcaga-gtaaaccttgagatagaggaggct-aaaacaagggtttagaagccaacaag--aaaactagggtttgta 23637047  T
Q  244 tagagt 249  Q
    ||||||    
T  23637048 tagagt 23637053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 251
Target Start/End: Original strand, 23633360 - 23633488
Alignment:
Q  120 tttgttccaatct-atgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagt 218  Q
    ||||||||||| | ||| ||||| |||||||||||||||||||  |||||||||| |||||||| ||||||||   | || ||||||||| ||||||||     
T  23633360 tttgttccaattttatgagggatacttttactataaatatagactttgtatcaga-gtaaaccttgagatagagagggct-aaaacaaggatttagaagc 23633457  T
Q  219 caactagaaaaaactagggtttgtatagagttt 251  Q
    |||| ||||||  ||||||||||||||| ||||    
T  23633458 caacaagaaaa--ctagggtttgtatagtgttt 23633488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 251
Target Start/End: Complemental strand, 28761787 - 28761656
Alignment:
Q  117 gattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-a 215  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||  ||| |||||| |||||||| |||||||| | |  || |||||||||||||| |    
T  28761787 gattttgttccaatttatgagggatacttttactataaatatagactttgcatcaga-gtaaaccttgagatagagggggttg-aaacaagggtttagaa 28761690  T
Q  216 agtcaactagaaaaaactagggtttgtatagagttt 251  Q
    || ||||   | |||||||||||||||||| |||||    
T  28761689 agacaac--aacaaaactagggtttgtatatagttt 28761656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 1627016 - 1626911
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    |||||||||||||||||||  ||||||||| ||||||||| |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  1627016 cttttactataaatatagacattgtatcag-tgtaaaccttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 1626921  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  1626920 tatagagttt 1626911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 15780784 - 15780889
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||||||| | | ||| |||||||||||||||| | ||||   | ||||||||||||||    
T  15780784 cttttactataaatatagaccttgtatcaga-gtaaacttggagatagagggggctg-aaacaagggtttagaatggcaac--aacaaaactagggtttg 15780879  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  15780880 tatagagttt 15780889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 22114638 - 22114533
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| | |||| | |||||||||| | ||| |||||||||||||| ||| |||  | | ||||||||||||||    
T  22114638 cttttactataaatatagaccttgtatcaga-gcaaacttggagatagaaggggctg-aaacaagggtttagaaaggcaa--aaacaaaactagggtttg 22114543  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  22114542 tatagagttt 22114533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 10958655 - 10958551
Alignment:
Q  144 ttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttgt 242  Q
    |||||||||||||||||| ||||||||||| |||||| || ||||||| | | ||| |||||||||||||||| | ||||   | |||||||||||||||    
T  10958655 ttttactataaatatagaccttgtatcaga-gtaaacataaagatagagggggctg-aaacaagggtttagaatggcaac--aacaaaactagggtttgt 10958560  T
Q  243 atagagttt 251  Q
    |||||||||    
T  10958559 atagagttt 10958551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 6561740 - 6561839
Alignment:
Q  149 ctataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttgtataga 247  Q
    ||||||||||||| ||||||||||| |||||||| |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||||||||    
T  6561740 ctataaatatagaccttgtatcaga-gtaaaccttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttgtataga 6561835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 47701933 - 47701823
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagg 236  Q
    |||| |||||||||||||||||||  ||||||||| ||||||||| |||||| | | | ||| |||||||||||||| ||| ||||   | |||||||||    
T  47701933 ggattcttttactataaatatagacattgtatcag-tgtaaaccttgagataaagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagg 47701838  T
Q  237 gtttgtatagagttt 251  Q
    |||||||||||||||    
T  47701837 gtttgtatagagttt 47701823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 3859452 - 3859557
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  3859452 cttttactataaatatagaccttgtatcaga-gcaaacttggagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 3859547  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  3859548 tatagagttt 3859557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 11170328 - 11170433
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  11170328 cttttactataaatatagaccttgtatcaga-gcaaactttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 11170423  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  11170424 tatagagttt 11170433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 10956359 - 10956255
Alignment:
Q  144 ttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttgt 242  Q
    |||||||||||||||||| ||||||||||| |||||| |  ||||||| | | ||| |||||||||||||||| | ||||   | |||||||||||||||    
T  10956359 ttttactataaatatagaccttgtatcaga-gtaaacatgaagatagagggggctg-aaacaagggtttagaatggcaac--aacaaaactagggtttgt 10956264  T
Q  243 atagagttt 251  Q
    |||||||||    
T  10956263 atagagttt 10956255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 12268299 - 12268193
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||||||| |   ||| ||||||| |||||| ||| |||| |  |||||||||||||||    
T  12268299 cttttactataaatatagaacttgtatcaga-gtaaactttgagatagagggagctg-aaacaagagtttagaaagacaac-aacaaaaactagggtttg 12268203  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  12268202 tatagagttt 12268193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 43421747 - 43421643
Alignment:
Q  144 ttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttgt 242  Q
    ||||||||||||||||||  ||||||||| ||||||||| |||||||||| |  || |||||||||||||| ||| ||||   | |||||||||||||||    
T  43421747 ttttactataaatatagacattgtatcag-tgtaaaccttgagatagaaggggttg-aaacaagggtttagaaaggcaac--aacaaaactagggtttgt 43421652  T
Q  243 atagagttt 251  Q
    |||| ||||    
T  43421651 atagtgttt 43421643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 13419789 - 13419852
Alignment:
Q  132 tatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacct--agagatagaag 193  Q
    |||| ||||| ||||||||||||||||||| ||| ||||||||||||| ||  |||||||||||    
T  13419789 tatgagggatacttttactataaatatagaccttatatcagatgtaaaacttgagagatagaag 13419852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 31021484 - 31021436
Alignment:
Q  139 gatgcttttactataaatatagagcttgtatcagatgtaaacctagaga 187  Q
    |||| |||||||||||||||||| ||||||||| |||||||||| ||||    
T  31021484 gatggttttactataaatatagaccttgtatcaaatgtaaaccttgaga 31021436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 26762866 - 26762921
Alignment:
Q  120 tttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatg 175  Q
    ||||||||||| | |  ||||||||||||||||||||||| | |||||||||||||    
T  26762866 tttgttccaattttttagggatgcttttactataaatataaaccttgtatcagatg 26762921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 4308614 - 4308509
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    |||| |||||||||||||| ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  4308614 ctttcactataaatatagaccttgtatcaga-gcaaactttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 4308519  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  4308518 tatagagttt 4308509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 11163074 - 11163179
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||| ||||||||||| ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  11163074 cttttacgataaatatagaccttgtatcaga-gcaaactttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 11163169  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  11163170 tatagagttt 11163179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 24979631 - 24979736
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    |||| |||||||||||| | ||||||||||| |||||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  24979631 ctttcactataaatatataccttgtatcaga-gtaaactttgagatagagggggctg-aaacaagggtttagaaagacaac--aacaaaactagggtttg 24979726  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  24979727 tatagagttt 24979736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 25635320 - 25635374
Alignment:
Q  120 tttgttccaatct-atgtgggatgcttttactataaatatagagcttgtatcaga 173  Q
    ||||||||||| | ||| |||||||||||||||||||||||||  ||||||||||    
T  25635320 tttgttccaattttatgagggatgcttttactataaatatagactttgtatcaga 25635374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 43423796 - 43423691
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    |||||||||||||||||||  ||||||||  ||||||||| |||| ||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  43423796 cttttactataaatatagacattgtatca-ctgtaaaccttgagaaagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 43423701  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  43423700 tatagagttt 43423691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 51943295 - 51943400
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| |||| |||||| |||||||| |||||||| |   ||| |||||| ||||||| ||| ||||   | ||||||||||||||    
T  51943295 cttttactataaatatagaccttgaatcaga-gtaaacctggagatagagggtgctg-aaacaaaggtttagaaaggcaac--aacaaaactagggtttg 51943390  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  51943391 tatagagttt 51943400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 53917997 - 53917892
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| |||| ||||||| ||||||| ||||| || | | ||| |||||| ||||||||| | ||||   | ||||||||||||||    
T  53917997 cttttactataaatatagaccttgaatcagat-taaaccttgagatggagggggctg-aaacaatggtttagaatgacaac--aacaaaactagggtttg 53917902  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  53917901 tatagagttt 53917892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 5522948 - 5522877
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||||||||||||| ||||||||||| | |||| | |||||||| | | ||| ||||||||||||||||    
T  5522948 cttttactataaatatagaccttgtatcaga-gcaaacttggagatagagggggctg-aaacaagggtttagaa 5522877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 28180943 - 28180995
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagataga 191  Q
    |||| |||||||||||||||||||  ||||||||| ||||||||| ||||||||    
T  28180943 ggattcttttactataaatatagacattgtatcag-tgtaaaccttgagataga 28180995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 562049 - 562002
Alignment:
Q  201 aaacaagggtttagaagtcaactagaaaaaactagggtttgtatagagttt 251  Q
    ||||||||||||||||||||||   |  |||||||||||||||||||||||    
T  562049 aaacaagggtttagaagtcaac---atgaaactagggtttgtatagagttt 562002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 1313334 - 1313381
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagataga 191  Q
    ||||||||||||||||||| |||| |||||| |||||||| ||||||||    
T  1313334 cttttactataaatatagaccttgaatcaga-gtaaaccttgagataga 1313381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 1619015 - 1618917
Alignment:
Q  120 tttgttccaatct-atgtgggatgcttttactataaatatagagcttgtatcagatgtaaacct--agagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||||| | ||| ||||| |||| |||||||||||||| |||||| || | ||||||||  ||||| ||| | | ||||||||||||||||||||    
T  1619015 tttgttccaattttatgagggatactttgactataaatatagaccttgtaccata-gtaaaccttgagagacagagggggctgaaaacaagggtttagaa 1618917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 11008008 - 11007935
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacct--agagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||||||||||| | ||||||||||||| ||||||  |||| ||| |||| |||||| |||||||||||||    
T  11008008 cttttactataaatataaaccttgtatcagatg-aaaccttgagaggtag-agagtctgaaagcaagggtttagaa 11007935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 11457938 - 11457707
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgta-ttttaagggtc 115  Q
    ||||||||||| ||||| ||||||||| | ||||||||||||||||||||||| ||||||| | ||||||| |||||||||||||||| ||||| |||||    
T  11457938 aattgacactt-tcatttgtaaaaaattggagcacgatctagcaaaatcggagcacgatttcgcgcagaagaataaaaataaaacgtatttttatgggtc 11457840  T
Q  116 tgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag- 214  Q
    |||||| |||||||| |||| |||||||||||||||||||||||||  ||||||||| ||||||||| |||||||| | | ||| |||||| |||||||     
T  11457839 tgatttggttccaatttatgagggatgcttttactataaatatagacattgtatcag-tgtaaaccttgagatagagggggctg-aaacaatggtttaga 11457742  T
