View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11704_high_6 (Length: 502)
Name: NF11704_high_6
Description: NF11704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11704_high_6 |
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| [»] scaffold0036 (3 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 22536 - 22053
Alignment:
| Q |
1 |
tatttttacacttatggtgataaatcttacaccattggagatttgggtactgattccatcaactttggagaaaaagatgttacatttcctaaatcaattt |
100 |
Q |
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| T |
22536 |
tatttttacacttatggtgataaatcttacaccattggagatttgggtactgattccatcaactttggagaaaaagatgttacatttcctaaatcaattt |
22437 |
T |
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| Q |
101 |
ttggatgtggacatcgaaatgatgtcacatttaaaagaagccgaaaagctacgggtcttgttggtcttggagcaggaccactatcactagtttcacaact |
200 |
Q |
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| T |
22436 |
ttggatgtggacatcaaaatgatgtcacatttaaaagaagccgaaaagctacgggtcttgttggtcttggagcaggaccactatcactagtttcacaact |
22337 |
T |
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| Q |
201 |
aggtgactcaattggtcacaaattctcctattgtttggttccttcatttttaaactcaactagcaaaatgaaatttggagatcaagcaattataaaagat |
300 |
Q |
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| T |
22336 |
aggtgactcaattggtcacaaattctcctattgtttggttcctccaagtttaaactcaattagcaaaatgaaatttggagatgaagcaattataaaagat |
22237 |
T |
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| Q |
301 |
aatggcgttgtgtctactcccctcataatcaaatcttcaaatccttcttattacttcctcaatctagaaggcataaacataggacaaaaaactgatgaga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||| ||||| |
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| T |
22236 |
aatggcgttgtgtctactcccctcataatcaaatcttcaaatccttcttattacttcctcaatctcgaaggcatcaccatcggacaaaaaactgttgaga |
22137 |
T |
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| Q |
401 |
caggacgaatcgatggtaatataataattgattcaaggataacattaacatatcttctacaaaacttttacaatggtttggtag |
484 |
Q |
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| T |
22136 |
caggtcgaaccgatggtaacataatcattgattcagggacaacattgacgtatcttgaacaaaacttttacaatgatttggtag |
22053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 67 - 456
Target Start/End: Complemental strand, 14432 - 14043
Alignment:
| Q |
67 |
ggagaaaaagatgttacatttcctaaatcaatttttggatgtggacatcgaaatgatgtcacatttaaaagaagccgaaaagctacgggtcttgttggtc |
166 |
Q |
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| T |
14432 |
ggagaaaaagatgttacatttccaaaatcagtttttggatgtggacttcaaaatgatctagggtctgaaactagtcataaaaccacaggtattgttggtc |
14333 |
T |
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| Q |
167 |
ttggagcaggaccactatcactagtttcacaactaggtgactcaattggtcacaaattctcctattgtttggttccttcatttttaaactcaactagcaa |
266 |
Q |
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| T |
14332 |
taggactagggccattgtccctagtttcacaactaggcgattctattggtcgaaaattctcttattgtttggttcctttcggttcaaactcgactagcaa |
14233 |
T |
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| Q |
267 |
aatgaaatttggagatcaagcaattataaaagataatggcgttgtgtctactcccctcataatcaaatcttcaaatccttcttattacttcctcaatcta |
366 |
Q |
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| T |
14232 |
attgaaatttggagatcaagcaattataaaaggcaatggtgttgtgtctactccccttatgatcaagtcatctgatccttatcattactatctcaatctc |
14133 |
T |
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| Q |
367 |
gaaggcataaacataggacaaaaaactgatgagacaggacgaatcgatggtaatataataattgattcaaggataacattaacatatctt |
456 |
Q |
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| T |
14132 |
gaaggtatcaccgttggacaaaaaacggctcagtcaggtcaaactgatggtaatataatcattgattcaggtacaacattgacgtatctt |
14043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 157 - 336
Target Start/End: Original strand, 41298 - 41477
Alignment:
| Q |
157 |
cttgttggtcttggagcaggaccactatcactagtttcacaactaggtgactcaattggtcacaaattctcctattgtttggttccttcatttttaaact |
256 |
Q |
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| T |
41298 |
cttgttggtttaggagcaggaccattgtcactagtttcgcaactaggtcattctatcggtcgaaaattctcgtattgtttggttccttttggttcaaact |
41397 |
T |
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| Q |
257 |
caactagcaaaatgaaatttggagatcaagcaattataaaagataatggcgttgtgtctactcccctcataatcaaatct |
336 |
Q |
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| T |
41398 |
cgactagtaaattgacgtttgggaatcaatcaactataacgggtaatgaagttgtgtctactcccctcataatcaaatct |
41477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 157 - 336
Target Start/End: Complemental strand, 26464555 - 26464376
Alignment:
| Q |
157 |
cttgttggtcttggagcaggaccactatcactagtttcacaactaggtgactcaattggtcacaaattctcctattgtttggttccttcatttttaaact |
256 |
Q |
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||||||||||| |||||||||||| | ||||||||||||||||||||| | || || |||| |||||||| |||||||||||||||| || ||||| |
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| T |
26464555 |
cttgttggtctaggagcaggaccattttcactagtttcacaactaggtcattccatcggtcgaaaattctcttattgtttggttcctttcggttcaaact |
26464456 |
T |
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| Q |
257 |
caactagcaaaatgaaatttggagatcaagcaattataaaagataatggcgttgtgtctactcccctcataatcaaatct |
336 |
Q |
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| T |
26464455 |
caactagtaaactcaagtttgggaaccaatcaactataacgggtaacgaagttgtgtctactccactcataatcaaatct |
26464376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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