View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11704_low_3 (Length: 713)

Name: NF11704_low_3
Description: NF11704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11704_low_3
NF11704_low_3
[»] chr4 (36 HSPs)
chr4 (1-696)||(50669345-50670039)
chr4 (241-589)||(37826336-37826681)
chr4 (252-377)||(48871142-48871267)
chr4 (252-377)||(48876446-48876571)
chr4 (252-377)||(48886828-48886953)
chr4 (28-136)||(37826022-37826130)
chr4 (50-140)||(7787556-7787646)
chr4 (243-371)||(7237095-7237222)
chr4 (30-122)||(7772848-7772942)
chr4 (246-387)||(50666878-50667020)
chr4 (254-319)||(48899380-48899445)
chr4 (461-595)||(48147279-48147410)
chr4 (267-370)||(7787083-7787186)
chr4 (39-142)||(7790965-7791068)
chr4 (28-140)||(50249781-50249895)
chr4 (245-316)||(50673453-50673524)
chr4 (39-140)||(7766526-7766627)
chr4 (550-659)||(48903255-48903364)
chr4 (622-662)||(45384625-45384665)
chr4 (32-71)||(48853652-48853691)
chr4 (253-311)||(49038238-49038296)
chr4 (99-140)||(7793663-7793704)
chr4 (99-140)||(7816824-7816865)
chr4 (621-662)||(45365946-45365987)
chr4 (625-657)||(7878045-7878077)
chr4 (461-512)||(48155989-48156040)
chr4 (445-512)||(48853131-48853198)
chr4 (39-103)||(7801485-7801546)
chr4 (298-408)||(45384290-45384400)
chr4 (625-659)||(48870857-48870891)
chr4 (625-659)||(48876161-48876195)
chr4 (625-659)||(48886543-48886577)
chr4 (298-379)||(45365620-45365701)
chr4 (28-61)||(45371016-45371049)
chr4 (266-319)||(49047923-49047976)
chr4 (621-654)||(50672800-50672833)
[»] chr5 (4 HSPs)
chr5 (243-379)||(9120343-9120482)
chr5 (439-660)||(42561874-42562092)
chr5 (241-329)||(29696869-29696957)
chr5 (266-319)||(29711807-29711860)
[»] chr8 (13 HSPs)
chr8 (241-379)||(4961864-4962002)
chr8 (435-512)||(12200789-12200866)
chr8 (435-512)||(12445217-12445294)
chr8 (241-385)||(15349463-15349606)
chr8 (625-657)||(4962249-4962281)
chr8 (253-388)||(4030143-4030278)
chr8 (445-512)||(4030332-4030399)
chr8 (241-308)||(12200970-12201036)
chr8 (241-308)||(12445398-12445464)
chr8 (620-657)||(12195623-12195660)
chr8 (620-657)||(12200641-12200678)
chr8 (620-657)||(12440051-12440088)
chr8 (620-657)||(12445069-12445106)
[»] chr6 (2 HSPs)
chr6 (240-370)||(21978987-21979115)
chr6 (241-378)||(21016402-21016538)
[»] chr2 (1 HSPs)
chr2 (253-387)||(29350994-29351128)
[»] chr3 (4 HSPs)
chr3 (241-374)||(11023849-11023982)
chr3 (543-662)||(11024148-11024264)
chr3 (625-661)||(47451630-47451666)
chr3 (610-663)||(11015200-11015253)
[»] chr1 (1 HSPs)
chr1 (69-138)||(24381953-24382022)


Alignment Details
Target: chr4 (Bit Score: 668; Significance: 0; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 1 - 696
Target Start/End: Complemental strand, 50670039 - 50669345
Alignment:
Q  1 cagagaaatgacaaagaccactgttaaagagtccactaaaattagagaacaaaaccttctttttccttcaacatgcataaattaaccagattagtttacc 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50670039 cagagaaatgacaaagaccactgttaa-gagtccactaaaattagagaacaaaaccttctttttccttcaacatgcataaattaaccagattagtttacc 50669941  T
Q  101 atataaaacaatttcaagcagtcacaacaacatacatttaaacatttcacaacatattggatcagcttgtgtggcatactagcttatgttacaaaaagct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  50669940 atataaaacaatttcaagcagtcacaacaacatacatttaaacatttcacaacatattggatcagcttgtgtggcatactagcttatgttacaaaaagca 50669841  T
Q  201 gttaaaaaacatattaccttaaaatgcaggagagataaagatacaatataattataaatataaataaaatggtgaaggagaatatttcaaaaccttgttc 300  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50669840 gttaaaaaacatattaccctaaaatgcaggagagataaaaatacaatataattataaatataaataaaatggtgaaggagaatatttcaaaaccttgttc 50669741  T
Q  301 ttcttgtttgtgtcatctttttgaacttgttcatggtcagcggggagtgaaagtagagaccctgtatacatagccactttggatccaactgaattgttat 400  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  50669740 ttcttgtttgtgtcatctttttgaacttgttcatggacagcggggagtgaaagtagagactctgtatacatagccactttggatccaactgaattgttat 50669641  T
