View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11704_high_8 (Length: 460)
Name: NF11704_high_8
Description: NF11704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11704_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 7842708 - 7842873
Alignment:
| Q |
1 |
aaataaaataaaattcaaagcgagcgtagacatattaagcttagcttgattcggccctaccaatttatgcaaatagaatgcaataaatctccttcaaaat |
100 |
Q |
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| T |
7842708 |
aaataaaataaaattcaaagcgagcgtagacatattaagcttagcttgattcggccctaccaatttatgcaaatagaatgcaataaatctccttcaaaat |
7842807 |
T |
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| Q |
101 |
acttcataatccttgaagtgtgttatagattaacttcaaatatatctatcaacgatattttacagg |
166 |
Q |
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| T |
7842808 |
gcttcataatccttgaagtgtgttatacattaacttcaaatatatctatcaacaatattttacagg |
7842873 |
T |
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Target: chr5; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 281 - 445
Target Start/End: Original strand, 7842983 - 7843151
Alignment:
| Q |
281 |
acctataagcctggtggtaatttttgtacccactcatggtagggtatggtgctcaaactcgagcagatttaaatattccgttcgttattttaacataaaa |
380 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7842983 |
acctataagcctggtggtaatttttgtacccactcattgtagggtatggtgctcaaactcgagcagatttaaatattccgttcgttattttaacataaaa |
7843082 |
T |
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| Q |
381 |
agttcaaaacaattaaac----cttgtattcaaacctacatctacacaaatcgcaacaactaaccaaac |
445 |
Q |
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| T |
7843083 |
agttcaaaacaattaaacctagcttgtattcaaacctacatctacacaaatcgcaacaactaaccaaac |
7843151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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