Q  215 aagtcaactagaaaaaactagggtttgtatagagttt 251  Q
    ||| ||||   | ||||||||||||||||||||||||    
T  11457741 aagacaac--aacaaaactagggtttgtatagagttt 11457707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 216
Target Start/End: Complemental strand, 50079273 - 50079087
Alignment:
Q  29 tcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgta-ttttaagggtctgattttgttcc 127  Q
    ||||||||| ||||||| |||||||||| |||||||||||| ||||||| | || |||| |||||||||||||||| ||||| || |||||||| ||||     
T  50079273 tcattcgtagaaaatcggagcacgatctggcaaaatcggagcacgatttcgcgctgaagaataaaaataaaacgtatttttatggatctgatttggttca 50079174  T
Q  128 aatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||| |||| |||||||||||||||||||||||||  |||||| || ||||||||| |||||||| | | ||| ||||||||||||||||    
T  50079173 aatttatgagggatgcttttactataaatatagacattgtattag-tgtaaaccttgagatagagggggctg-aaacaagggtttagaa 50079087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 17318711 - 17318942
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacga-ttttgtgcagaagcataaaaataaaacgtattttaagggtc 115  Q
    |||||||| ||  |||||||||||||||| |||||||||| ||||||||||||| ||| ||||| |||||  ||||||||||||||||||||| | |  |    
T  17318711 aattgacagtttccattcgtaaaaaatcggagcacgatctggcaaaatcggagtgcgatttttgcgcagagtcataaaaataaaacgtattttta-gacc 17318809  T
Q  116 tgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag- 214  Q
    ||||||||||||||| |||| |||||  |||||||||||||||||   |||||||| | |||||||| |||||||| | | ||| ||||||||||||||     
T  17318810 tgattttgttccaatttatgagggatttttttactataaatataggttttgtatcata-gtaaaccttgagatagagggggctg-aaacaagggtttaga 17318907  T
Q  215 aagtcaactagaaaaaactagggtttgtatagagttt 251  Q
    ||| ||||   | ||||||||||||||| ||||||||    
T  17318908 aaggcaac--aacaaaactagggtttgtttagagttt 17318942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 60 - 251
Target Start/End: Complemental strand, 12302932 - 12302737
Alignment:
Q  60 aaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaa-gggtctgattttgttccaatctatgtgggatg-cttttactataaata 157  Q
    |||||||||| ||||||| ||||||||| |||||||||||| ||||||| | ||| ||||||| |||||||| |||| |||||  |||||||||||||||    
T  12302932 aaaatcggagcacgatttcgtgcagaagaataaaaataaaatgtatttttatgggcctgatttggttccaatttatgagggattacttttactataaata 12302833  T
Q  158 tagagcttgtatcagatgtaaacct----agagatagaagagactgaaaacaagggtttagaagt-caactagaaaaaactagggtttgtatagagttt 251  Q
    |||| ||||||||||||||||||||    ||||||||| | | ||| |||||||||||||||| | ||||   | ||||||||||||||||||||||||    
T  12302832 tagaccttgtatcagatgtaaaccttgagagagatagagggggctg-aaacaagggtttagaaatgcaac--aacaaaactagggtttgtatagagttt 12302737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 60 - 251
Target Start/End: Complemental strand, 50077093 - 50076904
Alignment:
Q  60 aaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaa-gggtctgattttgttccaatctatgtgggatgcttttactataaatat 158  Q
    |||||||||| ||||||||| ||||||| |||||||||||| ||||||| | ||| ||||||| |||||||| |||| ||||||||||||||||||||||    
T  50077093 aaaatcggagcacgattttgcgcagaagaataaaaataaaatgtatttttatgggcctgatttggttccaatttatgagggatgcttttactataaatat 50076994  T
Q  159 agagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttgtatagagttt 251  Q
    |||  ||||||||| ||||||||| |||||||||  | ||| |||||||| ||||| ||| ||||   | |||||||||||||||||| |||||    
T  50076993 agacattgtatcag-tgtaaaccttgagatagaaagggctg-aaacaaggatttagaaagacaac--aacaaaactagggtttgtataaagttt 50076904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 50307996 - 50307779
Alignment:
Q  29 tcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtctgattttgttcca 128  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||  || ||||||||||| | ||||  ||| ||||||||||| ||    
T  50307996 tcattcgtaaaaaatcgaagcacgatctggcaaaatcagagtacgattttgcgcagattcagaaaaataaaacttttttt--gggcctgattttgttaca 50307899  T
Q  129 atctatgtgggatgcttttactataaatatagagc-ttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactaga 226  Q
    || || | ||||| ||||||||||||||||| ||| |||||||| | |||||||| |||||| | | | ||||||| |||||||||| ||| ||| || |    
T  50307898 atttacgagggattcttttactataaatata-agctttgtatca-aagtaaaccttgagatatatggggctgaaaa-aagggtttagaaaggcaa-ta-a 50307804  T
Q  227 aaaaactagggtttgtatagagttt 251  Q
     ||||||||||||||||||||||||    
T  50307803 caaaactagggtttgtatagagttt 50307779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 40133756 - 40133909
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtct 116  Q
    ||||| |||||  |||| ||||||||||| |||||||||| |||||||| ||||||||||||| ||| || |||||||||||||| | ||||   || ||    
T  40133756 aattggcactttccattggtaaaaaatcggagcacgatctggcaaaatcagagtacgattttgcgcataatcataaaaataaaacatttttt---ggcct 40133852  T
Q  117 gattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcaga 173  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||   ||||||||||    
T  40133853 gattttgttccaatttatgagggattcttttactataaatataggctttgtatcaga 40133909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 248
Target Start/End: Complemental strand, 8347662 - 8347505
Alignment:
Q  88 cataaaaataaaacgtattttaa-gggtctgattttgttccaatct-atgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctaga 185  Q
    ||||||||||||||||||||| | ||||| ||||| |||||||| | ||| ||| | ||||||||||||| ||||| |||||||||||||||||||| ||    
T  8347662 cataaaaataaaacgtatttttatgggtcagattt-gttccaattttatgaggggtacttttactataaa-atagaccttgtatcagatgtaaaccttga 8347565  T
Q  186 gatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgtatagag 248  Q
    |||||| | |  || |||||||||||||||||||||| ||  |||||||||||||||||||||    
T  8347564 gatagagggggttg-aaacaagggtttagaagtcaacaag--aaaactagggtttgtatagag 8347505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 251
Target Start/End: Complemental strand, 8349442 - 8349281
Alignment:
Q  88 cataaaaataaaacgta-ttttaagggtctgattttgttccaatct-atgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctaga 185  Q
    ||||||||||||||||| ||||| ||||| ||||| |||||||| | ||| |||||  ||||| |||||||||||| ||||||| ||||| |||||| ||    
T  8349442 cataaaaataaaacgtaattttatgggtcagattt-gttccaattttatgagggataattttattataaatatagatcttgtattagatgcaaaccttga 8349344  T
Q  186 gatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgtatagagttt 251  Q
    ||||||   | ||| |||||||||||||||||||||| ||  |||| || ||||||||||||||||    
T  8349343 gatagagagggctg-aaacaagggtttagaagtcaacaag--aaaattaaggtttgtatagagttt 8349281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 18800911 - 18800802
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactaggg 237  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||| |||||| ||| | ||| |||||| ||||||||||||||| ||  ||||||| ||    
T  18800911 ggatacttttactataaatatagaccttgtatcaga-gtaaaccttgagatacaaggggctg-aaacaaaggtttagaagtcaacaag--aaaactacgg 18800816  T
Q  238 tttgtatagagttt 251  Q
    ||||||||||||||    
T  18800815 tttgtatagagttt 18800802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 251
Target Start/End: Original strand, 42922154 - 42922282
Alignment:
Q  120 tttgttccaa-tctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagt 218  Q
    |||||||||| | |||| ||||| |||||||||||||||||||  |||||||||| ||||||||  ||||||| | |  || ||| ||||||||||||||    
T  42922154 tttgttccaaatttatgagggatacttttactataaatatagattttgtatcaga-gtaaaccttaagatagagggggttg-aaataagggtttagaagt 42922251  T
Q  219 caactagaaaaaactagggtttgtatagagttt 251  Q
    |||| ||  ||||||||||||||||||||||||    
T  42922252 caacaag--aaaactagggtttgtatagagttt 42922282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 26613600 - 26613502
Alignment:
Q  120 tttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacct--agagatagaagagactgaaaacaagggtttagaag 217  Q
    ||||||||||| | || ||||| ||||| ||||||||||||| ||||||||||||| ||||||  ||||||||| | | |||||||||||||||||||||    
T  26613600 tttgttccaatttttgagggattcttttgctataaatatagaccttgtatcagatg-aaaccttgagagatagagggggctgaaaacaagggtttagaag 26613502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 26520449 - 26520349
Alignment:
Q  149 ctataaatatagagcttgtatcagatgtaaacctagagatagaagaga-ctgaaaacaagggtttagaagtcaactagaaaaaactagggtttgtataga 247  Q
    |||||||||||||  |||||||||| |||||||| |||||||| | |  |||||||||| ||||||||||||||| ||  ||||||||||||| ||||||    
T  26520449 ctataaatatagactttgtatcaga-gtaaaccttgagatagaggggggctgaaaacaacggtttagaagtcaacaag--aaaactagggtttctataga 26520353  T
Q  248 gttt 251  Q
    ||||    
T  26520352 gttt 26520349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 30738963 - 30738891
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||||||| ||||  ||||||||||||| |||||| |||||| | | ||||||||||||||||||||||    
T  30738963 cttttactataaacatagtccttgtatcagatg-aaaccttgagatacaggtgactgaaaacaagggtttagaa 30738891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 49958965 - 49959020
Alignment:
Q  120 tttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatg 175  Q
    ||||||||||  | |||||||||||||| ||||||||||||| |||||||||||||    
T  49958965 tttgttccaaattttgtgggatgcttttgctataaatatagaccttgtatcagatg 49959020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 2617460 - 2617565
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    |||| |||||||||||||| ||||||||||| | |||| | |||||||| ||| ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  2617460 ctttcactataaatatagaccttgtatcaga-gcaaactttgagatagaggaggctg-aaacaagggtttagaaagacaac--aacaaaactagggtttg 2617555  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  2617556 tatagagttt 2617565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 13215025 - 13215130
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| |||||  | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  13215025 cttttactataaatatagaccttgtatcaga-gtaaattttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 13215120  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  13215121 tatagagttt 13215130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 15823490 - 15823595
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||| | |||||| |||||||| | | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  15823490 cttttactataaatatagaccttgtatca-aagtaaacttagagataaagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 15823585  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  15823586 tatagagttt 15823595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 28998590 - 28998485
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttg 241  Q
    |||||||||||||||||||  ||| |||||| |||||| | |||||||| ||| ||| |||||||||||||||| | ||||   | ||||||||||||||    
T  28998590 cttttactataaatatagactttgaatcaga-gtaaactttgagatagaggaggctg-aaacaagggtttagaatgacaac--aacaaaactagggtttg 28998495  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  28998494 tatagagttt 28998485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 29004306 - 29004201
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttg 241  Q
    |||||||||||||||||||  ||| |||||| |||||| | |||||||| ||| ||| |||||||||||||||| | ||||   | ||||||||||||||    
T  29004306 cttttactataaatatagactttgaatcaga-gtaaactttgagatagaggaggctg-aaacaagggtttagaatgacaac--aacaaaactagggtttg 29004211  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  29004210 tatagagttt 29004201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 41646864 - 41646969
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||||||| | | ||| ||| |||||||||| ||| ||||   | ||||||||||||||    
T  41646864 cttttactataaatatagaccttgtatcaga-gtaaactttgagatagagggggctg-aaataagggtttagaaaggcaac--aacaaaactagggtttg 41646959  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  41646960 tatagagttt 41646969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 51749983 - 51750088
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  51749983 cttttactataaatatagaccttgtatcaga-gcaaacttggagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 51750078  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  51750079 tatagagttt 51750088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 248
Target Start/End: Complemental strand, 14183928 - 14183824
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactaggg 237  Q
    |||| ||||||||||||||||||| | ||||||||| |||||||| ||||||||   | ||| ||||||||||||||||  ||||    | |||||||||    
T  14183928 ggattcttttactataaatatagaccatgtatcaga-gtaaaccttgagatagagagggctg-aaacaagggtttagaatgcaac----acaaactaggg 14183835  T
Q  238 tttgtatagag 248  Q
    |||||||||||    