Q  401 agtaggagtggtagtctaagagttgtactttatcattattatatttcaccaatccagaaccaccatctgttccaataatgtcaccattctttgtagagca 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50669640 agtaggagtggtagtctaagagttgtactttatcattattatatttcaccaatccagaaccaccatctgttccaataatgtcaccattctttgtagagca 50669541  T
Q  501 tataggggaaaatttaggaatgactgcatcaatctgtagaataagagtcttagtccaagatgaatgcaacttggaatctttcatcacccacatttgaaat 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50669540 tataggggaaaatttaggaatgactgcatcaatctgtagaataagagtcttagtccaagatgaatgcaacttggaatctttcatcacccacatttgaaat 50669441  T
Q  601 ttgttatggtcctccaaagtccaaagactgagaaattctccaaatacccacaaaccacaatctgaagtttgatggataaaatcatccggaagagta 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50669440 ttgttatggtcctccaaagtccaaagactgagaaattctccaaatacccacaaaccacaatctgaagtttgatggataaaatcatccggaagagta 50669345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 241 - 589
Target Start/End: Original strand, 37826336 - 37826681
Alignment:
Q  241 atacaatataattataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcatctttttgaacttgttcatggtcag 340  Q
    |||||||||||||  |||||| || ||||||||||||||||||||||  ||||||  |||||||||||||| ||||||| || |||||| ||   ||||     
T  37826336 atacaatataattgaaaatatcaagaaaatggtgaaggagaatattttgaaacctcattcttcttgtttgtatcatcttcttaaacttgctctccgtcaa 37826435  T
Q  341 cggggagtgaaagtagagaccctgtatacatagccactttggatccaactgaattgttatagtaggagtggtagtctaagagttgtactttatcattatt 440  Q
    | |||| |||||| |||||| | ||||||||   | ||| ||| | || || || ||||| |||||||   || |||||||||||| ||||||||||||     
T  37826436 cagggaatgaaagcagagactccgtatacatgatcgcttgggacctaagtggatagttatggtaggaggaatactctaagagttgtcctttatcattat- 37826534  T
Q  441 atatttcaccaatccagaaccaccatctgttccaataatgtcaccattctttgtagagcatataggggaaaatttaggaatgactgcatcaatctgtaga 540  Q
      | ||||||||||||  |||||| |||| ||||||||| |||||| | |||||||| |||| |||| |||| || |||||| |  |||||||| | | |    
T  37826535 --acttcaccaatccaagaccaccgtctgatccaataatatcaccactttttgtagaacatagagggtaaaaattgggaatggcatcatcaatccgaaca 37826632  T
Q  541 ataagagtcttagtccaagatgaatgcaacttggaatctttcatcaccc 589  Q
    | |||||||||||||||||| |||||||  ||| | |||||||||||||    
T  37826633 acaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 37826681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 252 - 377
Target Start/End: Complemental strand, 48871267 - 48871142
Alignment:
Q  252 ttataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcatctttttgaacttgttcatggtcagcggggagtgaa 351  Q
    |||||||||| || ||||||||||||||||||| ||||||||||  |||||||||||||||||| ||| || ||| || |||| |||| | |||||||||    
T  48871267 ttataaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaa 48871168  T
Q  352 agtagagaccctgtatacatagccac 377  Q
    || | |||| ||||||| ||||||||    
T  48871167 agcaaagactctgtatagatagccac 48871142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 252 - 377
Target Start/End: Complemental strand, 48876571 - 48876446
Alignment:
Q  252 ttataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcatctttttgaacttgttcatggtcagcggggagtgaa 351  Q
    |||||||||| || ||||||||||||||||||| ||||||||||  |||||||||||||||||| ||| || ||| || |||| |||| | |||||||||    
T  48876571 ttataaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaa 48876472  T
Q  352 agtagagaccctgtatacatagccac 377  Q
    || | |||| ||||||| ||||||||    
T  48876471 agcaaagactctgtatagatagccac 48876446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 252 - 377
Target Start/End: Complemental strand, 48886953 - 48886828
Alignment:
Q  252 ttataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcatctttttgaacttgttcatggtcagcggggagtgaa 351  Q
    |||||||||| || ||||||||||||||||||| ||||||||||  |||||||||||||||||| ||| || ||| || |||| |||| | |||||||||    
T  48886953 ttataaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaa 48886854  T
Q  352 agtagagaccctgtatacatagccac 377  Q
    || | |||| ||||||| ||||||||    
T  48886853 agcaaagactctgtatagatagccac 48886828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 37826022 - 37826130
Alignment:
