View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11704_low_17 (Length: 263)
Name: NF11704_low_17
Description: NF11704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11704_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 720841 - 720605
Alignment:
| Q |
18 |
agaagtctcgtccatctttccttagatttagttcctcctttaacatattgatatcgatgcaaatgcacggtttaacagtcataataaaatatcgatctta |
117 |
Q |
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| T |
720841 |
agaagtctcgtccatctttccttagatttagttcctcctttaacatattgatatcgatgcaaatgcacggtttaacagtcataataaaatatcgatctta |
720742 |
T |
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| Q |
118 |
aagatttgtgatcatcggaatcattggatttcattgttatgacgaacacaccaactcatattccttccttttgtcttgaaaatacatgactaaagatgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
720741 |
aagatttgtgatcatcggaatcattggatttcattgttatgacgaacacaccaactcatattccttccttttgtcttgaaaatacatgactaaagatgat |
720642 |
T |
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| Q |
218 |
gtattcttatttgtattgtttacttactctatctctg |
254 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
720641 |
gtattcttatttgtattgtttacttactctatctctg |
720605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 756082 - 756317
Alignment:
| Q |
18 |
agaagtctcgtccatctttccttagatttagttcctcctttaacatattgatatcgatgcaaatgcacggtttaacagtcataataaaatatcgatctta |
117 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
756082 |
agaagtctcgtccatctttccttagatttagtttctcctttaacatattgatatcgatgcaaatgcacggtttaacagtcataataaaatatcgatctta |
756181 |
T |
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| Q |
118 |
aagatttgtgatcatcggaatcattggatttcattgttatgacgaacacaccaactcatattccttccttttgtcttgaaaatacatgactaaagatgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
756182 |
aagatttgtgatcatcggaatcattggatttcattgttatgacgaacacaccaactcatattccttccttttgtcttgaaaatacatgactaaagatgat |
756281 |
T |
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| Q |
218 |
gtattcttatttgtattgtttacttactctatctct |
253 |
Q |
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| T |
756282 |
gtattcttatttgtattgtttacttactctatctct |
756317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 21453559 - 21453461
Alignment:
| Q |
134 |
ggaatcattggatttcattgttatgacgaacacaccaactcatattccttccttttgtcttgaaaatacatgactaaagatgatgtattcttatttgta |
232 |
Q |
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| T |
21453559 |
ggaataattggattttgttattatgaccaacaaaccaaatcatattcctttcatttgtctcggaaatgcatagctaaggatgatgtattctcatttgta |
21453461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 5841987 - 5842039
Alignment:
| Q |
136 |
aatcattggatttcattgttatgacgaacacaccaactcatattccttccttt |
188 |
Q |
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||||||||||||| || ||||||||||||||| | | |||||||||||||||| |
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| T |
5841987 |
aatcattggatttgatcgttatgacgaacacatccattcatattccttccttt |
5842039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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