View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_88 (Length: 249)
Name: NF11703_low_88
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_88 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 20338293 - 20338530
Alignment:
| Q |
1 |
tccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccataaacttacagaggacagcctctatgtcgttg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
20338293 |
tccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccacaaacttacagaggacagcctctatgtcgttg |
20338392 |
T |
|
| Q |
101 |
gttcctacaatggattactctgcttgtatggtcagtttttcacccctaattataatagtgtgacatggcttcgtttttggaaccctgccataaggaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20338393 |
gttcctacaatggattactctgcttgtatggtcagtttttcacccctaattataatagtgtgacatggcttcgtttttggaaccctgccacaaggaaaat |
20338492 |
T |
|
| Q |
201 |
atctgcaaaattagggttctctattcacaacggcctat |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
20338493 |
atctgcaaaattagggttctctattcacaacggcctat |
20338530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 20141520 - 20141303
Alignment:
| Q |
3 |
cttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccataaacttacaga---ggacagcctctatgtcgtt |
99 |
Q |
| |
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|||||||||||||||||||||| | || ||||||||||||||| |||| |||||||||||| ||||| ||||| |||| || | | |||| ||| ||| |
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| T |
20141520 |
cttcactgtttttcgtttgctccacaaccctccaatcattatcaatctaccagaagatcctaaccatcaacttgcagacaagggctgtctctttgttgtt |
20141421 |
T |
|
| Q |
100 |
ggttcctacaatggattactctgcttgtatggtcagtttttcacccctaattataatagtgtgacatggcttcgtttttggaaccctgccataaggaaaa |
199 |
Q |
| |
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||||||| |||||||||||| || |||| |||||||||||||| || ||| |||||||||||| | |||||||||||||||||| |||| ||||||| |
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| T |
20141420 |
ggttcctgcaatggattactttgtttgttcagtcagtttttcacctctgattttaatagtgtgacgttgcttcgtttttggaacccagccacgaggaaaa |
20141321 |
T |
|
| Q |
200 |
tatctgcaaaattagggt |
217 |
Q |
| |
|
| ||| |||||||||||| |
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|
| T |
20141320 |
tgtctccaaaattagggt |
20141303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 20126840 - 20126618
Alignment:
| Q |
3 |
cttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccataaacttacaga---ggacagcctctatgtcgtt |
99 |
Q |
| |
|
|||||||||||||| | | ||| |||| |||||| ||||| || |||||||| | ||||| ||| || ||||| || | |||| |||| | ||| ||| |
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| T |
20126840 |
cttcactgtttttcatctactccagaaccctccattcattttcaatcttccaaaggatccatactatcaacttgcaaacaaggactgcctgtttgttgtt |
20126741 |
T |
|
| Q |
100 |
ggttcctacaatggattactctgcttgtatggtcagtttttcacccctaattataatagtgtgacatggcttcgtttttggaaccctgccataaggaaaa |
199 |
Q |
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||||||| |||||||||||||||||||| |||| || |||||||| | |||| ||||||||| || ||||||||||||||||| || |||| | || || |
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| T |
20126740 |
ggttcctgcaatggattactctgcttgtttggttaggttttcacctccaattttaatagtgttacgtggcttcgtttttggaatccagccacatgggcaa |
20126641 |
T |
|
| Q |
200 |
tatctgcaaaattagggttctct |
222 |
Q |
| |
|
|||||| ||||||||||| |||| |
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| T |
20126640 |
tatctgaaaaattagggtactct |
20126618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 20134018 - 20133802
Alignment:
| Q |
3 |
cttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccataaacttacaga---ggacagcctctatgtcgtt |
99 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||| | | ||||||||||||||||| ||||| ||||||| | |||| | | ||||| ||| |
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|
| T |
20134018 |
cttcactgtttttcgtttgctccagaaccctccaatcat-accaatcttccagaagatcctaaccatcaacttacgaacaaggactgtcattatgttgtt |
20133920 |
T |
|
| Q |
100 |
ggttcctacaatggattactctgcttgtatggtcagtttttcacccctaattataatagtgtgacatggcttcgtttttggaaccctgccataaggaaaa |
199 |
Q |
| |
|
||||| | |||||||||||||||||||| |||| ||||||| | | |||| ||||||||| |||| ||||| || |||||||| |||| ||||||| |
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| T |
20133919 |
ggttcatgcaatggattactctgcttgttctgtcaatttttcaactccaattttaatagtgtaacatttcttcgcttctggaacccagccacgaggaaaa |
20133820 |
T |
|
| Q |
200 |
tatctgcaaaattagggt |
217 |
Q |
| |
|
|||| |||||||||||| |
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|
| T |
20133819 |
tatcaccaaaattagggt |
20133802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 22062999 - 22063072
Alignment:
| Q |
1 |
tccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccataaact |
74 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||||||||||||| |||||||| || ||||||||||| |||| |
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|
| T |
22062999 |
tccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaaaaaatccttaccatcaact |
22063072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 22069468 - 22069533
Alignment:
| Q |
1 |
tccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttac |
66 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||||||||||||| |||||||| |||||||||| |
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|
| T |
22069468 |
tccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttac |
22069533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 6865501 - 6865437
Alignment:
| Q |
1 |
tccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatcctta |
65 |
Q |
| |
|
|||||||||||| |||||||||| ||| | ||||||||||||||| ||||||| | ||||||||| |
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|
| T |
6865501 |
tccttcactgttcttcgtttgcttgagtaccctccaatcattatcaatcttcctggagatcctta |
6865437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 20351462 - 20351535
Alignment:
| Q |
2 |
ccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccataaactt |
75 |
Q |
| |
|
||||||| |||||||||||||| | ||||||||| |||| || ||||||||||||||||| || |||||||| |
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|
| T |
20351462 |
ccttcacagtttttcgtttgctacaagatcctccaagcattttcaatcttccagaagatcctcactataaactt |
20351535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 22080214 - 22080278
Alignment:
| Q |
2 |
ccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttac |
66 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||||| ||||||||| ||||| || || |||||||| |
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|
| T |
22080214 |
ccttcacagttttccgtttgctcgagaaccctcccatcattatcaatctttcaaaatatccttac |
22080278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 6865336 - 6865299
Alignment:
| Q |
166 |
tggcttcgtttttggaaccctgccataaggaaaatatc |
203 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| |
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|
| T |
6865336 |
tggcttcgtttttggaacccagccataaggaaattatc |
6865299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 20375177 - 20375133
Alignment:
| Q |
31 |
cctccaatcattatcgatcttccagaagatccttaccataaactt |
75 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| || ||||| |
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|
| T |
20375177 |
cctccaatcattttcaatcttccagaagatccttactatcaactt |
20375133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 22080390 - 22080438
Alignment:
| Q |
166 |
tggcttcgtttttggaaccctgccataaggaaaatatctgcaaaattag |
214 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| |||||| | |||||||| |
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|
| T |
22080390 |
tggcttcgtttttggaacccagccacaaggacaatatcagaaaaattag |
22080438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 15960577 - 15960640
Alignment:
| Q |
2 |
ccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatcctta |
65 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||||||| | ||||||| |||||||||| |
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|
| T |
15960577 |
ccttcacagtttttcgtttgctcgaaaaccctccaatcatttttaatcttcccaaagatcctta |
15960640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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