Q  28 agagtccactaaaattagagaacaaaaccttctttttccttcaacatgcataaattaaccagattagtttaccatataaaacaatttcaagcagtcacaa 127  Q
    |||||||||| |||||||||||||||||||| |||||||||||| ||||||||  | | || |||| ||||||||||||||| ||||||  |||| ||||    
T  37826022 agagtccactgaaattagagaacaaaaccttatttttccttcaatatgcataacctcatcaaattaatttaccatataaaaccatttcagacagtgacaa 37826121  T
Q  128 caacataca 136  Q
     ||||||||    
T  37826122 aaacataca 37826130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 7787646 - 7787556
Alignment:
Q  50 caaaaccttctttttccttcaacatgcataaattaaccagattagtttaccatataaaacaatttcaagcagtcacaacaacatacattta 140  Q
    |||||||||||| |||||||||| ||||| || | | ||||||| |||||||||| |||||||| |||| ||| |||||||||||||||||    
T  7787646 caaaaccttcttcttccttcaacgtgcattaactcatcagattaatttaccatatgaaacaattacaagtagtgacaacaacatacattta 7787556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 243 - 371
Target Start/End: Original strand, 7237095 - 7237222
Alignment:
Q  243 acaatataattataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcatctttttgaacttgttcatggtcagcg 342  Q
    |||||||||||||||||||||| ||||   ||||||||||||||||| ||| |  || ||||||||||||||||| |||| | | || |||| |||| |     
T  7237095 acaatataattataaatataaagaaaacaatgaaggagaatatttcacaacatcattgttcttgtttgtgtcatc-ttttaagcatgctcattgtcacca 7237193  T
Q  343 gggagtgaaagtagagaccctgtatacat 371  Q
     |||||||||| |||||| ||||||||||    
T  7237194 aggagtgaaagcagagactctgtatacat 7237222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 7772848 - 7772942
Alignment:
Q  30 agtccactaaaattagagaacaaaacct--tctttttccttcaacatgcataaattaaccagattagtttaccatataaaacaatttcaagcagt 122  Q
    |||||||| | ||||||||||||||  |  | |||||||||||||||| ||||| | | ||||||| ||||||||||||||||||||||||||||    
T  7772848 agtccactgatattagagaacaaaaatttatttttttccttcaacatgtataaactcatcagattaatttaccatataaaacaatttcaagcagt 7772942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 246 - 387
Target Start/End: Complemental strand, 50667020 - 50666878
Alignment:
Q  246 atataattataaatataaataaaatggtgaaggagaatatttcaaaacct-tgttcttcttgtttgtgtcatctttttgaacttgttcatggtcagcggg 344  Q
    ||||||||| |||||| |||||||| |||||||||||||||||| |||||   |||||||||||| ||| || || || |||||| |||    | || ||    
T  50667020 atataattaaaaatatcaataaaatagtgaaggagaatatttcacaacctgcattcttcttgtttatgtgattttcttaaacttgctcagcccccgcagg 50666921  T
Q  345 gagtgaaagtagagaccctgtatacatagccactttggatcca 387  Q
     ||||||||||||||| ||||||||||  |||||| |||||||    
T  50666920 aagtgaaagtagagactctgtatacatgaccacttgggatcca 50666878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 48899445 - 48899380
Alignment:
Q  254 ataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcatctt 319  Q
    |||||||| || |||||||| |||||||||||||||||||||  |||||||||||| |||||||||    
T  48899445 ataaatatcaagaaaatggtaaaggagaatatttcaaaacctccttcttcttgtttatgtcatctt 48899380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 461 - 595
Target Start/End: Original strand, 48147279 - 48147410
Alignment:
Q  461 caccatctgttccaataatgtcaccattctttgtagagcatataggggaaaatttaggaatgactgcatcaatctgtagaataagagtcttagtccaaga 560  Q
    |||||| ||||||||||||||||||| | ||||| ||||||||||||||||| |  ||||||    |||||||    | | |||||||||||||||||||    
T  48147279 caccatttgttccaataatgtcaccactttttgtggagcatataggggaaaagtagggaatg---ccatcaatagacaaattaagagtcttagtccaaga 48147375  T
Q  561 tgaatgcaacttggaatctttcatcacccacattt 595  Q
     |||||||  ||| | |||||||||||||| ||||    
T  48147376 cgaatgcactttgtattctttcatcacccatattt 48147410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 267 - 370
Target Start/End: Complemental strand, 7787186 - 7787083
Alignment:
Q  267 aaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcatctttttgaacttgttcatggtcagcggggagtgaaagtagagaccctgta 366  Q
    ||||||| || |||| ||||||| |||||  || ||||||| ||||||||||| || ||| || |||| |||| ||| |||||||||||||||| |||||    
T  7787186 aaatggtaaatgagagtatttcacaacctcattgttcttgtctgtgtcatcttcttaaacatgctcatcgtcaccggagagtgaaagtagagactctgta 7787087  T
Q  367 taca 370  Q
    ||||    