T  14183834 tttgtatagag 14183824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 243
Target Start/End: Original strand, 27916418 - 27916540
Alignment:
Q  120 tttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagataga-agagactgaaaacaagggtttagaagt 218  Q
    ||||||||||| |  | ||||| |||||||||||||||||||  |||||||| ||||||||   |||| | | |||| | |||||||||||||||||||     
T  27916418 tttgttccaattttggagggatacttttactataaatatagacattgtatcaaatgtaaactgtgagaaacagagagccagaaaacaagggtttagaagc 27916517  T
Q  219 caactagaaaaaactagggtttgta 243  Q
    || | ||  ||||||||||||||||    
T  27916518 cagcaag--aaaactagggtttgta 27916540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 30790731 - 30790659
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    |||||||||||||||||||  |||||||||| |||||||| |||||||| |   ||||||||||| ||||||||    
T  30790731 cttttactataaatatagacattgtatcaga-gtaaaccttgagatagagggagctgaaaacaagagtttagaa 30790659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 49495547 - 49495468
Alignment:
Q  132 tatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggttta 213  Q
    |||| ||||| |||||||||||||||||||  |||||||||| |||||||| |||||||| | | ||| |||||||||||||    
T  49495547 tatgagggatacttttactataaatatagactttgtatcaga-gtaaaccttgagatagagggggctg-aaacaagggttta 49495468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 15669734 - 15669659
Alignment:
Q  137 gggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggttt 212  Q
    ||||| ||||||||||||||| ||| |||||| ||||||||||| | | |||||| | | |||||||| |||||||    
T  15669734 gggatacttttactataaatacagaccttgtagcagatgtaaacattgggatagagggggctgaaaactagggttt 15669659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 26332885 - 26332815
Alignment:
Q  149 ctataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaac 222  Q
    ||||||||| ||| |||||||||||||||||||| |||| ||| ||   | |||||||||||||||||| ||||    
T  26332885 ctataaatacagaccttgtatcagatgtaaaccttgagagagagga---taaaaacaagggtttagaagccaac 26332815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 26979889 - 26979830
Alignment:
Q  116 tgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatg 175  Q
    ||||||||||||||| | |  |||||||||||| |||||||| ||| |||||||||||||    
T  26979889 tgattttgttccaattttttagggatgcttttattataaataaagaccttgtatcagatg 26979830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 155621 - 155683
Alignment:
Q  120 tttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacct 182  Q
    |||||| |||| | || ||||| |||||||||||||| || | ||||||||||||||||||||    
T  155621 tttgtttcaatttttgagggatccttttactataaatgtaaatcttgtatcagatgtaaacct 155683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 20302403 - 20302508
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    |||||| |||||||||||| ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  20302403 cttttattataaatatagaccttgtatcaga-gcaaactttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 20302498  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  20302499 tatagagttt 20302508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 38925815 - 38925710
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||||||| | | ||| ||||||| ||| || ||| ||||   | ||||||||||||||    
T  38925815 cttttactataaatatagaccttgtatcaga-gtaaactttgagatagagggggctg-aaacaagagttcagaaaggcaac--aacaaaactagggtttg 38925720  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  38925719 tatagagttt 38925710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 43104097 - 43104176
Alignment:
Q  137 gggatgcttttactataaatatagagcttgtatcagatgtaaacct--agagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||||||   ||| ||| |||| |||||||||| |||||||||    
T  43104097 gggatacttttactataaatatagaccttgtatcaga-gtaaaccttgtgaggtag-agagtctgaaaacaatggtttagaa 43104176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 47451592 - 47451697
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||||||| | | ||  |||||||||||| ||| | ||||   | ||||||||||||||    
T  47451592 cttttactataaatatagaccttgtatcaga-gtaaactttgagatagagggggct-taaacaagggtttggaatggcaac--aacaaaactagggtttg 47451687  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  47451688 tatagagttt 47451697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 251
Target Start/End: Original strand, 18307054 - 18307158
Alignment:
Q  144 ttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttgt 242  Q
    |||| |||||||||||||  ||||||||| ||||||||| |||||||| | | ||| |||||||||||||| ||| ||||   | |||||||||||||||    
T  18307054 ttttgctataaatatagacattgtatcag-tgtaaaccttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttgt 18307149  T
Q  243 atagagttt 251  Q
    ||| |||||    
T  18307150 ataaagttt 18307158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 28207403 - 28207332
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||||||||||||| |||||||||||  ||||| | |||||||| | | ||| ||||||||||||||||    
T  28207403 cttttactataaatatagaccttgtatcaga-ctaaactttgagatagagggggctg-aaacaagggtttagaa 28207332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 50248914 - 50248862
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagataga 191  Q
    |||| |||||||||||||||||||  ||||||||| ||||||||| ||||||||    
T  50248914 ggattcttttactataaatatagacattgtatcag-tgtaaaccttgagataga 50248862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 25251611 - 25251541
Alignment:
Q  144 ttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||||||||||||  |||||||||| |||||||| |||||||| | | ||| |||||| |||||||||    
T  25251611 ttttactataaatatagactttgtatcaga-gtaaaccttgagatagagggggctg-aaacaaaggtttagaa 25251541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 20137569 - 20137339
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtct 116  Q
    ||||| |||||  ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| || |||||||||||||||||||||  ||| ||    
T  20137569 aattggcactttccattcgtaaaaaatcgaagcacgatctggcaaaatcggagtacgattttgcgcaaaatcataaaaataaaacgtatttt-tgggcct 20137471  T
Q  117 gattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-a 215  Q
    |||||||||||||| |||| ||||| |||||||||||||||| |   |||||||||| |||||||| |||||||| | | ||| |||||||||||||| |    
T  20137470 gattttgttccaatttatgagggattcttttactataaatattggctttgtatcaga-gtaaaccttgagatagagggggctg-aaacaagggtttagaa 20137373  T
Q  216 agtcaactagaaaaaactagggtttgtatagagttt 251  Q
    || ||||   | |||||||| |||||||||||||||    
T  20137372 aggcaac--aacaaaactagagtttgtatagagttt 20137339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 29 - 187
Target Start/End: Original strand, 9680653 - 9680812
Alignment:
Q  29 tcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaa-gggtctgattttgttcc 127  Q
    ||||||| ||||||| | ||||||||||  ||||||||||||||||||||| |||||  || |||||||||| ||||||| | ||| ||||||| |||||    
T  9680653 tcattcgaaaaaaattggagcacgatctgacaaaatcggagtacgattttgcgcagattcagaaaaataaaatgtatttttatgggcctgatttggttcc 9680752  T
Q  128 aatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagaga 187  Q
    ||| |||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  9680753 aatttatgagggatgcttttactataaatatagaccttgtatcagatgtaaaccttgaga 9680812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 60 - 251
Target Start/End: Complemental strand, 4296355 - 4296165
Alignment:
Q  60 aaaatcggagtacgattttgtgcagaagcataaaaataaaacgta-ttttaagggtctgattttgttccaatctatgtgggatgcttttactataaatat 158  Q
    |||||||||| ||||||||| ||||||| |||||||||||||||| ||||| ||| ||||||| | |||||| |||| ||||||||||||||||||||||    
T  4296355 aaaatcggagcacgattttgcgcagaagaataaaaataaaacgtatttttatgggcctgatttggatccaatttatgagggatgcttttactataaatat 4296256  T
Q  159 aga-gcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttgtatagagttt 251  Q
    |||   ||||||||| ||||||||| |||||||| | | ||| |||||||||||||||| | ||||   | ||||||||||||||||||||||||    
T  4296255 agacatttgtatcag-tgtaaaccttgagatagagggggctg-aaacaagggtttagaatgacaac--aacaaaactagggtttgtatagagttt 4296165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 251
Target Start/End: Original strand, 11355130 - 11355317
Alignment:
Q  60 aaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtctgattttgttccaatctatgtgggatgcttttactataaatata 159  Q
    |||||||||| ||||||||| |||||  || ||||||||||||||||||  ||| |||||||||||||||| |||| ||||| |||||||||||||||||    
T  11355130 aaaatcggagcacgattttgcgcagagtcagaaaaataaaacgtattttt-gggcctgattttgttccaatttatgagggattcttttactataaatata 11355228  T
Q  160 gagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttgtatagagttt 251  Q
    |   ||||||||| ||||||||| |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||||||||||||    
T  11355229 ggctttgtatcag-tgtaaaccttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttgtatagagttt 11355317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 251
Target Start/End: Original strand, 42223007 - 42223216
Alignment:
Q  39 aaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtctgattttgttccaatctatgtgg 138  Q
    ||||||| || ||||| | |||||||||||||||||||||| | |||  || ||||||||||||||||||  ||| |||||||||||||||| |||| ||    
T  42223007 aaaatcggagtacgatatggcaaaatcggagtacgattttgcgtagattcagaaaaataaaacgtatttt-tgggcctgattttgttccaatttatgagg 42223105  T
Q  139 gatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactaggg 237  Q
    | | ||||||||||||||||||   |||||||||| |||||||| |||||||| | |     |||||||||||||||| | ||||   | ||||||||||    
T  42223106 gtttcttttactataaatataggctttgtatcaga-gtaaaccttgagatagatgtgggatgaaacaagggtttagaatggcaac--aacaaaactaggg 42223202  T
Q  238 tttgtatagagttt 251  Q
    ||||||||||||||    
T  42223203 tttgtatagagttt 42223216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 24817682 - 24817580
Alignment:
Q  145 tttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgtat 244  Q
    |||| |||||||||||| |||||||||||||||||||| ||||||| || | ||| |||||||||||||||||||||| ||  | |||||||||||||||    
T  24817682 tttaatataaatatagaccttgtatcagatgtaaaccttgagatag-aggggctg-aaacaagggtttagaagtcaacaag--agaactagggtttgtat 24817587  T
Q  245 agagttt 251  Q
    |||||||    
T  24817586 agagttt 24817580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 251
Target Start/End: Original strand, 7188473 - 7188601
Alignment:
Q  120 tttgttccaatct-atgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagt 218  Q
    ||||||||||| | ||| ||||| |||||||||||||||||||  |||||||||| |||||||| |||||||| | | ||| ||||||||||||||||||    
T  7188473 tttgttccaattttatgagggatacttttactataaatatagactttgtatcaga-gtaaaccttgagatagagggggctg-aaacaagggtttagaagt 7188570  T
Q  219 caactagaaaaaactagggtttgtatagagttt 251  Q
    |||| | |||||  |||||||||||||| ||||    
T  7188571 caacaataaaaa--tagggtttgtatagggttt 7188601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 6348778 - 6348878
Alignment:
Q  149 ctataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgtatagag 248  Q
    ||||||||||| | |||||||||||||||||| | ||||||||   |||||||||||||||||||||||| ||  | | ||||||||||||||||| |||    
T  6348778 ctataaatataaaccttgtatcagatgtaaacattgagatagagaggactgaaaacaagggtttagaagtaaa--aaagaaaactagggtttgtatcgag 6348875  T
Q  249 ttt 251  Q
    |||    
T  6348876 ttt 6348878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 251
Target Start/End: Complemental strand, 20091900 - 20091772
Alignment:
Q  120 tttgttccaatct-atgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagt 218  Q
    ||||||||||| | ||| ||||| |||||||||||||||||||  || ||||||| |||||||| |||||||| | | |||||||||||||||| | ||     
T  20091900 tttgttccaattttatgagggatacttttactataaatatagactttttatcaga-gtaaaccttgagatagagggggctgaaaacaagggtttcggagg 20091802  T
Q  219 caactagaaaaaactagggtttgtatagagttt 251  Q
    ||||   | ||||||||||||||||||||||||    
T  20091801 caac---acaaaactagggtttgtatagagttt 20091772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 9678960 - 9679045
Alignment:
Q  96 taaaacgtattttaa-gggtctgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaac 180  Q
    ||||||||||||| | |||| |||||| ||| |||| |||| |||||| |||||||||||||||||| ||||||||||||||||||    
T  9678960 taaaacgtatttttatgggtttgatttggtttcaatttatgagggatgtttttactataaatatagatcttgtatcagatgtaaac 9679045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 18567567 - 18567672
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||||||||| | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  18567567 cttttactataaatatagatcttgtatcaga-gtaaactttgagatagaaggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 18567662  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  18567663 tatagagttt 18567672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 31435382 - 31435277
