View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11704_low_13 (Length: 327)
Name: NF11704_low_13
Description: NF11704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11704_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 46834936 - 46834636
Alignment:
| Q |
18 |
catgtgaaaaagtgaaccaatattacccagtttctggtcctggtggtaaccaaagaatccccaatttgcaaaaacatattgataaatgtgatattaacat |
117 |
Q |
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| T |
46834936 |
catgtgaaaaagtgaaccaatattacccagtttctggtcctggtggtaaccaaagaatccccaatttgcaaaaacatattgataaatgtgatattaacat |
46834837 |
T |
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| Q |
118 |
taacacaaccacggatggagtcattctacctgtttgtgtatccaaattagaaccaacggttgtgctatctaattacactcattctgatatttatgcaaag |
217 |
Q |
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| T |
46834836 |
taacacaaccacggatggagtcattctacctgtttgtgtatccaaattagaaccaacggttgtgctatctaattacactcattctgatatttatgcaaag |
46834737 |
T |
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| Q |
218 |
tttctcaacaattctaagtacactggagttggacttggttctgaagatgattggatggttcttgttcttactaccaatacaactactggaactttctctg |
317 |
Q |
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| T |
46834736 |
tttctcaacaattctaagtacactggagttggacttggttctgaagatgattggatggttcttgttcttactaccaatacaactactggaactttctctg |
46834637 |
T |
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| Q |
318 |
c |
318 |
Q |
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| T |
46834636 |
c |
46834636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 280
Target Start/End: Original strand, 36836095 - 36836123
Alignment:
| Q |
252 |
ttggttctgaagatgattggatggttctt |
280 |
Q |
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| T |
36836095 |
ttggttctgaagatgattggatggttctt |
36836123 |
T |
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