T  7787086 taca 7787083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 7791068 - 7790965
Alignment:
Q  39 aaattagagaacaaaaccttctttttccttcaacatgcataaattaaccagattagtttaccatataaaacaatttcaagcagtcacaacaacatacatt 138  Q
    ||||||||||||||||  || ||||||||||||| ||| |||| | | | |||||  |||||||||||| |||||||||||| | ||| || ||||||||    
T  7791068 aaattagagaacaaaaaattgtttttccttcaacttgcctaaacttatcggattaacttaccatataaatcaatttcaagcaatgacatcagcatacatt 7790969  T
Q  139 taaa 142  Q
    ||||    
T  7790968 taaa 7790965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 50249781 - 50249895
Alignment:
Q  28 agagtccactaaaattagagaacaaaaccttctttttccttcaacatgcataaattaaccaga-----ttagtttaccatataaaacaatttcaagcagt 122  Q
    |||||||||| |||||||||||||||||   ||||||||||||| ||||||||| | | ||||     ||| |||| |||||||||||||||||  ||||    
T  50249781 agagtccactgaaattagagaacaaaac---ctttttccttcaatatgcataaactcatcagattaatttattttatcatataaaacaatttcagacagt 50249877  T
Q  123 cacaacaacatacattta 140  Q
     ||||||||||| |||||    
T  50249878 gacaacaacatatattta 50249895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 50673524 - 50673453
Alignment:
Q  245 aatataattataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcat 316  Q
    ||||||||||||||||| || |||||||||||||| ||||||| |||||||  |||||| |||||| |||||    
T  50673524 aatataattataaatatcaagaaaatggtgaaggaaaatattttaaaacctcattcttcatgtttgagtcat 50673453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 7766627 - 7766526
Alignment:
Q  39 aaattagagaacaaaaccttctttttccttcaacatgcataaattaaccagattagtttaccatataaaacaatttcaagcagtcacaacaacatacatt 138  Q
    |||||| ||| ||||||||| | | |||||||||||||||||| | |  |||||| ||||||| || ||||||||||||| ||| |||| |||||| |||    
T  7766627 aaattaaagagcaaaaccttatatatccttcaacatgcataaactcaaaagattaatttaccacatgaaacaatttcaagtagtgacaataacataaatt 7766528  T
Q  139 ta 140  Q
    ||    
T  7766527 ta 7766526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 550 - 659
Target Start/End: Complemental strand, 48903364 - 48903255
Alignment:
Q  550 ttagtccaagatgaatgcaacttggaatctttcatcacccacatttgaaatttgttatggtcctccaaagtccaaagactgagaaattctccaaataccc 649  Q
    |||||||||||  ||||||  ||| | |||||||||||||| |||| |||||| |||| ||  ||||||| ||| || || |||||||||||||||||||    
T  48903364 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatcgtaatccaaagcccataggctaagaaattctccaaataccc 48903265  T
Q  650 acaaaccaca 659  Q
    | ||| ||||    
T  48903264 ataaatcaca 48903255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 622 - 662
Target Start/End: Original strand, 45384625 - 45384665
Alignment:
Q  622 caaagactgagaaattctccaaatacccacaaaccacaatc 662  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  45384625 caaaaactgagaaattctccaaatacccacaaaccacaatc 45384665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 48853691 - 48853652
Alignment:
Q  32 tccactaaaattagagaacaaaaccttctttttccttcaa 71  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  48853691 tccactaaaattagagaacaaaaccttctttctccttcaa 48853652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 49038238 - 49038296
Alignment:
Q  253 tataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgt 311  Q
    ||||||||| || ||||||||||||  |||||||||| ||||| |||||||||||||||    
T  49038238 tataaatatcaagaaaatggtgaagaggaatatttcataacctcgttcttcttgtttgt 49038296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 7793663 - 7793704
Alignment:
Q  99 ccatataaaacaatttcaagcagtcacaacaacatacattta 140  Q
    |||||||||||||||||||||||| |||||||||| ||||||    
T  7793663 ccatataaaacaatttcaagcagtgacaacaacatgcattta 7793704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 7816824 - 7816865
Alignment:
Q  99 ccatataaaacaatttcaagcagtcacaacaacatacattta 140  Q
    |||||||||||||||||||||||| |||||||||| ||||||    
T  7816824 ccatataaaacaatttcaagcagtgacaacaacatgcattta 7816865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 621 - 662
Target Start/End: Original strand, 45365946 - 45365987
Alignment:
Q  621 ccaaagactgagaaattctccaaatacccacaaaccacaatc 662  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  45365946 ccaaaaactgaaaaattctccaaatacccacaaaccacaatc 45365987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 625 - 657
Target Start/End: Complemental strand, 7878077 - 7878045
Alignment:
Q  625 agactgagaaattctccaaatacccacaaacca 657  Q
    |||||||||||||||||||||||||||||||||    
T  7878077 agactgagaaattctccaaatacccacaaacca 7878045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 461 - 512
Target Start/End: Original strand, 48155989 - 48156040
Alignment:
Q  461 caccatctgttccaataatgtcaccattctttgtagagcatataggggaaaa 512  Q
    |||| |||||||||| |||||||||||| |||||||||||||| ||| ||||    
T  48155989 caccgtctgttccaacaatgtcaccattttttgtagagcatattgggtaaaa 48156040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 445 - 512
Target Start/End: Complemental strand, 48853198 - 48853131
Alignment:
Q  445 ttcaccaatccagaaccaccatctgttccaataatgtcaccattctttgtagagcatataggggaaaa 512  Q
    ||||||||||||  | ||||||| ||||||||||| |||||| |||||||| | ||||| ||||||||    
T  48853198 ttcaccaatccactatcaccatccgttccaataatatcaccactctttgtacaacatattggggaaaa 48853131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 7801546 - 7801485
Alignment:
Q  39 aaattagagaacaaaaccttctttttccttcaacatgcataaattaaccagattagtttaccata 103  Q
    ||||||||||||||||||||   | |||||||||||||||||| |||  |||||| |||||||||    
T  7801546 aaattagagaacaaaacctt---tctccttcaacatgcataaactaattagattattttaccata 7801485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 298 - 408
Target Start/End: Original strand, 45384290 - 45384400
Alignment:
Q  298 ttcttcttgtttgtgtcatctttttgaacttgttcatggtcagcggggagtgaaagtagagaccctgtatacatagccactttggatccaactgaattgt 397  Q
    |||||||||||||||||||||| || | |||| |||| |||| | |  |||||||| |||||| |||||||||  |||||||  ||||||| || ||       
T  45384290 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccagaaagtgaaaggagagactctgtatacacggccacttgagatccaagtggatctc 45384389  T
Q  398 tatagtaggag 408  Q
    |||||||||||    
T  45384390 tatagtaggag 45384400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 625 - 659
Target Start/End: Complemental strand, 48870891 - 48870857
Alignment:
Q  625 agactgagaaattctccaaatacccacaaaccaca 659  Q
    |||||||||||||| ||||||||||||||||||||    
T  48870891 agactgagaaattccccaaatacccacaaaccaca 48870857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 625 - 659
Target Start/End: Complemental strand, 48876195 - 48876161
Alignment:
Q  625 agactgagaaattctccaaatacccacaaaccaca 659  Q
    |||||||||||||| ||||||||||||||||||||    
T  48876195 agactgagaaattccccaaatacccacaaaccaca 48876161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 625 - 659
Target Start/End: Complemental strand, 48886577 - 48886543
Alignment:
Q  625 agactgagaaattctccaaatacccacaaaccaca 659  Q
    |||||||||||||| ||||||||||||||||||||    
T  48886577 agactgagaaattccccaaatacccacaaaccaca 48886543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 45365620 - 45365701
Alignment:
Q  298 ttcttcttgtttgtgtcatctttttgaacttgttcatggtcagcggggagtgaaagtagagaccctgtatacatagccactt 379  Q
    |||||||||||||||||||||| || | |||| |||| |||| | || ||||| || | |||| |||||||||| |||||||    
T  45365620 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcaaagactctgtatacatggccactt 45365701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 45371016 - 45371049
Alignment:
Q  28 agagtccactaaaattagagaacaaaaccttctt 61  Q
    ||||||||||||| ||||||||||||||||||||    
T  45371016 agagtccactaaatttagagaacaaaaccttctt 45371049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 49047923 - 49047976
Alignment:
Q  266 aaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcatctt 319  Q
    |||||||| |||||||||||| || || || ||||||||||||| |||||||||    
T  49047923 aaaatggtaaaggagaatattccataaactcgttcttcttgtttatgtcatctt 49047976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 654
Target Start/End: Complemental strand, 50672833 - 50672800
Alignment:
Q  621 ccaaagactgagaaattctccaaatacccacaaa 654  Q