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||||||||| | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  31435382 cttttactataaatatagatcttgtatcaga-gtaaactttgagatagaaggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 31435287  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  31435286 tatagagttt 31435277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 6048620 - 6048670
Alignment:
Q  137 gggatgcttttactataaatatagagcttgtatcagatgtaaacctagaga 187  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||| ||||    
T  6048620 gggatgcttttactataaatatagaccttgtattagatgtaaaccttgaga 6048670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 42222965 - 42223022
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgat 75  Q
    ||||||||||| ||||||||||||||||  |||||||||| ||||||||||||||||||    
T  42222965 aattgacactt-tcattcgtaaaaaatcagagcacgatctggcaaaatcggagtacgat 42223022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 24465503 - 24465579
Alignment:
Q  144 ttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaa 221  Q
    |||||||||| |||||||  ||||||||||||||||||| |||||||| | | ||| |||||||||||||||| ||||    
T  24465503 ttttactatagatatagactttgtatcagatgtaaaccttgagatagagggggctg-aaacaagggtttagaaatcaa 24465579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 21678015 - 21678125
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagg 236  Q
    |||| |||||||||||||||||||  |||||||| |||||||||| |||||||| | | ||| |||||||||||||| ||| ||||     |||||||||    
T  21678015 ggattcttttactataaatatagatattgtatca-atgtaaaccttgagatagagggggctg-aaacaagggtttagaaaggcaac--atcaaaactagg 21678110  T
Q  237 gtttgtatagagttt 251  Q
    |||||||||||||||    
T  21678111 gtttgtatagagttt 21678125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 21679976 - 21680086
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagg 236  Q
    |||| |||||||||||||||||||  |||||| || ||||||||| |||||||| | | ||| |||||||||||||| ||| ||||   | |||||||||    
T  21679976 ggattcttttactataaatatagacattgtattag-tgtaaaccttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagg 21680071  T
Q  237 gtttgtatagagttt 251  Q
    |||||||||||||||    
T  21680072 gtttgtatagagttt 21680086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 44724528 - 44724638
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagg 236  Q
    |||| |||||||||||||||||||  ||||||||| ||||||||| |||||| | | | ||| |||||||||||||| ||| ||||   | |||||||||    
T  44724528 ggattcttttactataaatatagacattgtatcag-tgtaaacctggagatatagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagg 44724623  T
Q  237 gtttgtatagagttt 251  Q
    |||||||||||||||    
T  44724624 gtttgtatagagttt 44724638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 26210494 - 26210544
Alignment:
Q  137 gggatgcttttactataaatatagagcttgtatcagatgtaaacctagaga 187  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||| ||||    
T  26210494 gggatgcttttagtataaatatagaacttgtatcaaatgtaaaccttgaga 26210544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 31156246 - 31156141
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||||||||||||| | | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  31156246 cttttactataaatatagagcttgtatca-aggcaaactttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 31156151  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  31156150 tatagagttt 31156141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 27306564 - 27306493
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||||||| | | ||| ||||||||||||||||    
T  27306564 cttttactataaatatagaccttgtatcaga-gtaaactttgagatagagggggctg-aaacaagggtttagaa 27306493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 37412462 - 37412358
Alignment:
Q  144 ttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttgt 242  Q
    |||||||||||||||||| |||| |||||| |||||||| |||||| | | | ||| |||||||||||||||| | ||||   | |||||||||||||||    
T  37412462 ttttactataaatatagaccttgaatcaga-gtaaacctggagatatagggggctg-aaacaagggtttagaatggcaac--aacaaaactagggtttgt 37412367  T
Q  243 atagagttt 251  Q
    |||||||||    
T  37412366 atagagttt 37412358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 39146327 - 39146217
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttaga-agtcaactagaaaaaactagg 236  Q
    |||| |||||||||||||||||||   |||||||| ||||||||| ||||| || | | ||| ||||||||||||||| || ||||   | |||||||||    
T  39146327 ggattcttttactataaatatagacactgtatcag-tgtaaaccttgagatggagggggctg-aaacaagggtttagatagacaac--aacaaaactagg 39146232  T
Q  237 gtttgtatagagttt 251  Q
    |||||||||||||||    
T  39146231 gtttgtatagagttt 39146217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 44518 - 44623
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  44518 cttttactataaatatagaccttgtatcaga-gcaaactttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 44613  T
Q  242 tatagagttt 251  Q
    | ||||||||    
T  44614 tgtagagttt 44623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 1049630 - 1049525
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||| ||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  1049630 cttttactataaatatagaccttgtattaga-gcaaactttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 1049535  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  1049534 tatagagttt 1049525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 13099811 - 13099706
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| |||| |||| | |||||||| |||||||| | |  || |||||||||||||||| | ||||   | ||||||||||||||    
T  13099811 cttttactataaatatagaccttgaatca-aagtaaaccttgagatagagggggttg-aaacaagggtttagaatggcaac--aacaaaactagggtttg 13099716  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  13099715 tatagagttt 13099706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 22392427 - 22392495
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggttta 213  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||||||| | | ||| |||||||||||||    
T  22392427 cttttactataaatatagaccttgtatcaga-gtaaactttgagatagagggggctg-aaacaagggttta 22392495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 6067550 - 6067490
Alignment:
Q  120 tttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaac 180  Q
    ||||||||||| | |  ||||||||||||||||||||||| | | ||||||||||| ||||    
T  6067550 tttgttccaattttttagggatgcttttactataaatataaatcctgtatcagatgaaaac 6067490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 21990106 - 21990175
Alignment:
Q  144 ttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    |||||||||||||||||| |||| |||||| |||||||| ||||||| || | ||| ||||||||||||||||    
T  21990106 ttttactataaatatagaccttgaatcaga-gtaaacctggagatag-aggggctg-aaacaagggtttagaa 21990175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 36208394 - 36208596
Alignment:
Q  14 caaaattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgta-ttttaagg 112  Q
    ||||||||||||||  |||||||||||||||  |||||||||| |||||||||||| | ||||| | ||| ||| ||||||||||||| || ||||| ||    
T  36208394 caaaattgacactttccattcgtaaaaaatcagagcacgatctggcaaaatcggagcatgatttcgcgcaaaagaataaaaataaaacatatttttatgg 36208493  T
Q  113 gtctgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggttt 212  Q
    | |||||||||||||||| |  | ||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| | | ||||||||||||||||    
T  36208494 gcctgattttgttccaatttgcgagggatgcttttactataaatatagaccttgtatcaga-gtaaaccttgagatagagggggctgaaaacaagggttt 36208592  T
Q  213 agaa 216  Q
    ||||    
T  36208593 agaa 36208596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 25903921 - 25904152
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgta-ttttaagggtc 115  Q
    ||||||||||| | |||| |||||||||| |||||||||| |||||||||||| ||||||| | ||||||| |||||||||||||||| ||||| ||| |    
T  25903921 aattgacactttt-attcataaaaaatcggagcacgatctggcaaaatcggagcacgatttcgcgcagaagaataaaaataaaacgtatttttatgggcc 25904019  T
Q  116 tgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag- 214  Q
    | |||| ||| |||| ||||  ||||||||||||||||||||||||  ||||||||| ||||||||| |||||||| | | ||| ||||||||||||||     
T  25904020 taatttggtttcaatttatgaaggatgcttttactataaatatagacattgtatcag-tgtaaaccttgagatagagggggctg-aaacaagggtttaga 25904117  T
Q  215 aagtcaactagaaaaaactagggtttgtatagagttt 251  Q
    ||| ||||   | |||||||||| |||||||||||||    
T  25904118 aagacaac--aacaaaactagggattgtatagagttt 25904152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 16092654 - 16092502
Alignment:
Q  29 tcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgta-ttttaagggtctgattttgttcc 127  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||| | |||||  ||||||||||||||||| ||||| ||| ||||||| |||||    
T  16092654 tcattcgtaaaaaatcggagcacgatctggcaaaatcggagtacgatttggcgcagagtcataaaaataaaacgtagttttatgggcctgatttggttcc 16092555  T
Q  128 aatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaac 180  Q
    ||| |||| |||||   ||||||| |||||||||  |||||||||||||||||    
T  16092554 aatttatgagggattgctttactagaaatatagactttgtatcagatgtaaac 16092502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 31473061 - 31472843
Alignment:
Q  29 tcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgta-ttttaagggtctgattttgttcc 127  Q
    |||||| |||||||||| |||||||||| ||||| |||||| ||||||| | ||||||| |||||||||||  ||| ||||| ||| ||||||| |||||    
T  31473061 tcattcttaaaaaatcggagcacgatctggcaaagtcggagcacgatttcgcgcagaagaataaaaataaa--gtatttttatgggcctgatttggttcc 31472964  T
Q  128 aatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactaga 226  Q
    ||| |||| |||||||||||||||||||||| ||  |||||| || ||||||||| |||||||| | | || ||||||||||||||| ||| ||||   |    
T  31472963 aatttatgagggatgcttttactataaatatggacattgtattag-tgtaaaccttgagatagagggggct-aaaacaagggtttagaaaggcaac--aa 31472868  T
Q  227 aaaaactagggtttgtatagagttt 251  Q
     ||||||||||||||||||||||||    
T  31472867 caaaactagggtttgtatagagttt 31472843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 187
Target Start/End: Complemental strand, 1190034 - 1189905
Alignment:
Q  60 aaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaa-gggtctgattttgttccaatctatgtgggat-gcttttactataaata 157  Q
    |||||||||| ||||||||| ||||||| |||||||||||||||||||| | ||| ||||||| |||||||| |||| ||||| ||||||||||||||||    
T  1190034 aaaatcggagcacgattttgggcagaagaataaaaataaaacgtatttttatgggcctgatttggttccaatttatgagggattgcttttactataaata 1189935  T
Q  158 tagagcttgtatcagatgtaaacctagaga 187  Q
    |||| |||||||||||||||||||| ||||    
T  1189934 tagaccttgtatcagatgtaaaccttgaga 1189905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 250
Target Start/End: Original strand, 9020082 - 9020270
Alignment:
Q  60 aaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaa-gggtctgattttgttccaatctatgtgggatgcttttactataaatat 158  Q
    |||||||||||||||||||| ||||||  ||||||||||||| |||||| | |||||||||||||||||||| |||| | |||| ||||||||||||||     
T  9020082 aaaatcggagtacgattttgcgcagaacaataaaaataaaacatatttttatgggtctgattttgttccaatttatgagagatgtttttactataaatac 9020181  T
Q  159 agagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgtatagagtt 250  Q
    | | |||||||||||||||||||| | | |||| |   |||||||||||||||| | || ||||   | |||| ||||||||||||||||||    
T  9020182 ataccttgtatcagatgtaaaccttgtgctagagggagctgaaaacaagggtttgggaggcaac---acaaaagtagggtttgtatagagtt 9020270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 29748231 - 29748322
Alignment:
Q  89 ataaaaataaaacgtattttaagggtctgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaac 180  Q
    |||||||||||||||||||| | ||| ||  ||||||||||  | || ||||||||||||||||||||||||| ||||||||||||||||||    
T  29748231 ataaaaataaaacgtatttttatggtttggatttgttccaaattttgagggatgcttttactataaatatagaccttgtatcagatgtaaac 29748322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 6661512 - 6661413
Alignment:
Q  148 actataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgtataga 247  Q
    |||||||||||||| ||||||||||| |||||||| |||||||| |||  |  |||||||||||||||||||||| ||  |||| |||||| ||||||||    
T  6661512 actataaatatagaccttgtatcaga-gtaaaccttgagataga-gagggttgaaacaagggtttagaagtcaacaag--aaaattagggtatgtataga 6661417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 17072822 - 17072932
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagg 236  Q
