View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11703_low_96 (Length: 239)
Name: NF11703_low_96
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_96 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4323809 - 4324032
Alignment:
| Q |
1 |
tagaacacaggcagtacaacctggcctgtggttctgtgacgcaccattatttgccacaactcttgaagacaccacttggaatcggcgtagttttttgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4323809 |
tagaacacaggcagtacaacctggcctgtggttctgtgacgcaccattatttgccacaactcttgaagacaccacttggaatcggcgtagttttttgaga |
4323908 |
T |
|
| Q |
101 |
agactataacagaaattttagaagattcaattgcgtgaactagcgatggggatatgtgatctcctctttgaagcgactgatcatccttgaaaatgacgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4323909 |
agactataacagaaattttagaagattcaattgcgtgaactagcgatggggatatgtgatctcctctttgaagcgactgatcatccttgaaaatgaggat |
4324008 |
T |
|
| Q |
201 |
tccggcgttctgaagagatgatgt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4324009 |
tccggcgttctgaagagatgatgt |
4324032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 4356878 - 4356661
Alignment:
| Q |
1 |
tagaacacaggcagtacaacctggcctgtggttctgtgacgcaccattatttgccacaactcttgaagacaccacttggaatcggcgtagttttttgaga |
100 |
Q |
| |
|
|||||||| |||||||| || |||||| | || |||| || | ||||||||| ||||||| | |||||||| ||||| || |||||||| |||| |
|
|
| T |
4356878 |
tagaacactggcagtaccacttggcctatagtactgtaacacgacattatttgaaccaactctcgcagacaccatgacgaatcagcatagtttttggaga |
4356779 |
T |
|
| Q |
101 |
agactataacagaaattttagaagattcaattgcgtgaactagcgatggggatatgtgatctcctctttgaagcgactgatcatccttgaaaatgacgat |
200 |
Q |
| |
|
|||| ||||||| |||| |||| ||| ||||| || | || ||||| ||||||||| |||||||||| |||||||||||| |||||||| | | || |
|
|
| T |
4356778 |
agacgataacagcaattctagagatttcgattgcttggagtaacgatgtggatatgtgctctcctctttcaagcgactgatcgtccttgaagacaataat |
4356679 |
T |
|
| Q |
201 |
tccggcgttctgaagaga |
218 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
4356678 |
tccggcgttttgaagaga |
4356661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 4332775 - 4332659
Alignment:
| Q |
1 |
tagaacacaggcagtacaacctggcctgtggttctgtgacgcaccattatttgccacaactcttgaagacaccacttggaatcggcgtagttttttgaga |
100 |
Q |
| |
|
||||||||||||||||| ||||| | ||||||||| || | |||| |||||| |||||||||||||||||| | ||||| ||||||||||| |||| |
|
|
| T |
4332775 |
tagaacacaggcagtaccacctgtcttgtggttctaaaacactccataatttgcatcaactcttgaagacaccattgcgaatcagcgtagtttttggaga |
4332676 |
T |
|
| Q |
101 |
agactataacagaaatt |
117 |
Q |
| |
|
|||| | |||||||||| |
|
|
| T |
4332675 |
agacaacaacagaaatt |
4332659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 4129531 - 4129653
Alignment:
| Q |
1 |
tagaacacaggcagtacaacctggcctgtggttctgtgacgcaccattatttgccacaactcttgaagacaccacttggaatcggcgtagttttttgaga |
100 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||||| || | ||| |||||| |||||| || | ||||||| ||||| ||||||||||| |||| |
|
|
| T |
4129531 |
tagaacacaggcagtaccacctgtccagtggttctgtaacactccagtatttgaatcaactcctgcatacaccacggtgaatccgcgtagtttttggaga |
4129630 |
T |
|
| Q |
101 |
agactataacagaaattttagaa |
123 |
Q |
| |
|
| || |||| ||||||| ||||| |
|
|
| T |
4129631 |
atacaataatagaaattctagaa |
4129653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 193
Target Start/End: Original strand, 5358165 - 5358301
Alignment:
| Q |
57 |
caactcttgaagacaccacttggaatcggcgtagttttttgagaagactataacagaaattttagaagattcaattgcgtgaactagcgatggggatatg |
156 |
Q |
| |
|
|||||||| ||||||||| | || || || || ||| ||||||| || ||||||||||||| |||| || |||||| || | ||| ||| || ||| |
|
|
| T |
5358165 |
caactcttcaagacaccattgcgattctgcataatttgttgagaaaacgataacagaaatttgagaatcttgaattgcttgcattagtgattttgaaatg |
5358264 |
T |
|
| Q |
157 |
tgatctcctctttgaagcgactgatcatccttgaaaa |
193 |
Q |
| |
|
|||||||| |||||||| || ||||||||||| |||| |
|
|
| T |
5358265 |
tgatctcccctttgaagtgaatgatcatccttaaaaa |
5358301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University