    ||||| ||||||||||||||||||||||||||||    
T  50672833 ccaaaaactgagaaattctccaaatacccacaaa 50672800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 243 - 379
Target Start/End: Complemental strand, 9120482 - 9120343
Alignment:
Q  243 acaatataattataaatataaataaaatggtgaaggagaatatttcaaaacc---ttgttcttcttgtttgtgtcatctttttgaacttgttcatggtca 339  Q
    ||||||||| |||||| || || |||||||||||||||||||||||||||||   || |||||||||||||||||||||  || | ||||||||| ||||    
T  9120482 acaatataactataaaaatcaagaaaatggtgaaggagaatatttcaaaacctcattcttcttcttgtttgtgtcatctccttaagcttgttcattgtca 9120383  T
Q  340 gcggggagtgaaagtagagaccctgtatacatagccactt 379  Q
     | ||||||||||| |||||| ||||||| | ||||||||    
T  9120382 ccagggagtgaaagcagagactctgtataaagagccactt 9120343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 439 - 660
Target Start/End: Original strand, 42561874 - 42562092
Alignment:
Q  439 ttatatttcaccaatccagaaccaccatctgttccaataatgtcaccattctttgtagagcatataggggaaaatttaggaatgactgcatcaatctgta 538  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||| |||||| || ||| |||| |||| |  |||||| |  ||| |||  | |    
T  42561874 ttatatttcaccaatccggtaccaccatctgttccaataatatcaccattttttgtataggataaagggcaaaagtagggaatgtcatcataaataggaa 42561973  T
Q  539 gaataagagtcttagtccaagatgaatgcaacttggaatctttcatcacccacatttgaaatttgttatggtcctccaaagtccaaagactgagaaattc 638  Q
    ||| |||| |||||||||||||||||||||  ||| | |||||||||||||| || | ||     |||| ||||  |||| |||| |||||||||||| |    
T  42561974 gaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa---cattatcgtccctcaaaatccatagactgagaaatcc 42562070  T
Q  639 tccaaatacccacaaaccacaa 660  Q
    || ||||||||| |||||||||    
T  42562071 tctaaatacccaaaaaccacaa 42562092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 241 - 329
Target Start/End: Complemental strand, 29696957 - 29696869
Alignment:
Q  241 atacaatataattataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcatctttttgaacttg 329  Q
    |||||||||||||||||| || |  |||||||||||| |||||| ||||||||||  ||||||||| || ||||||||| || ||||||    
T  29696957 atacaatataattataaagatcatgaaaatggtgaagaagaatacttcaaaacctcattcttcttggttctgtcatcttcttaaacttg 29696869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 29711807 - 29711860
Alignment:
Q  266 aaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcatctt 319  Q
    ||||||||||||||||||| ||||| |||| ||||||||| || || |||||||    
T  29711807 aaaatggtgaaggagaatacttcaagacctcgttcttcttattcgtttcatctt 29711860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 241 - 379
Target Start/End: Original strand, 4961864 - 4962002
Alignment:
Q  241 atacaatataattataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcatctttttgaacttgttcatggtcag 340  Q
    |||||| |||| ||||||||| || ||||||||||| ||||||||||||||||||  |||||||| ||| |||||||||  | |||||| ||  |||||     
T  4961864 atacaacataactataaatatcaagaaaatggtgaatgagaatatttcaaaacctgattcttcttatttatgtcatcttcataaacttgctcgaggtcaa 4961963  T
Q  341 cggggagtgaaagtagagaccctgtatacatagccactt 379  Q
    |  || ||||||| | |||| |||||||||| |||||||    
T  4961964 catggggtgaaagcaaagactctgtatacatggccactt 4962002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 435 - 512
Target Start/End: Complemental strand, 12200866 - 12200789
Alignment:
Q  435 attattatatttcaccaatccagaaccaccatctgttccaataatgtcaccattctttgtagagcatataggggaaaa 512  Q
    ||||||||| ||||||||||||  ||||| ||| ||||||||||| |||||| | ||||||||| |||||||||||||    
T  12200866 attattatacttcaccaatccatgaccactatcagttccaataatatcaccactttttgtagagtatataggggaaaa 12200789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 435 - 512
Target Start/End: Complemental strand, 12445294 - 12445217
Alignment:
Q  435 attattatatttcaccaatccagaaccaccatctgttccaataatgtcaccattctttgtagagcatataggggaaaa 512  Q
    ||||||||| ||||||||||||  ||||| ||| ||||||||||| |||||| | ||||||||| |||||||||||||    
T  12445294 attattatacttcaccaatccatgaccactatcagttccaataatatcaccactttttgtagagtatataggggaaaa 12445217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 385