    |||| |||||||||||||||||||  ||||||||| ||||||||| |||||||| | | ||| |||||||||||||| ||| ||||   | |||||||||    
T  17072822 ggattcttttactataaatatagacattgtatcag-tgtaaaccttgagatagagggggctg-aaacaagggtttagaaagacaac--aacaaaactagg 17072917  T
Q  237 gtttgtatagagttt 251  Q
    |||||||||||||||    
T  17072918 gtttgtatagagttt 17072932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 2144933 - 2144883
Alignment:
Q  137 gggatgcttttactataaatatagagcttgtatcagatgtaaacctagaga 187  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||| ||||    
T  2144933 gggatacttttactataaatatagaccttgtatcagatgtaaaccttgaga 2144883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 42770694 - 42770795
Alignment:
Q  120 tttgttccaatct-atgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagt 218  Q
    ||||||||||| | ||| ||||| ||||||||||||||||| |  ||||||| || |||||||| |||||||| | |||||||||||||||||| ||||     
T  42770694 tttgttccaattttatgagggatacttttactataaatataaactttgtatc-ga-gtaaaccttgagatagaggggactgaaaacaagggtttggaagg 42770791  T
Q  219 caac 222  Q
    ||||    
T  42770792 caac 42770795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 20507797 - 20507692
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||||||| | | |||||| ||||||||||||| | |||| |  ||||| || ||||||    
T  20507797 cttttactataaatatagatcttgtatcaga-gtaaactttgagatagagggggctgaaa-caagggtttagaaaggcaacaa--aaaaattaaggtttg 20507702  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  20507701 tatagagttt 20507692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 25921808 - 25921703
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  25921808 cttttactataaatatagaccttgtatcaga-gcaaactttgagatagagggggctg-aaacaagggtttagaaagacaac--aacaaaactagggtttg 25921713  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  25921712 tatagagttt 25921703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 26098586 - 26098481
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| |||| |||||| |||||||| |||||||| | | ||| ||| |||||||||||| | |||| ||  || |||||||||||    
T  26098586 cttttactataaatatagaccttgaatcaga-gtaaacctggagatagagggggctg-aaataagggtttagaatggcaacaag--aagactagggtttg 26098491  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  26098490 tatagagttt 26098481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 2818671 - 2818600
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||||||| | | ||| ||||||||||||||||    
T  2818671 cttttactataaatatagaccttgtatcaga-gtaaactttgagatagagggggctg-aaacaagggtttagaa 2818600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 15143437 - 15143500
Alignment:
Q  149 ctataaatatagagcttgtatcagatgtaaacct--agagatagaagagactgaaaacaagggt 210  Q
    ||||||||||||| ||||||||||||||||||||  ||||| | | ||| ||||||||||||||    
T  15143437 ctataaatatagaccttgtatcagatgtaaaccttgagagagataggaggctgaaaacaagggt 15143500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 24126795 - 24126905
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagg 236  Q
    |||| |||||||||||||||||||  || |||||| ||||||||| |||||||| | | ||| ||||||| |||||| ||| ||||   | |||||||||    
T  24126795 ggattcttttactataaatatagacattatatcag-tgtaaaccttgagatagatggggctg-aaacaagagtttagaaagacaac--aacaaaactagg 24126890  T
Q  237 gtttgtatagagttt 251  Q
    |||||||||||||||    
T  24126891 gtttgtatagagttt 24126905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 2174859 - 2174968
Alignment:
Q  139 gatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactaggg 237  Q
    ||||||||||||||||||| ||  ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||    
T  2174859 gatgcttttactataaatacaggccttgtatcaga-gcaaacttggagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactaggg 2174954  T
Q  238 tttgtatagagttt 251  Q
    ||||||||||||||    
T  2174955 tttgtatagagttt 2174968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 4754089 - 4754146
Alignment:
Q  137 gggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagag 195  Q
    |||||||| ||||||||| |||||| ||||||||||||| |||||| |||| |||||||    
T  4754089 gggatgctcttactataagtatagatcttgtatcagatg-aaaccttgagagagaagag 4754146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 11962886 - 11962824
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttg 79  Q
    ||||||||||| ||  ||||||||||||| ||| |||||| | |||||||||| |||||||||    
T  11962886 aattgacacttttctctcgtaaaaaatcggagcccgatctggaaaaatcggagcacgattttg 11962824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 12556258 - 12556153
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||||||| | | ||| ||| |||||||||||| | ||||   | |||||||| |||||    
T  12556258 cttttactataaatatagaccttgtatcaga-gtaaactttgagatagagggggctg-aaataagggtttagaatgacaac--aacaaaactagagtttg 12556163  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  12556162 tatagagttt 12556153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 20053793 - 20053839
Alignment:
Q  116 tgattttgttccaatctatgtgggatgcttttactataaatatagag 162  Q
    |||||||||||||||||||| || ||||||||| | |||||||||||    
T  20053793 tgattttgttccaatctatgaggcatgcttttattgtaaatatagag 20053839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 31542679 - 31542784
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||| | | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  31542679 cttttactataaatatagaccttgtatca-aagcaaactttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 31542774  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  31542775 tatagagttt 31542784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 40221466 - 40221571
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttg 241  Q
    |||||||||||||||||||  |||  ||||| |||||||| |||||||| | | ||| |||||||||||||||| | ||||   | ||||||||||||||    
T  40221466 cttttactataaatatagacattgactcaga-gtaaaccttgagatagagggggctg-aaacaagggtttagaatggcaac--aacaaaactagggtttg 40221561  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  40221562 tatagagttt 40221571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 2723906 - 2723958
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagataga 191  Q
    |||| |||||||||||||||||||  ||||||||| ||||||||| ||||||||    
T  2723906 ggattcttttactataaatatagacattgtatcag-tgtaaaccttgagataga 2723958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 18596591 - 18596694
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgt 242  Q
    ||||||||||||||||||| |||| |||||| |||||||| | |||||| | | ||| |||||||||| || ||| ||||   | |||||||||||||||    
T  18596591 cttttactataaatatagaccttgaatcaga-gtaaaccttgggatagagggggctg-aaacaagggtata-aagacaac--aacaaaactagggtttgt 18596685  T
Q  243 atagagttt 251  Q
    |||||||||    
T  18596686 atagagttt 18596694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 36402663 - 36402592
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||||||||||||| ||| ||||||| |||||| | |||||||| | | ||| ||||||||||||||||    
T  36402663 cttttactataaatatagaccttatatcaga-gtaaacgttgagatagagggggctg-aaacaagggtttagaa 36402592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 17848911 - 17849108
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattt-taagggtc 115  Q
    ||||||||||| ||||||||||||||||  |||||| ||| | |||||||||| ||||||| | ||||||| ||||||||||||||||||| || ||| |    
T  17848911 aattgacactt-tcattcgtaaaaaatctgagcacggtctggaaaaatcggagcacgatttcgcgcagaagaataaaaataaaacgtatttatatgggcc 17849009  T
Q  116 tgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttaga 215  Q
    |||||| |||||||| |||| ||||||||||||||||||||||| |  ||||||||| ||||||||| |||||||| | | ||| |||||||||||||||    
T  17849010 tgatttggttccaatttatgagggatgcttttactataaatataaacattgtatcag-tgtaaaccttgagatagagggggctg-aaacaagggtttaga 17849107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 28196433 - 28196662
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtct 116  Q
    ||||||||||| ||||| ||||||||||| |||| ||||| |||||||||||||||||||||| |||||  |||||||||||||||||||||  ||| ||    
T  28196433 aattgacactt-tcattagtaaaaaatcggagcatgatctggcaaaatcggagtacgattttgcgcagagtcataaaaataaaacgtatttt-tgggcct 28196530  T
Q  117 gattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-a 215  Q
    |||||||||||||| |||| ||||| |||||||||||||||||    |||||||||| |||||| | |||||||| | | ||| |||||| ||||||| |    
T  28196531 gattttgttccaatttatgagggattcttttactataaatatatgctttgtatcaga-gtaaacattgagatagagggggctg-aaacaaaggtttagaa 28196628  T
Q  216 agtcaactagaaaaaactagggtttgtatagagttt 251  Q
    || ||||   | ||||||||||||||||||||||||    
T  28196629 aggcaac--aacaaaactagggtttgtatagagttt 28196662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 60 - 251
Target Start/End: Complemental strand, 31733184 - 31732995
Alignment:
Q  60 aaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaa-gggtctgattttgttccaatctatgtgggatgcttttactataaatat 158  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||||| | ||| ||||||| |||||||| |||| ||||||||||||||||||||||    
T  31733184 aaaatcggagcacgattttgtgcagaagagtaaaaataaaacgtatttttatgggcctgatttggttccaatttatgagggatgcttttactataaatat 31733085  T
Q  159 agagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttgtatagagttt 251  Q
    |||  ||||| |||| |||||| | |||||||| | | ||| |||||||||||||| ||| ||||   | |||||||| |||||||||||||||    
T  31733084 agactttgtaacaga-gtaaacattgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagagtttgtatagagttt 31732995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 187
Target Start/End: Complemental strand, 45239400 - 45239272
Alignment:
Q  60 aaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaa-gggtctgattttgttccaatctatgtgggatgcttttactataaatat 158  Q
    |||||||||| |||||||   ||||||| |||||||||||||||||||| | ||| ||||||| |||||||| |||| ||||||||||||||||||||||    
T  45239400 aaaatcggagcacgatttcacgcagaagaataaaaataaaacgtatttttatgggcctgatttagttccaatttatgagggatgcttttactataaatat 45239301  T
Q  159 agagcttgtatcagatgtaaacctagaga 187  Q
    ||| | |  ||||||||||||||| ||||    
T  45239300 agaccattcatcagatgtaaaccttgaga 45239272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 251
Target Start/End: Complemental strand, 17897583 - 17897472
Alignment:
Q  137 gggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagg 236  Q
    ||||| ||||||||||||||||||| ||||||||||||||||| || ||| ||| |||| |||| |||||||||||||||||||||   | |||||||||    
T  17897583 gggatacttttactataaatatagaccttgtatcagatgtaaaacttgaggtag-agagtctgagaacaagggtttagaagtcaac--aataaaactagg 17897487  T
Q  237 gtttgtatagagttt 251  Q
    |||||||||||||||    
T  17897486 gtttgtatagagttt 17897472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 38414489 - 38414348
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtct 116  Q
    ||||| |||||  |||||||||||||||| |||| ||||| ||||||||||||||||| |||| |||||| |||||||||||| | ||||||  ||| ||    
T  38414489 aattggcactttccattcgtaaaaaatcggagcatgatctggcaaaatcggagtacga-tttgcgcagaatcataaaaataaatcatatttt-tgggcct 38414392  T
Q  117 gattttgttccaatctatgtgggatgcttttactataaatatag 160  Q
     |||||||| |||| ||||  |||| ||||||||||||||||||    
T  38414391 tattttgtttcaatttatgaaggattcttttactataaatatag 38414348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 17848283 - 17848382
Alignment:
Q  60 aaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtctgattttgttccaatctatgtgggatgcttttactataaatata 159  Q
    |||||||||| ||||||||| |||||  || ||||||||||||||||||  ||| |||||||||||||||| |||| ||||| |||||||||||||||||    
T  17848283 aaaatcggagcacgattttgcgcagagtcagaaaaataaaacgtattttt-gggcctgattttgttccaatttatgagggattcttttactataaatata 17848381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 247
Target Start/End: Complemental strand, 11578496 - 11578339
Alignment:
Q  87 gcataaaaataaaacgtattttaagggtc-tgattttgttccaatctatgtgggat-gcttttactataaatatagagcttgtatcagatgtaaacctag 184  Q
    |||||||||||||||||||||| |||| | |||||| |||||||| | || ||||| |||||||||||||||||||| ||| ||||||  ||||| || |    
T  11578496 gcataaaaataaaacgtatttttaggggcctgattt-gttccaatttttgagggattgcttttactataaatatagaccttatatcag-ggtaaatcttg 11578399  T
Q  185 agatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgtataga 247  Q
    |||||||   | ||| ||||||||||||||||||||||   ||||||||||||||||||||||    
T  11578398 agatagagtgggctg-aaacaagggtttagaagtcaac--aaaaaaactagggtttgtataga 11578339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 20146941 - 20146836
Alignment:
Q  144 ttttactataaatatagagcttgtatcagatgtaaacct--agagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttg 241  Q
