View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11704_low_4 (Length: 612)
Name: NF11704_low_4
Description: NF11704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11704_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 11 - 272
Target Start/End: Complemental strand, 36961581 - 36961320
Alignment:
| Q |
11 |
cacagacacggaaagttgaaaatgaagttgggaagttcataatgaatgtgtacaaagagagaaaagttacctaccttgtttacgggtaaaggaacggtga |
110 |
Q |
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| T |
36961581 |
cacaaacacggaaagttgaaaacgaagttgggaagttcataatgaatgtttacaaagagagaaaagttacctaccttgtttacgggtaaaggaacggtga |
36961482 |
T |
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| Q |
111 |
agctcgtagagagtagacacggtaccattttcaagaacatccacctctctcttcacagtgcgggaaccgggaaatggagttatattcgccaacgggtgaa |
210 |
Q |
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| T |
36961481 |
agctcgtagagagtagacacagtaccattttcaagaacatccacctctctcttcacagtgcgggaaccgggaaatggagttatattcgccaacgggtgaa |
36961382 |
T |
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| Q |
211 |
taacccgaatttgatcccaacttttaaccgggttgacccggtttcatacccattactattaa |
272 |
Q |
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| T |
36961381 |
taacccgaatttggtcccaagttttaaccgggttgacccggtttcatacccattactattaa |
36961320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 269 - 435
Target Start/End: Complemental strand, 36961292 - 36961127
Alignment:
| Q |
269 |
ttaaacggaccaaaatctttcttatttttattactttagctctccattattcaattctccaccagaccaaaaagatggatgtctctttttgctattaaaa |
368 |
Q |
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| T |
36961292 |
ttaaacggaccaaaatatttcttatttttattactttagctctccattattcaattctccaccagaccaaaaagatggatgtctc-ttttgatattaaaa |
36961194 |
T |
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| Q |
369 |
aatgattgtcacgttaattaattaatagcaaaagagacaacaaaagtctaaaaagaaaagaattaca |
435 |
Q |
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| T |
36961193 |
aatgattgtcacgttaattaattaatagcaaaagagacaacaaaaatctaagaagaaaagaattaca |
36961127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 428 - 595
Target Start/End: Complemental strand, 36961092 - 36960936
Alignment:
| Q |
428 |
gaattacactattaagttcaccttgaagagtcttaagaactttaacatgtaagtccattcaaagaaaaaactaaaattggtgagccattatgcacttata |
527 |
Q |
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| T |
36961092 |
gaatgacactattaagttcaccttgaagagtcttaagaactttaacatgtaagtc-attcaaagaaaaaactaaaattggtgagccattatgcacttata |
36960994 |
T |
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| Q |
528 |
ttgctctcccgctaggaatgattgacaatgatgggcgagcttccattgatttaacacaccacgttagt |
595 |
Q |
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| T |
36960993 |
ttgctctcccgccagg----------aatgatgggcaagcttccattgatttaacacaccatgttagt |
36960936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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