Target Start/End: Complemental strand, 15349606 - 15349463
Alignment:
Q  241 atacaatataatt--ataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcatctttttgaacttgttcatggtc 338  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||  | |||||||  |||||   ||||| ||| || | || | | || ||||  ||    
T  15349606 atacaatataattttataaatatcaataaaatggtgaaggagaataactgaaaacctcattctt---gtttgcgtcgtcctcttaagcctgctcattatc 15349510  T
Q  339 agcggggagtgaaagtagagaccctgtatacatagccactttggatc 385  Q
    | | ||||||||||| |||||| |||||||||||||||||| |||||    
T  15349509 accagggagtgaaagcagagactctgtatacatagccacttgggatc 15349463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 625 - 657
Target Start/End: Original strand, 4962249 - 4962281
Alignment:
Q  625 agactgagaaattctccaaatacccacaaacca 657  Q
    |||||||||||||||||||||||||||||||||    
T  4962249 agactgagaaattctccaaatacccacaaacca 4962281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 388
Target Start/End: Original strand, 4030143 - 4030278
Alignment:
Q  253 tataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcatctttttgaacttgttcatggtcagcggggagtgaaa 352  Q
    ||||| ||| || ||||| ||||| || |||| ||||||| ||  ||||||||||||| |||||||| || | |||| |||| || | | ||||||||||    
T  4030143 tataattatcaagaaaatagtgaaagataatacttcaaaaactcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaa 4030242  T
Q  353 gtagagaccctgtatacatagccactttggatccaa 388  Q
    | |||||| |||| ||||| | |||||  |||||||    
T  4030243 gcagagactctgtgtacatggtcacttgagatccaa 4030278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 445 - 512
Target Start/End: Original strand, 4030332 - 4030399
Alignment:
Q  445 ttcaccaatccagaaccaccatctgttccaataatgtcaccattctttgtagagcatataggggaaaa 512  Q
    ||||||||| ||| |||||||| |||||||||||| |||||| |  |||||||||| || ||||||||    
T  4030332 ttcaccaattcagtaccaccatatgttccaataatatcaccacttattgtagagcacattggggaaaa 4030399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 12201036 - 12200970
Alignment:
Q  241 atacaatataattataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtt 308  Q
    |||||| |||| |||||||||||| |||||| |||| ||||||||||||||||||  ||| |||||||    
T  12201036 atacaacataactataaatataaa-aaaatgatgaaagagaatatttcaaaacctcattcatcttgtt 12200970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 12445464 - 12445398
Alignment:
Q  241 atacaatataattataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtt 308  Q
    |||||| |||| |||||||||||| |||||| |||| ||||||||||||||||||  ||| |||||||    
T  12445464 atacaacataactataaatataaa-aaaatgatgaaagagaatatttcaaaacctcattcatcttgtt 12445398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 657
Target Start/End: Complemental strand, 12195660 - 12195623
Alignment:
Q  620 tccaaagactgagaaattctccaaatacccacaaacca 657  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  12195660 tccatagactgagaaattttccaaatacccacaaacca 12195623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 657
Target Start/End: Complemental strand, 12200678 - 12200641
Alignment:
Q  620 tccaaagactgagaaattctccaaatacccacaaacca 657  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  12200678 tccatagactaagaaattctccaaatacccacaaacca 12200641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 657
Target Start/End: Complemental strand, 12440088 - 12440051
Alignment:
Q  620 tccaaagactgagaaattctccaaatacccacaaacca 657  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  12440088 tccatagactgagaaattttccaaatacccacaaacca 12440051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 657
Target Start/End: Complemental strand, 12445106 - 12445069
Alignment:
Q  620 tccaaagactgagaaattctccaaatacccacaaacca 657  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  12445106 tccatagactaagaaattctccaaatacccacaaacca 12445069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 240 - 370
Target Start/End: Original strand, 21978987 - 21979115
Alignment:
Q  240 gatacaatataattataaatataaataaaatggtgaagga-gaatatttcaaaaccttgttcttcttgtttgtgtcatctttttgaacttgttcatggtc 338  Q
