View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_97 (Length: 239)
Name: NF11703_low_97
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_97 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33270491 - 33270713
Alignment:
| Q |
1 |
taggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaaatccacaagaaaattaacagttaaatgatgaaattaattaagtacctg |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33270491 |
taggtggaacacacttagaggtcccaagtcaataccaccagaccaacccaaaatccacaagaaaattaacagttaaatgatgaaattaattaagtacctg |
33270590 |
T |
|
| Q |
101 |
aaaactccaaatgcaacttgaaaaattccagcaaataatgttacagtaaagacaaaatttctgtaaccatcatgatttaaatctggatcaaccactttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33270591 |
aaaactccaaatgcaacttgaaaaattccagcaaataatgttacagtaaagacaaaatttctgtaaccatcatgatttaaatctggatcaaccactttgt |
33270690 |
T |
|
| Q |
201 |
gacataaggaagatagcagcagt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
33270691 |
gacataaggaagatagcagcagt |
33270713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 12761551 - 12761523
Alignment:
| Q |
19 |
aggtcccaagtcaataccaccagaccaac |
47 |
Q |
| |
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|
| T |
12761551 |
aggtcccaagtcaataccaccagaccaac |
12761523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 16773859 - 16773814
Alignment:
| Q |
6 |
ggagcacacttagaggtcccaagtcaataccaccagaccaactcaa |
51 |
Q |
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| T |
16773859 |
ggagcacactcccaggtcccaagtcaataccaccagaccaactcaa |
16773814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 22760915 - 22760874
Alignment:
| Q |
6 |
ggagcacacttagaggtcccaagtcaataccaccagaccaac |
47 |
Q |
| |
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|
| T |
22760915 |
ggagcacactcccaggtcccaagtcaataccaccagaccaac |
22760874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 12994400 - 12994445
Alignment:
| Q |
6 |
ggagcacacttagaggtcccaagtcaataccaccagaccaactcaa |
51 |
Q |
| |
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|||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
12994400 |
ggagcacactcccaggtcccaagtcaataccactagaccaactcaa |
12994445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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