View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11704_low_14 (Length: 306)
Name: NF11704_low_14
Description: NF11704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11704_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 34719729 - 34720002
Alignment:
| Q |
16 |
cacgagaagagagagatagtaaacatagtcattagaacgaaaatttaggtcctacaaatcagaaatcatgagatggaatctaccttgcctgtaaatttgt |
115 |
Q |
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| T |
34719729 |
cacgagaagagacagatagtaaacatagtcattacaacgaaaatttaggtcctacaaatcagaaatcatgagatggaatctaccttgcctgtaaatttgt |
34719828 |
T |
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| Q |
116 |
tagatttaaactatttggggtgagaacaatcctgttagtccaaccagtgaaaacacgactcaaggttctaagaacattgaaattcttgaaagcggtcgct |
215 |
Q |
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| T |
34719829 |
tagatttaaactatttggggtgagaacaatcatgttagtccaactagtgaaaacacgactcaaggttctaagaacattgaaattcttgaaagcggttgct |
34719928 |
T |
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| Q |
216 |
atcttcacagtc-taagtttgagatccacatgctggaatcgacatgttgatcaagatcactgtgccaatattct |
288 |
Q |
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| T |
34719929 |
atcttcacagtcttgagtttgagatccacatgctggaatcgacatgttgatcaagatcaccgtgccaatattct |
34720002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 169
Target Start/End: Original strand, 34729251 - 34729392
Alignment:
| Q |
28 |
gagatagtaaacatagtcattagaacgaaaatttaggtcctacaaatcagaaatcatgagatggaatctaccttgcctgtaaatttgttagatttaaact |
127 |
Q |
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| T |
34729251 |
gagataataaacatagtcattacaacaaaaatttaggtcctataaataagaaatcatgagatggaatctagcttgcctataaatttattaggttgaaact |
34729350 |
T |
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| Q |
128 |
atttggggtgagaacaatcctgttagtccaaccagtgaaaac |
169 |
Q |
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| T |
34729351 |
atttagagtaagaacattcatattaatccaaatagtgaaaac |
34729392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 34725200 - 34725272
Alignment:
| Q |
41 |
tagtcattagaacgaaaatttaggtcctacaaatcagaaatcatgagatggaatctaccttgcctgtaaatttg |
114 |
Q |
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| T |
34725200 |
tagttattacaacgaaaatttaggtcctacaaataagaaatcgtgagat-gaatcttcgttgcctgtaagtttg |
34725272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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