View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_92 (Length: 245)
Name: NF11703_low_92
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_92 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 3389071 - 3389306
Alignment:
| Q |
1 |
tctcccactctctttgcaagtctcgtaaagttttttctacttgtcttcggtaatggttcattcttgacaacaactgatggttccattttcacatcaagtg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3389071 |
tctcccactctctttgcaagtctcgtaaagttttttctacttgtcttcagtaatggttcattcttgacaacaactgatggttccattttcacatcaagtg |
3389170 |
T |
|
| Q |
101 |
atggttgtacttcctcttcagctgatggatccatttttacattgggtgacggtttcaattccacttcatgtaatggctccatttttgcgtcactggatgg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3389171 |
atggttgtacttcctcttcagctgatggatccatttttacattgggtgacggtttcaattccacttcatgtaatggctccatttttgcgtcactggatgg |
3389270 |
T |
|
| Q |
201 |
ggcaacttccatagcatttgatgacttgatgtccat |
236 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||| |
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|
| T |
3389271 |
ggcaacttccatagcatttgatgactcgatttccat |
3389306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 31178029 - 31177846
Alignment:
| Q |
1 |
tctcccactctctttgcaagtctcgtaaagttttttctacttgtcttcggtaatggttcattcttgacaacaactgatggttccattttcacatcaagtg |
100 |
Q |
| |
|
||||||| ||||||||||||||| || ||| |||||||| |||||||||||| |||||||||||||||||||| | |||||||| ||||||||||||||| |
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| T |
31178029 |
tctcccagtctctttgcaagtcttgtgaagatttttctatttgtcttcggtattggttcattcttgacaacaagtaatggttccgttttcacatcaagtg |
31177930 |
T |
|
| Q |
101 |
atggttgtacttcctcttcagctgatggatccatttttacattgggtgacggtttcaattccacttcatgtaatggctccattt |
184 |
Q |
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|||| || || ||||||||||||||||| ||| |||| ||||| ||||| |||| || ||||||||||||||||||||| |||| |
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| T |
31177929 |
atggctgcacgtcctcttcagctgatggctccgttttcacattaggtgatggttgcatttccacttcatgtaatggctcaattt |
31177846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 3366447 - 3366320
Alignment:
| Q |
1 |
tctcccactctctttgcaagtctcgtaaagttttttctacttgtcttcggtaatggttcattcttgacaacaactgatggttccattttcacatcaagtg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||| |||| || ||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
3366447 |
tctcccactctctttgcaagtcttgtaaagatttttctatttgtgtttggtaatggttcattcttgacaacaagtgatggttccattttcacattgggtg |
3366348 |
T |
|
| Q |
101 |
atggttgtacttcctcttcagctgatgg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
3366347 |
atggttgtacttcctcttcagctgatgg |
3366320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 3319859 - 3319707
Alignment:
| Q |
74 |
ctgatggttccattttcacatcaagtgatggttgtacttcctcttcagctgatggatccatttttacattgggtgacggtttcaattccacttcatgtaa |
173 |
Q |
| |
|
||||||| ||| |||||| || ||||||||||||| |||| |||||||||||| || |||||||||||||||| |||| ||||||||||||||||| |
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| T |
3319859 |
ctgatggctccgttttcaaattcagtgatggttgtatttccacttcagctgatgtctcggtttttacattgggtgatggttggaattccacttcatgtaa |
3319760 |
T |
|
| Q |
174 |
tggctccatttttgcgtcactggatggggcaacttccatagcatttgatgact |
226 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||||||||| ||||||||||| |
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|
| T |
3319759 |
tggctccatttttgcgtcagtagatgggtcaacttccatagtatttgatgact |
3319707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 3319999 - 3319929
Alignment:
| Q |
3 |
tcccactctctttgcaagtctcgtaaagttttttctacttgtcttcggtaatggttcattcttgacaacaa |
73 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
3319999 |
tcccactctctttgccagtcttgtaaagatttttctacttgtcttcggtaatggttcatttttgacaacaa |
3319929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 3319925 - 3319844
Alignment:
| Q |
56 |
gttcattcttgacaacaactgatggttccattttcacatcaagtgatggttgtacttcctcttcagctgatggatccatttt |