    |||||||||||||||||| ||||||||| | ||||||||  |||| |||| |||  ||||||||||||||||||||||||| ||  ||||||||||||||    
T  20146941 ttttactataaatatagaccttgtatcaaa-gtaaaccttaagaggtaga-gagtttgaaaacaagggtttagaagtcaacaag--aaaactagggtttg 20146846  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  20146845 tatagagttt 20146836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 251
Target Start/End: Original strand, 35107214 - 35107324
Alignment:
Q  137 gggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagg 236  Q
    ||||| |||||||||||||||||||  |||||||| | |||||||| ||| |||| ||| || ||| |||| |||||||||||||| ||||||  |||||    
T  35107214 gggatacttttactataaatatagacattgtatcata-gtaaaccttgaggtaga-gagtctaaaaccaagagtttagaagtcaacaagaaaa--ctagg 35107309  T
Q  237 gtttgtatagagttt 251  Q
    |||||||||||||||    
T  35107310 gtttgtatagagttt 35107324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 12342768 - 12342667
Alignment:
Q  120 tttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtc 219  Q
    ||||||||||| | | | |||| ||||||||||||||||| |  |||||||||| |||||||| |||||||| | | ||||||  |||||||||||||||    
T  12342768 tttgttccaatttttttaggatacttttactataaatatacacattgtatcaga-gtaaaccttgagatagagggggctgaaacaaagggtttagaagtc 12342670  T
Q  220 aac 222  Q
    |||    
T  12342669 aac 12342667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 40032393 - 40032288
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  40032393 cttttactataaatatagaccttgtatcaga-gtaaactttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 40032298  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  40032297 tatagagttt 40032288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 20147082 - 20146987
Alignment:
Q  144 ttttactataaatatagagcttgtatcagatgtaaacct--agagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttg 241  Q
    |||||||||||||||||| ||||||||| | ||||||||  ||||||||| |||  |||||||||||||| |||||||||| ||  ||||||||||||||    
T  20147082 ttttactataaatatagaccttgtatcaaa-gtaaaccttgagagataga-gagtttgaaaacaagggttaagaagtcaacaag--aaaactagggtttg 20146987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 13910379 - 13910274
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  13910379 cttttactataaatatagaccttgtatcaga-gcaaacttggagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 13910284  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  13910283 tatagagttt 13910274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 19504680 - 19504575
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  19504680 cttttactataaatatagaccttgtatcaga-gcaaacttggagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 19504585  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  19504584 tatagagttt 19504575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 24162547 - 24162442
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  24162547 cttttactataaatatagaccttgtatcaga-gcaaactttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 24162452  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  24162451 tatagagttt 24162442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 35028476 - 35028538
Alignment:
Q  120 tttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacct 182  Q
    ||||||||||| | |  ||||| |||||||||||||||||||  |||||||||||||||||||    
T  35028476 tttgttccaattttttagggatacttttactataaatatagacattgtatcagatgtaaacct 35028538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 20589557 - 20589613
Alignment:
Q  120 tttgttccaatctatgtgggat-gcttttactataaatatagagcttgtatcagatg 175  Q
    ||||||||||| | || ||||| |||||||||||||||||||| |||||||||||||    
T  20589557 tttgttccaatttttgagggattgcttttactataaatatagaccttgtatcagatg 20589613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 27583655 - 27583593
Alignment:
Q  149 ctataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggttt 212  Q
    ||||||||||||| ||||||||||||||||| ||  || ||| |||| ||||||||||||||||    
T  27583655 ctataaatatagatcttgtatcagatgtaaatctttaggtag-agagtctgaaaacaagggttt 27583593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 37963267 - 37963186
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaa 221  Q
    |||| |||||||||||||||||||  |||||| ||| |||||||| |||||||| | | ||| |||||||||||||||| ||||    
T  37963267 ggatacttttactataaatatagactttgtataaga-gtaaaccttgagatagagggggctg-aaacaagggtttagaaatcaa 37963186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 216
Target Start/End: Complemental strand, 13828731 - 13828604
Alignment:
Q  87 gcataaaaataaaacgta-ttttaagggtctgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctaga 185  Q
    |||||||||||||||||| ||||| | ||  || ||||||||||| | |  ||||| |||||||||||||||||||  |||||| ||||| |||||| ||    
T  13828731 gcataaaaataaaacgtacttttatgcgtgaga-tttgttccaattttttagggattcttttactataaatatagaagttgtatgagatg-aaaccttga 13828634  T
Q  186 gatagaagagactgaaaacaagggtttagaa 216  Q
    || || || | |||||||||||| |||||||    
T  13828633 gagag-aggggctgaaaacaaggatttagaa 13828604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 42923846 - 42923739
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacct--agagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtt 239  Q
    ||||||||||||||||||| |||| |||| | ||||||||  ||||||||| ||| ||| |||||||||||||||| | ||||   | ||||||||| ||    
T  42923846 cttttactataaatatagaccttgaatcata-gtaaaccttgagagatagaggaggctg-aaacaagggtttagaatggcaac--aacaaaactaggatt 42923751  T
Q  240 tgtatagagttt 251  Q
    ||||||||||||    
T  42923750 tgtatagagttt 42923739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 19007549 - 19007631
Alignment:
Q  132 tatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    |||| ||||| ||||||||||||||||||   |||||||| | |||||||| |||||||| | | ||| ||||||||||||||||    
T  19007549 tatgagggattcttttactataaatataggctttgtatcata-gtaaaccttgagatagagggggctg-aaacaagggtttagaa 19007631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 32447764 - 32447546
Alignment:
Q  29 tcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtctgattttgttcca 128  Q
    ||||||||||||||||| |||||||||| | ||||| |||||||||||||| |||||  |||||||||||||||||||||  ||| ||||||||||| ||    
T  32447764 tcattcgtaaaaaatcggagcacgatctggaaaaattggagtacgattttgcgcagagtcataaaaataaaacgtatttt-tgggcctgattttgtttca 32447666  T
Q  129 atctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaa 227  Q
    || || |  |||| ||||||||||||||||||   |||||||||| |||||||| |||||||| | | ||| |||||||||||||| ||| ||||   |     
T  32447665 atttacgatggattcttttactataaatataggctttgtatcaga-gtaaaccttgagatagagggggctg-aaacaagggtttagaaaggcaac--aac 32447570  T
Q  228 aaaactagggtttgtatagagttt 251  Q
    ||||||||||||||||||||||||    
T  32447569 aaaactagggtttgtatagagttt 32447546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 24 - 216
Target Start/End: Original strand, 26945009 - 26945200
Alignment:
Q  24 acttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgta-ttttaagggtctgatttt 122  Q
    ||||| |||||||||||||||| || ||||||| ||||||||| ||||| |||||| |||||||||||||  |||||  || ||||| ||| ||||||||    
T  26945009 acttcccattcgtaaaaaatcggagtacgatctcgcaaaatcgaagtacaattttgcgcagaagcataaa--taaaatataattttatgggcctgatttt 26945106  T
Q  123 gttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    |||||||| |||| || |||||||||||||||||||| | |||||||||| | ||||||| |||||| | | | | ||||||||||||||||||    
T  26945107 gttccaatttatgaggaatgcttttactataaatataaaccttgtatcaggtataaaccttgagatatagggggccgaaaacaagggtttagaa 26945200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 33 - 251
Target Start/End: Original strand, 3390247 - 3390463
Alignment:
Q  33 tcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgta-ttttaagggtctgattttgttccaatc 131  Q
    ||||||||||| | |||||||||| |||||||||||| || |||| | ||||||| ||||| |||||||||| ||||| ||| ||||||| ||||||||     
T  3390247 tcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaatataaaacgtatttttatgggcctgatttggttccaatt 3390346  T
Q  132 tatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaa 230  Q
    |||| | ||| |||||||||||||||||||  ||||||||| | ||||||| |||||||| | | ||| |||||||||||||| ||| ||||   | |||    
T  3390347 tatgagagatacttttactataaatatagacattgtatcag-tataaaccttgagatagacggggctg-aaacaagggtttagaaaggcaac--aacaaa 3390442  T
Q  231 actagggtttgtatagagttt 251  Q
    |||||||||||||||||||||    
T  3390443 actagggtttgtatagagttt 3390463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 60 - 216
Target Start/End: Complemental strand, 3234147 - 3233995
Alignment:
Q  60 aaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtctgattttgttccaatctatgtgggatgcttttactataaatata 159  Q
    |||||||||| |||||||||||||||  || |||||  |||||||||||  ||| |||||||||||||||| ||||  ||||||||||||||||||||||    
T  3234147 aaaatcggagcacgattttgtgcagagtcagaaaaactaaacgtattttt-gggcctgattttgttccaatttatgaaggatgcttttactataaatata 3234049  T
Q  160 gagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    || |||||||||| |||||||||  ||||||| | | ||| |||||||| |||||||    
T  3234048 ga-cttgtatcag-tgtaaaccttaagatagagggggctg-aaacaaggatttagaa 3233995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 12186404 - 12186331
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||||||||||| | ||||||||| |||||||||| |||||||||| | ||||||||||||||||||||    
T  12186404 cttttactataaatataaaccttgtatcacatgtaaaccttgagatagaaggggctgaaaacaagggtttagaa 12186331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 3028185 - 3028081
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgt 242  Q
    ||||||||||||||||||| ||||||||| | |||||||  |||||| ||| | |||||||||||||||| |||| ||||   | |||||||||||||||    
T  3028185 cttttactataaatatagaccttgtatca-aagtaaaccatgagataaaaggggctgaaaacaagggtttggaaggcaac---acaaaactagggtttgt 3028090  T
Q  243 atagagttt 251  Q
    |||||||||    
T  3028089 atagagttt 3028081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 15346344 - 15346446
Alignment:
Q  117 gattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||  ||||||||| ||||||||| |||||||| | | ||| || |||||||||||||    
T  15346344 gattttgttccaatttatgagggatacttttactataaatatagacattgtatcag-tgtaaaccttgagatagagggggctg-aaccaagggtttagaa 15346441  T
Q  217 gtcaa 221  Q
     ||||    
T  15346442 ttcaa 15346446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 251
Target Start/End: Complemental strand, 16455782 - 16455653
Alignment:
Q  120 tttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagaga--tagaagagactgaaaacaagggtttagaag 217  Q
    ||||||||||| | |  ||||| | ||||||||||||||| | |||||||| | ||||||||| ||||  |||| ||| |||||||||||||||||||||    
T  16455782 tttgttccaatttttcagggatacctttactataaatatataccttgtatcgg-tgtaaaccttgagaggtaga-gagtctgaaaacaagggtttagaag 16455685  T
Q  218 tcaactagaaaaaactagggtttgtatagagttt 251  Q
    |||||    ||||||||||||||||| |||||||    
T  16455684 tcaac--acaaaaactagggtttgtacagagttt 16455653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 8995458 - 8995563
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| ||||||  ||||||||| | | || ||||||||||||||| ||| ||||   | ||||||||||||||    
T  8995458 cttttactataaatatagatcttgtatcaga-gtaaactgagagatagagggggct-aaaacaagggtttagaaaggcaac--aacaaaactagggtttg 8995553  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  8995554 tatagagttt 8995563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 9019905 - 9020010
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| ||||||  ||||||||| | | || ||||||||||||||| ||| ||||   | ||||||||||||||    
T  9019905 cttttactataaatatagatcttgtatcaga-gtaaactgagagatagagggggct-aaaacaagggtttagaaaggcaac--aacaaaactagggtttg 9020000  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  9020001 tatagagttt 9020010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 13057168 - 13057278
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaa-aaaactag 235  Q
    |||| |||||||||||||||||||  ||||||||| ||||||||| |||||||| | | ||| |||||||||||||| ||| ||   |||| ||||||||    
T  13057168 ggattcttttactataaatatagacattgtatcag-tgtaaaccttgagatagagggggctg-aaacaagggtttagaaaggca---agaacaaaactag 13057262  T
Q  236 ggtttgtatagagttt 251  Q
    ||||||||||||||||    
T  13057263 ggtttgtatagagttt 13057278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 17012029 - 17012127
Alignment:
Q  149 ctataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgtatagag 248  Q
    ||||||||||||| |||||||| || |||||||| |||||||| | | ||||| | |||||||||||||| |||   || ||||||||||||||||| ||    
