View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_89 (Length: 248)
Name: NF11703_low_89
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_89 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 12929651 - 12929421
Alignment:
| Q |
1 |
ttcattcacaattactattatcccagccacagaggaaccatgcccagagcagtttcaaggtatttcttcattattattatttttggaaagataaatgttt |
100 |
Q |
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| T |
12929651 |
ttcattcacaattattattatcccagccacagaggaaccatgcccagagcagtttcaaggtatttcttcattattattatttttggaaagataaatgttt |
12929552 |
T |
|
| Q |
101 |
taatatagttaattttaatacattttatcaaagtaattaaatagtttcaatttgtcaacaaataacaaacaattttctgtnnnnnnnttgaaggtttaaa |
200 |
Q |
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| T |
12929551 |
taatatagttaattttaatacattttatcaaag----taaatagtttcaacttgtcaacaaataacaaacaactttctgtaaaaaaattgaaggtttaaa |
12929456 |
T |
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| Q |
201 |
taatacctgtccatgtaatgtatacatgctactctctgctt |
241 |
Q |
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| T |
12929455 |
taatacctgtcc------tgtatacatgctactctttgctt |
12929421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 12910148 - 12910211
Alignment:
| Q |
1 |
ttcattcacaattactattatcccagccacagaggaaccatgcccagagcagtttcaaggtatt |
64 |
Q |
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||||||||||||||||||||||||| ||||| |||||||| |||| ||| |||||||||||||| |
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| T |
12910148 |
ttcattcacaattactattatcccaaccacaaaggaaccaggcccggagaagtttcaaggtatt |
12910211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 12918717 - 12918611
Alignment:
| Q |
33 |
aggaaccatgcccagagcagtttcaaggtatttctt-cattattattatttttggaaagataaatgttttaatatag-ttaattttaatacattttatca |
130 |
Q |
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| T |
12918717 |
aggaaccatgcccggagaaatttcaaggtatttctttcattattattgtttttggaaagatacatattttattgtagtttaatcttgatacatttgatca |
12918618 |
T |
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| Q |
131 |
aagtaat |
137 |
Q |
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| T |
12918617 |
atgtaat |
12918611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 21116007 - 21116179
Alignment:
| Q |
1 |
ttcattcacaattactattatcccagccacagaggaaccatgcccagagcagtttcaaggt----atttcttcattattattatttttggaaagataaat |
96 |
Q |
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|||||||||||||||||||||||||||| || |||||||| ||| |||||||||||||||| ||||| | ||||||||||||||||||||||||||| |
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| T |
21116007 |
ttcattcacaattactattatcccagccccaaaggaaccaagcctagagcagtttcaaggtattcatttcattattattattatttttggaaagataaat |
21116106 |
T |
|
| Q |
97 |
gttttaatatag-ttaattttaatacattttatcaaagtaattaaatagtttcaatttgtcaacaaataacaaacaat |
173 |
Q |
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| T |
21116107 |
g-tttaatatagtttaattttaatacattttatcaaag----taaatagtttcaatttgtcaacaaataacaaacaat |
21116179 |
T |
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