137 |
Q |
| |
|
||||||| |||| ||||| |||||| ||||||||||||| | ||||| |||||||||||||||||||||||| ||| |||| |
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|
| T |
3319925 |
gttcattattgataacaagtgatggctccattttcacattaggtgataattgtacttcctcttcagctgatggctccgtttt |
3319844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 15805407 - 15805257
Alignment:
| Q |
1 |
tctcccactctctttgcaagtctcgtaaagttttttctacttgtcttcggtaatggttcattcttgacaacaactgatggttccattttcacatcaagtg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||||||| ||| |
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| T |
15805407 |
tctcccactctctttgcaagtcttgtaaatatttttctatttgcgttcggtaatggttcattcttg---acaagtgatggttccattttcacatcgggtg |
15805311 |
T |
|
| Q |
101 |
atggttgtacttcctcttcagctgatggatccatttttacattgggtgacggtt |
154 |
Q |
| |
|
|||||||| ||||||||| ||||||||| || ||||| ||||| ||||| |||| |
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|
| T |
15805310 |
atggttgtgcttcctctttagctgatggctctattttcacattaggtgatggtt |
15805257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 186
Target Start/End: Complemental strand, 12597370 - 12597280
Alignment:
| Q |
96 |
aagtgatggttgtacttcctcttcagctgatggatccatttttacattgggtgacggtttcaattccacttcatgtaatggctccattttt |
186 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| |||| |||| ||||| |||| || |||||||||||||||||||| |||||| |
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|
| T |
12597370 |
aagtgatggtcgtacttcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttcatgtaatggctcaattttt |
12597280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 186
Target Start/End: Complemental strand, 30420020 - 30419887
Alignment:
| Q |
53 |
atggttcattcttgacaacaactgatggttccattttcacatcaagtgatggttgtacttcctcttcagctgatggatccatttttacattgggtgacgg |
152 |
Q |
| |
|
|||||||||||| || || || ||||| || ||||||||||||| |||| ||||||||||||||||| ||||||||| ||||| ||||| || || |
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|
| T |
30420020 |
atggttcattctggataataagtgatgcctcatttttcacatcaagggatgattgtacttcctcttcaggtgatggatctattttcacattaggctgcgt |
30419921 |
T |
|
| Q |
153 |
tttcaattccacttcatgtaatggctccattttt |
186 |
Q |
| |
|
|| || ||||||||| | ||||||||||||||| |
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|
| T |
30419920 |
ttgcacttccacttcgggcaatggctccattttt |
30419887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 179
Target Start/End: Complemental strand, 15805229 - 15805136
Alignment:
| Q |
86 |
ttttcacatcaagtgatggttgtacttcctcttcagctgatggatccatttttacattgggtgacggtttcaattccacttcatgtaatggctc |
179 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| || |||| |||||||| ||| | |||| | || || ||||||||||||||||||||| |
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|
| T |
15805229 |
ttttcacatcaagtgatggttgtagttgctcttcggccgatgcctccattttcacactaagtgatgattgcacttccacttcatgtaatggctc |
15805136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 15805289 - 15805236
Alignment:
| Q |
74 |
ctgatggttccattttcacatcaagtgatggttgtacttcctcttcagctgatg |
127 |
Q |
| |
|
||||||| || |||||||||| | ||||||||||||| |||||||||||||||| |
|
|
| T |
15805289 |
ctgatggctctattttcacattaggtgatggttgtacatcctcttcagctgatg |
15805236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 6903612 - 6903719
Alignment:
| Q |
75 |
tgatggttccattttcacatcaagtgatggttgtacttcctcttcagctgatggatccatttttacattgggtgacggtttcaattccacttcatgtaat |
174 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| |||||| | ||| ||| |||| ||||| | ||| |||| || ||||| |||| ||||| |
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|
| T |
6903612 |
tgatggttccatcttcacatcaagtgatggttgcacttcatcttcaagtaatgactcccttttcacattagatgatggttgcacttccagttcaggtaat |
6903711 |
T |
|
| Q |
175 |
ggctccat |
182 |
Q |
| |
|
|||||||| |
|
|
| T |
6903712 |
ggctccat |
6903719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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