T  17012029 ctataaatatagaccttgtatcgga-gtaaaccttgagatagaggggtctgaataaaagggtttagaagtaaac---aacaaactagggtttgtataaag 17012124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 15366990 - 15367045
Alignment:
Q  118 attttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcaga 173  Q
    ||||||||||||| |||| ||||| |||||||||||||||||||  ||||||||||    
T  15366990 attttgttccaatttatgagggatacttttactataaatatagacattgtatcaga 15367045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 13039728 - 13039804
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    |||| |||||||||||||||||||  ||||||||| ||||||||| |||||| | ||| ||| ||||||||||||||||    
T  13039728 ggattcttttactataaatatagatattgtatcag-tgtaaaccttgagatataggaggctg-aaacaagggtttagaa 13039804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 15541475 - 15541370
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| |||||||||||  ||||| | |||||||| | | ||| |||||||||||||| ||| |||  | | ||||||||||||||    
T  15541475 cttttactataaatatagaccttgtatcaga-ctaaactttgagatagagggggctg-aaacaagggtttagaaaggcaa--aaacaaaactagggtttg 15541380  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  15541379 tatagagttt 15541370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 25466510 - 25466434
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    |||| ||||||||||||||||||| ||| | ||||| |||||||| ||| |||| ||| ||||||||||||||||||||    
T  25466510 ggatacttttactataaatatagatcttttgtcaga-gtaaaccttgaggtaga-gaggctgaaaacaagggtttagaa 25466434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 28241656 - 28241551
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    |||| |||||||||||||| ||||||||||| | |||| |||||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  28241656 ctttcactataaatatagaccttgtatcaga-gcaaacttagagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 28241561  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  28241560 tatagagttt 28241551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 24338783 - 24338712
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    |||||||||||||||||||  ||||||||| ||||||||| |||||||| | | ||| ||||||||||||||||    
T  24338783 cttttactataaatatagacattgtatcag-tgtaaaccttgagatagagggggctg-aaacaagggtttagaa 24338712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 3632271 - 3632168
Alignment:
Q  145 tttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttgta 243  Q
    |||||||||||||||||  ||||||||| ||||||||| ||||||| || || |  |||||||||||||| ||| ||||   | ||||||||||||||||    
T  3632271 tttactataaatatagacattgtatcag-tgtaaaccttgagatag-agggagttgaaacaagggtttagaaaggcaac--aacaaaactagggtttgta 3632176  T
Q  244 tagagttt 251  Q
    ||||||||    
T  3632175 tagagttt 3632168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 11138224 - 11138361
Alignment:
Q  86 agcataaaaataaaacgtattttaagggtctgattttgttccaatct-atgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctag 184  Q
    |||||||||||||||  |||||| | || |||  ||||||| ||| | ||| ||||| ||||||||||| ||||| | ||||||||||| |||||||| |    
T  11138224 agcataaaaataaaatatatttttatgggctggatttgttctaattttatgcgggatacttttactatagatataaatcttgtatcaga-gtaaacctgg 11138322  T
Q  185 aga--tagaagagactgaaaacaagggtttagaagtcaac 222  Q
    |||  ||| |||| | ||||||||||||||||||| ||||    
T  11138323 agaagtag-agagccagaaaacaagggtttagaagccaac 11138361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 30729163 - 30729116
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagataga 191  Q
    ||||||||||||||||||| ||||||||||| |||||||| ||||||||    
T  30729163 cttttactataaatatagatcttgtatcaga-gtaaaccttgagataga 30729116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 25477248 - 25477358
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagg 236  Q
    |||| |||||||| ||||||||||  ||||||||| ||||||||| |||||||| | | |||||| ||||||||||| ||| ||||   | |||||||||    
T  25477248 ggattcttttactgtaaatatagacattgtatcag-tgtaaaccttgagatagagggggctgaaa-caagggtttagaaaggcaac--aacaaaactagg 25477343  T
Q  237 gtttgtatagagttt 251  Q
    |||| ||||||||||    
T  25477344 gtttatatagagttt 25477358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 1072212 - 1072107
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    |||||||||||||||||||  |||||||||| |||||| | ||||||||||   ||| |||||||||||||| ||| ||||   | |||||||| |||||    
T  1072212 cttttactataaatatagacattgtatcaga-gtaaactttgagatagaaggagctg-aaacaagggtttagaaaggcaac--aacaaaactagtgtttg 1072117  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  1072116 tatagagttt 1072107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 14507510 - 14507405
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||| ||| | |||| | |||||||| | | || ||||||||||||||| ||| ||||   | ||||||||||||||    
T  14507510 cttttactataaatatagaccttgtattaga-gcaaactttgagatagagggggct-aaaacaagggtttagaaaggcaac--aacaaaactagggtttg 14507415  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  14507414 tatagagttt 14507405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 17852521 - 17852626
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttg 241  Q
    |||||||||||||||||||  ||| |||||| |||||||| |||||||| | | ||| |||||||||||||||| | ||||   | |||||||| |||||    
T  17852521 cttttactataaatatagactttgaatcaga-gtaaaccttgagatagagggggctg-aaacaagggtttagaatgacaac--aacaaaactagagtttg 17852616  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  17852617 tatagagttt 17852626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 15533016 - 15532945
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||||||||||||| |||||||||||  ||||| | |||||||| | | ||| ||||||||||||||||    
T  15533016 cttttactataaatatagaccttgtatcaga-ctaaactttgagatagagggggctg-aaacaagggtttagaa 15532945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 24543118 - 24543081
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgat 54  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  24543118 aattgacacttctcattcgtaaaaaattgtagcacgat 24543081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 3396216 - 3396264
Alignment:
Q  60 aaaatcggagtacgattttgtgcagaagcataaaaataaaacgtatttt 108  Q
    |||||||||| ||||||| | | ||||| ||||||||||||||||||||    
T  3396216 aaaatcggagcacgatttcgcgtagaagaataaaaataaaacgtatttt 3396264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 36865410 - 36865643
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgta-ttttaagggtc 115  Q
    ||||| |||||  |||||||||||||||| |||||| ||| ||||||| |||| ||||||| | | ||||| |||||||||||||||| ||||| |||      
T  36865410 aattggcactttccattcgtaaaaaatcggagcacggtctggcaaaattggagcacgatttcgcgaagaagaataaaaataaaacgtatttttatgggct 36865509  T
Q  116 tgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag- 214  Q
    ||||||  ||||||| ||||   |||| ||||||||||||||||||  |||||||||||||||||||  ||||||| | | ||| ||||||||||||||     
T  36865510 tgatttgtttccaatttatgatagatgtttttactataaatatagacattgtatcagatgtaaaccttaagatagagggggctg-aaacaagggtttaga 36865608  T
Q  215 aagtcaactagaaaaaactagggtttgtatagagttt 251  Q
    ||| ||||   | ||||||||||||||||||||||||    
T  36865609 aaggcaac--aacaaaactagggtttgtatagagttt 36865643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 5623186 - 5622968
Alignment:
Q  29 tcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtctgattttgttcca 128  Q
    ||||||||| ||||||| |||||||||| |||||||||||||||||||||| |||||  ||  |||||||||| ||||||  ||| || |||||||||||    
T  5623186 tcattcgtacaaaatcggagcacgatctggcaaaatcggagtacgattttgcgcagagtcagcaaaataaaacatatttt-tgggcctaattttgttcca 5623088  T
Q  129 atctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaa 227  Q
    || |||| | ||| ||||||||||||||||||   ||||||||||  ||||||| |||||||| | | ||| |||||||||||||| ||| ||||   |     
T  5623087 atttatgagtgattcttttactataaatataggttttgtatcaga-ataaaccttgagatagagggggctg-aaacaagggtttagaaaggcaac--aac 5622992  T
Q  228 aaaactagggtttgtatagagttt 251  Q
    ||||||||||||||||||||||||    
T  5622991 aaaactagggtttgtatagagttt 5622968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 216
Target Start/End: Complemental strand, 30480952 - 30480767
Alignment:
Q  29 tcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtct-gattttgttcc 127  Q
    ||||||||||||||||||||||| |||| ||||| ||  || ||||||| | ||||||| |||||||||||||||||||| | || || ||||| |||||    
T  30480952 tcattcgtaaaaaatcgaagcacaatctggcaaa-tcaaagcacgatttcgcgcagaagaataaaaataaaacgtatttttatgggcttgatttggttcc 30480854  T
Q  128 aatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||| |||| |||||||||||||||||||||||||  |||||| || ||||||||| |||||||||| |  || ||||||||||||||||    
T  30480853 aatttatgagggatgcttttactataaatatagacattgtattag-tgtaaaccttgagatagaaggggttg-aaacaagggtttagaa 30480767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 35872834 - 35872642
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtc- 115  Q
    ||||||||||| ||||||||||||||||| |||| |     |||||||||||| ||||||| | ||||||| ||||||||||||| |||||| | || |     
T  35872834 aattgacactt-tcattcgtaaaaaatcggagcatg-----gcaaaatcggagcacgatttcgcgcagaagaataaaaataaaacatatttttatgggca 35872741  T
Q  116 tgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttaga 215  Q
    |||||| |||||||| |||| |||||||||||||||||||||||||  ||||||||| ||||||||| |||||||| | | ||| |||||||||||||||    
T  35872740 tgatttggttccaatttatgagggatgcttttactataaatatagacattgtatcag-tgtaaaccttgagatagagggggctg-aaacaagggtttaga 35872643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 251
Target Start/End: Original strand, 31035068 - 31035174
Alignment:
Q  144 ttttactataaatatagagcttgtatcagatgtaaacct--agagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttg 241  Q
    |||||||||||||||||| |||||||||||||||||| |  |||| ||| |||| |||||||||| ||||||||||||||| ||  ||||||||||||||    
T  31035068 ttttactataaatatagaccttgtatcagatgtaaactttgagaggtag-agagtctgaaaacaatggtttagaagtcaacaag--aaaactagggtttg 31035164  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  31035165 tatagagttt 31035174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 251
Target Start/End: Complemental strand, 14419552 - 14419421
Alignment:
Q  117 gattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-a 215  Q
    |||||||||||||| |||| | ||| |||||||||||||||||||  ||||||||| ||||||||| |||||||| | | ||| |||||||||||||| |    
T  14419552 gattttgttccaatttatgagtgatacttttactataaatatagacattgtatcag-tgtaaaccttgagatagagggggctg-aaacaagggtttagaa 14419455  T
Q  216 agtcaactagaaaaaactagggtttgtatagagttt 251  Q
    || ||||   ||||||||||||||||||||||||||    
T  14419454 aggcaac--aaaaaaactagggtttgtatagagttt 14419421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 251
Target Start/End: Complemental strand, 13858845 - 13858714
Alignment:
Q  117 gattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-a 215  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||  |||||||||| |||||||| |||||||| | |  || |||||||||||||| |    
T  13858845 gattttgttccaatttatgagggatacttttactataaatatagactttgtatcaga-gtaaaccttgagatagagggggatg-aaacaagggtttagaa 13858748  T
Q  216 agtcaactagaaaaaactagggtttgtatagagttt 251  Q
    || ||||   | ||||||||||||||||||||||||    
T  13858747 aggcaac--aacaaaactagggtttgtatagagttt 13858714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 40877993 - 40877901
Alignment:
Q  60 aaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtctgattttgttccaatctatgtgggatgcttttactata 153  Q
    |||||||||||||||||||| |||||  || | ||||||||||||||||  ||| |||||||||||||||| |||| ||||| |||||||||||    
T  40877993 aaaatcggagtacgattttgcgcagagtcagataaataaaacgtatttt-tgggcctgattttgttccaatttatgagggattcttttactata 40877901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 27911015 - 27911119
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgt 242  Q
    ||||||| |||||||| ||  |||||||| |||||||||| |||||||| | | |||||| |||||||||||||| |||| | ||||  |||||||||||    
T  27911015 cttttacaataaatattgacattgtatca-atgtaaaccttgagatagagggggctgaaa-caagggtttagaaggcaacaacaaaa--ctagggtttgt 27911110  T
Q  243 atagagttt 251  Q
    |||||||||    
T  27911111 atagagttt 27911119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 27957434 - 27957538
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgt 242  Q
    ||||||| |||||||| ||  |||||||| |||||||||| |||||||| | | |||||| |||||||||||||| |||| | ||||  |||||||||||    
T  27957434 cttttacaataaatattgacattgtatca-atgtaaaccttgagatagagggggctgaaa-caagggtttagaaggcaacaacaaaa--ctagggtttgt 27957529  T
