View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11704_low_16 (Length: 269)
Name: NF11704_low_16
Description: NF11704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11704_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 50 - 251
Target Start/End: Complemental strand, 41812524 - 41812323
Alignment:
| Q |
50 |
ctttgagtctttgagatgattcccttgagatagacattacactcgcggcgataatcaatcaacaaacagagctgcctgatggcctccctcttttcctctc |
149 |
Q |
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| T |
41812524 |
ctttgagtctttgagatgattcccttgagatagacattacactcgcggtgataatcaatcaacaaacagagctgcctgatggcctccctcttttcctctc |
41812425 |
T |
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| Q |
150 |
ccaaatccaacatgccttcctctttctcttttatcaacttctgtagctcttcaactgtcttcttaagttcatcaacagttgctgtcacattcatcttctc |
249 |
Q |
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| T |
41812424 |
ccaaatccaatattccttcctctttctcttttatcaacttctgtagctcttcaactgtcttcttaagttcatcaacagttgctgtcacattcatcttctc |
41812325 |
T |
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| Q |
250 |
tg |
251 |
Q |
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|| |
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| T |
41812324 |
tg |
41812323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 56 - 251
Target Start/End: Complemental strand, 41799302 - 41799107
Alignment:
| Q |
56 |
gtctttgagatgattcccttgagatagacattacactcgcggcgataatcaatcaacaaacagagctgcctgatggcctccctcttttcctctcccaaat |
155 |
Q |
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| T |
41799302 |
gtctttgatatgatttccttgagacggtcactactctcacggtgataatcaatccacaaacagagctgcctgatggcctccctcttttcctctcccaaat |
41799203 |
T |
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| Q |
156 |
ccaacatgccttcctctttctcttttatcaacttctgtagctcttcaactgtcttcttaagttcatcaacagttgctgtcacattcatcttctctg |
251 |
Q |
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| T |
41799202 |
ccaatatgccttcctctttctctttcatcgacttctctagctctccaactgtcttcttaagttcaacaacagttgctgtcacattcatcttctctg |
41799107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 54 - 251
Target Start/End: Complemental strand, 41805690 - 41805493
Alignment:
| Q |
54 |
gagtctttgagatgattcccttgagatagacattacactcgcggcgataatcaatcaacaaacagagctgcctgatggcctccctcttttcctctcccaa |
153 |
Q |
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|||||||||| |||| | |||| |||||| |||| | ||| | | ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41805690 |
gagtctttgatatgaattcctttagatagtcattgcgctccctgtgataatcaatccgcaaacaaagctgcctgatggcctccctcttttcctctcccaa |
41805591 |
T |
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| Q |
154 |
atccaacatgccttcctctttctcttttatcaacttctgtagctcttcaactgtcttcttaagttcatcaacagttgctgtcacattcatcttctctg |
251 |
Q |
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| T |
41805590 |
gttcaacataccctcctctttctcttccatcaacttctctagctcttcaactctcttcttaagttcaacaacaattgttgtcacattcatcttctctg |
41805493 |
T |
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