    |||| ||||| || |||||||| || |||||||||||||| ||||||||||||||||  ||||||   ||| |||||||||    |||||  |||| |||    
T  21978987 gataaaatattataataaatattaagaaaatggtgaaggaagaatatttcaaaacctcattcttccattttatgtcatctta---aacttcatcattgtc 21979083  T
Q  339 agcggggagtgaaagtagagaccctgtataca 370  Q
    | |||||||||||||||||||| |||||||||    
T  21979084 accggggagtgaaagtagagactctgtataca 21979115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 378
Target Start/End: Complemental strand, 21016538 - 21016402
Alignment:
Q  241 atacaatataattataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcatctttttgaacttgttcatggtcag 340  Q
    ||||||| |||||||||||||||| |||||||| || || ||||||||  |||  | || || |||||||||||||||| || | |||| || | ||||     
T  21016538 atacaatttaattataaatataaagaaaatggt-aatgataatatttcctaactcttttttttttgtttgtgtcatcttcttaatcttggtcgttgtcat 21016440  T
Q  341 cggggagtgaaagtagagaccctgtatacatagccact 378  Q
    | ||||||||||| | |||| ||||||||| |||||||    
T  21016439 cagggagtgaaagcaaagactctgtatacacagccact 21016402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 253 - 387
Target Start/End: Complemental strand, 29351128 - 29350994
Alignment:
Q  253 tataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcatctttttgaacttgttcatggtcagcggggagtgaaa 352  Q
    ||||| ||| || ||||| ||||| || ||||||||| |||||  ||||||||||||| |||||||| || | |||| |||| |||| ||||||||||||    
T  29351128 tataattatcaagaaaatagtgaaagataatatttcacaacctcattcttcttgtttgagtcatcttcttaagcttgctcattgtcaccggggagtgaaa 29351029  T
Q  353 gtagagaccctgtatacatagccactttggatcca 387  Q
    | | |||| || | |||||  |||||| |||||||    
T  29351028 gcatagactctctgtacatgaccacttcggatcca 29350994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 374
Target Start/End: Original strand, 11023849 - 11023982
Alignment:
Q  241 atacaatataattataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcatctttttgaacttgttcatggtcag 340  Q
    ||||| ||||||||||||||| || |||| | ||||| | ||| ||||| ||| |  |||||||| | ||||||||||| ||  | |||||||  ||||     
T  11023849 atacactataattataaatattaagaaaaagttgaagaaaaatgtttcacaacttcattcttcttctgtgtgtcatcttcttagatttgttcactgtcac 11023948  T
Q  341 cggggagtgaaagtagagaccctgtatacatagc 374  Q
    ||||||||||||| || ||| |||||||||||||    
T  11023949 cggggagtgaaagcagggactctgtatacatagc 11023982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 662
Target Start/End: Original strand, 11024148 - 11024264
Alignment:
Q  543 aagagtcttagtccaagatgaatgcaacttggaatctttcatcacccacatttgaaatttgttatggtcctccaaagtccaaagactgagaaattctcca 642  Q
    |||||||||||||||||| |||||||  ||| | |||||||| ||||| |||| ||  ||||||    || ||| || ||| ||||||||||||||||||    
T  11024148 aagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa--ttgttacacccc-ccatagcccatagactgagaaattctcca 11024244  T
Q  643 aatacccacaaaccacaatc 662  Q
    |||| ||||||| |||||||    
T  11024245 aatatccacaaatcacaatc 11024264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 625 - 661
Target Start/End: Original strand, 47451630 - 47451666
Alignment:
Q  625 agactgagaaattctccaaatacccacaaaccacaat 661  Q
    ||||| |||||||||||||||||||||||||||||||    
T  47451630 agactaagaaattctccaaatacccacaaaccacaat 47451666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 610 - 663
Target Start/End: Original strand, 11015200 - 11015253
Alignment:
Q  610 tcctccaaagtccaaagactgagaaattctccaaatacccacaaaccacaatct 663  Q
    ||||||| || ||| ||||| |||||||||||||||| ||||||| ||||||||    
T  11015200 tcctccatagcccatagacttagaaattctccaaatatccacaaatcacaatct 11015253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 24382022 - 24381953
Alignment:
Q  69 caacatgcataaattaaccagattagtttaccatataaaacaatttcaagcagtcacaacaacatacatt 138  Q
    ||||||||||||| ||| || |  | |||||||||| ||||||||||||||||| | ||||| |||||||    
T  24382022 caacatgcataaactaatcatacgaatttaccatatgaaacaatttcaagcagtgaaaacaagatacatt 24381953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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