Q  243 atagagttt 251  Q
    |||||||||    
T  27957530 atagagttt 27957538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 27107237 - 27107127
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagg 236  Q
    |||| |||||||||||||||||||  ||||||||| | ||||||| |||||||| | | ||| |||||||||||||| ||| ||||   | |||||||||    
T  27107237 ggattcttttactataaatatagacattgtatcag-tataaaccttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagg 27107142  T
Q  237 gtttgtatagagttt 251  Q
    |||||||||||||||    
T  27107141 gtttgtatagagttt 27107127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 33541728 - 33541618
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagg 236  Q
    |||| |||||||||||||||||||  ||||||||| ||||||| | |||||||| | | ||| |||||||||||||| ||| ||||   | |||||||||    
T  33541728 ggattcttttactataaatatagacattgtatcag-tgtaaacattgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagg 33541633  T
Q  237 gtttgtatagagttt 251  Q
    |||||||||||||||    
T  33541632 gtttgtatagagttt 33541618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 14807751 - 14807856
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  14807751 cttttactataaatatagaccttgtatcaga-gcaaactttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 14807846  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  14807847 tatagagttt 14807856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 175
Target Start/End: Original strand, 17847423 - 17847560
Alignment:
Q  38 aaaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaata-aaacgtattttaagggtctgattttgttccaatctatgt 136  Q
    |||||||| || ||| ||| ||||||| | |||||||||||  || || ||| ||||||| |||| |||||| ||  || ||||| |||||||  | ||     
T  17847423 aaaaatcgtagtacgttctggcaaaattgcagtacgattttacgctgatgcagaaaaatagaaacatattttcagcttcagattt-gttccaaattttga 17847521  T
Q  137 gggatgcttttactataaatatagagcttgtatcagatg 175  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  17847522 gggatacttttactataaatatagaccttgtatcagatg 17847560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 18810708 - 18810813
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  18810708 cttttactataaatatagatcttgtatcaga-gcaaacttggagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 18810803  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  18810804 tatagagttt 18810813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 15186069 - 15185974
Alignment:
Q  120 tttgttccaatct-atgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||||| | ||| ||||| ||||||||||||||||| |  |||||||||| |||||||| |||||| | | ||||| ||||||||||||||||    
T  15186069 tttgttccaattttatgagggatacttttactataaatataaactttgtatcaga-gtaaaccttgagataaaggtgactg-aaacaagggtttagaa 15185974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 18812893 - 18812964
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||||||||||||| ||||||||||| | |||| | |||||||| ||| ||| ||||||||||||||||    
T  18812893 cttttactataaatatagatcttgtatcaga-gcaaacttggagatagaggaggctg-aaacaagggtttagaa 18812964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 31162189 - 31162285
Alignment:
Q  120 tttgttccaatct-atgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||||| | ||| ||||| ||||||||||||||||||| ||||||||| | |||||||| |||| ||| | | || ||||||| |||||||||    
T  31162189 tttgttccaattttatgagggatacttttactataaatatagaccttgtatcata-gtaaaccttgagaaagagggggctaaaaacaaaggtttagaa 31162285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 41382673 - 41382744
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||||||||||||| |||| |||||| |||||||| |||||||| | | || |||||||||||||||||    
T  41382673 cttttactataaatatagaccttgaatcaga-gtaaaccttgagatagatggggct-aaaacaagggtttagaa 41382744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 21482317 - 21482398
Alignment:
Q  138 ggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaa 221  Q
    |||| |||||||||||||||||||  |||||||||| |||||| | ||||||||   ||||| |||||||||||||||| ||||    
T  21482317 ggattcttttactataaatatagaatttgtatcaga-gtaaactttgagatagagtggactg-aaacaagggtttagaaatcaa 21482398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 1225166 - 1225271
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||   ||||||||| ||||||||| |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  1225166 cttttactataaatataggcattgtatcag-tgtaaaccttgagatagagggggctg-aaacaagggtttagaaagacaac--aacaaaactagggtttg 1225261  T
Q  242 tatagagttt 251  Q
    || |||||||    
T  1225262 taaagagttt 1225271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 15072710 - 15072815
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| |||||||||||  ||||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||| ||||||    
T  15072710 cttttactataaatatagaccttgtatcaga-ctaaactttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactatggtttg 15072805  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  15072806 tatagagttt 15072815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 27826986 - 27827091
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||  ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  27826986 cttttactataaatataggccttgtatcaga-gcaaacttggagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 27827081  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  27827082 tatagagttt 27827091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 27829297 - 27829402
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||  ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  27829297 cttttactataaatataggccttgtatcaga-gcaaacttggagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 27829392  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  27829393 tatagagttt 27829402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 6375978 - 6376019
Alignment:
Q  132 tatgtgggatgcttttactataaatatagagcttgtatcaga 173  Q
    |||| ||||| ||||||||||||||||||| |||||||||||    
T  6375978 tatgcgggatacttttactataaatatagaccttgtatcaga 6376019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 251
Target Start/End: Original strand, 79711 - 79917
Alignment:
Q  39 aaaatcgaagcacgatctagcaaaatcggagtacgattttgtgcagaagcataaaaataaaacgtattttaagggtctgattttgttccaatctatgtgg 138  Q
    ||||||| |||||||||| |||||||||||| ||| ||| | | ||   || ||||||||||||||||||  ||| |||||||||||||||| |||| ||    
T  79711 aaaatcggagcacgatctggcaaaatcggagcacggtttagcgtagt--cagaaaaataaaacgtattttt-gggcctgattttgttccaatttatgagg 79807  T
Q  139 gatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactaggg 237  Q
    ||| ||||||||||||||||||   ||||||||| ||||||||| |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||    
T  79808 gattcttttactataaatatagtttttgtatcag-tgtaaaccttgagatagagggggctg-aaacaagggtttagaaagacaac--aataaaactaggg 79903  T
Q  238 tttgtatagagttt 251  Q
    ||||||||||||||    
T  79904 tttgtatagagttt 79917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 1958 - 1862
Alignment:
Q  152 taaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgtatagagttt 251  Q
    |||||||||| ||||||||||||||||||||||||||||| | | ||| |||||||||||||||||||||| ||  ||||||||||||||||||||||||    
T  1958 taaatatagaccttgtatcagatgtaaacctagagatagaggtggctg-aaacaagggtttagaagtcaacaag--aaaactagggtttgtatagagttt 1862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 251
Target Start/End: Complemental strand, 16177 - 16049
Alignment:
Q  120 tttgttccaa-tctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagt 218  Q
    |||||||||| | |||| ||||| |||||||||||||||||||  |||||||||| ||||||||  ||||||| | |  || ||| ||||||||||||||    
T  16177 tttgttccaaatttatgagggatacttttactataaatatagattttgtatcaga-gtaaaccttaagatagagggggttg-aaataagggtttagaagt 16080  T
Q  219 caactagaaaaaactagggtttgtatagagttt 251  Q
    |||| ||  ||||||||||||||||||||||||    
T  16079 caacaag--aaaactagggtttgtatagagttt 16049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 16981 - 16878
Alignment:
Q  144 ttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagtcaactagaaaaaactagggtttgta 243  Q
    ||||| |||||||||| | ||||||||||| |||||||| |||||||| ||| ||||||||||||||||  ||| ||||   | ||||||||||||||||    
T  16981 ttttaatataaatataaaccttgtatcaga-gtaaaccttgagatagaggaggctgaaaacaagggtttgaaagacaac---acaaaactagggtttgta 16886  T
Q  244 tagagttt 251  Q
    ||||||||    
T  16885 tagagttt 16878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 85131 - 85235
Alignment:
Q  88 cataaaaataaaacgtattttaagggtctgattttgttccaatctatgtgggatgcttttactataaatatagagcttgtatcagatgtaaacctagaga 187  Q
    |||||||||||||| ||||||  |  ||||||||||||||||| |||| ||||| ||||||||||||||||||   |||||||| | |||||||| ||||    
T  85131 cataaaaataaaacatattttttg--tctgattttgttccaatttatgagggattcttttactataaatataggctttgtatca-aagtaaaccttgaga 85227  T
Q  188 tagaagag 195  Q
    ||||||||    
T  85228 tagaagag 85235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 85084 - 85131
Alignment:
Q  17 aattgacacttctcattcgtaaaaaatcgaagcacgatctagcaaaatc 65  Q
    ||||||||||| ||||||||||||||||| | |||||||||||||||||    
T  85084 aattgacactt-tcattcgtaaaaaatcggaacacgatctagcaaaatc 85131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 1166 - 1061
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    |||| |||||||||||||| ||||||||||| | |||| | |||||||||| | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  1166 ctttcactataaatatagaccttgtatcaga-gcaaactttgagatagaaggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 1071  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  1070 tatagagttt 1061  T

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Target: scaffold0250 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 2833 - 2938
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| ||||||||||| | |||| | |||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  2833 cttttactataaatatagaacttgtatcaga-gcaaactttgagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 2928  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  2929 tatagagttt 2938  T

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Target: scaffold0038 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 41818 - 41713
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttg 241  Q
    |||| |||||||||||||| ||||||||||| | |||| |||||||||| | | ||| |||||||||||||| ||| ||||   | ||||||||||||||    
T  41818 ctttcactataaatatagaccttgtatcaga-gcaaacttagagatagagggggctg-aaacaagggtttagaaaggcaac--aacaaaactagggtttg 41723  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  41722 tatagagttt 41713  T

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Target: scaffold0133 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 4773 - 4841
Alignment:
Q  149 ctataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaagt 218  Q
    ||||||||||||| ||||||||||| |||||||| |||||||| | | ||||||| |||| |||||||||    
T  4773 ctataaatatagaccttgtatcaga-gtaaaccttgagatagaggggtctgaaaaaaaggatttagaagt 4841  T

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Target: scaffold0031 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 79140 - 79243
Alignment:
Q  145 tttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttag-aagtcaactagaaaaaactagggtttgta 243  Q
    ||||||||||||||||| |||| |||||| ||||| || |||||||| | | || ||||||||||||||| ||| ||||   | ||||||||||||||||    
T  79140 tttactataaatatagaccttgaatcaga-gtaaaacttgagatagagggggct-aaaacaagggtttagaaaggcaac--aacaaaactagggtttgta 79235  T
Q  244 tagagttt 251  Q
    ||||||||    
T  79236 tagagttt 79243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 11808 - 11703
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa-gtcaactagaaaaaactagggtttg 241  Q
    ||||||||||||||||||| |||| |||||| |||||||| |||||||| | | ||| ||||| || ||||||| | ||||   | ||||||||||||||    
T  11808 cttttactataaatatagaccttgaatcaga-gtaaacctggagatagagggggctg-aaacagggatttagaatgacaac--aacaaaactagggtttg 11713  T
Q  242 tatagagttt 251  Q
    ||||||||||    
T  11712 tatagagttt 11703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0339 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 3950 - 4021
Alignment:
Q  143 cttttactataaatatagagcttgtatcagatgtaaacctagagatagaagagactgaaaacaagggtttagaa 216  Q
    ||||||||||||||||||| |||||||||||  ||||| | |||||||| | | ||| ||||||||||||||||    
T  3950 cttttactataaatatagaccttgtatcaga-ctaaactttgagatagagggggctg-aaacaagggtttagaa 4021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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