View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11704_low_2 (Length: 771)
Name: NF11704_low_2
Description: NF11704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11704_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 143 - 729
Target Start/End: Original strand, 27328409 - 27328994
Alignment:
| Q |
143 |
taaacctaaaacctcacattcacaacactttcttgcttgatcgtcggtttgtaaatacaatacatcgtcttgttgagatgctgctcattgtccaccaccc |
242 |
Q |
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| T |
27328409 |
taaagctaaaacctcacattcacaacactttcttgcttgatcgtcggtttgtaaatacaatacatcgtcttgttgagatgctgctcattgtccaccaccc |
27328508 |
T |
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| Q |
243 |
agtaatccttcaaacttaagatcttaggtcagtaaggatctgttatcactcgtgtgtcagaccactcctaaaatttctagcttcgtaataattatggttg |
342 |
Q |
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| T |
27328509 |
agtaatccttcaaacttaagatcttaggtctggaaggatcagttatcactcgtgtgtccaaccactcctaaaatttctagcttcgtaataattatggttg |
27328608 |
T |
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| Q |
343 |
gttgcataggacgtgataattgcttttatatcaaacaactaacacataccaggcataacctagtttaagtagaacatgaatttggtgttgtaccnnnnnn |
442 |
Q |
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| T |
27328609 |
gttgcataggacgtgataattgcttttatatcaaacaactagcacataccaggcataacctagtttaagtagaacatgaatttggtgttgtaccaaaaaa |
27328708 |
T |
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| Q |
443 |
nttaaaagaacatgaatttggtggtttgatattgagggaccacctgctaaaacgcaggtgacataaaagcttgatccgatccaacatacttacatgcaaa |
542 |
Q |
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| T |
27328709 |
aa-aaaagaacatgaatttggtggtttgatattgagggaccacctgctaaaacgcaggtgacataaaagcttgatccgatccaacatacttacatgcaaa |
27328807 |
T |
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| Q |
543 |
attaggtcgtaaacaaataaatctcctggcctgtgtgacgtttcatcagctgtcacctgttctactatgacaccatcacattatttgcatgccactaaaa |
642 |
Q |
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| T |
27328808 |
attaggtcgtaaacaaataaatctcctggcctgtgtgacgtttcatcagctgtcacctgttctactatgacaccatcacattatttgcatgccactaaaa |
27328907 |
T |
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| Q |
643 |
tagcaccacaaattcatttggagtttgttgctctaagaaaaaataaatgtattaaattaaagttagctcttgagcatattagtttga |
729 |
Q |
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| T |
27328908 |
tagcaccgcaaattcatttggagttggttgctctaagaaaaaataaatgtattatattaaagttagctcttgagcatattagtttga |
27328994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 27328307 - 27328414
Alignment:
| Q |
1 |
actcgaacatgatcgttgatcatattatcaagattgtttgcagctgtccattcagacagctgt-----ccaggattttggatcctaaaacattaattctt |
95 |
Q |
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| T |
27328307 |
actcgaacatgatcgttgatcatattatcaagattgtttgcagctgtc----cgaacagctgtctaagctaggattttggatcctaaaacattaattcct |
27328402 |
T |
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| Q |
96 |
ccactataaagc |
107 |
Q |
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| T |
27328403 |
ccactataaagc |
27328414 |
T |
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