View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11704_low_5 (Length: 611)
Name: NF11704_low_5
Description: NF11704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11704_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 40676158 - 40675868
Alignment:
| Q |
18 |
aaattaaggcaagttctgttggttattctatgttatcaaaataaagatctggaaggttgttttactctaccattttccttaatttttgtgaattttcgaa |
117 |
Q |
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| T |
40676158 |
aaattaaggcaagttctgttggttattctatgttatcaaaataaagatctggaaggttgttttactctaccattttccttaagttttgtgaattttcgaa |
40676059 |
T |
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| Q |
118 |
gggcacaacatgagtgttcagatattgtctcggccaattccttgacttttggccaggtagccatgacactatcttacagaaacatcttaaattcaggata |
217 |
Q |
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| T |
40676058 |
gggcacaacatgagtgttcagaatttgtctcggccaattccttgacttttggccaggtagctatgacactatctaacagaaacatctcaaattcaggata |
40675959 |
T |
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| Q |
218 |
ccagtgtgtaagtaatgcttctacacc----agagagattagcagcaagatcacttgtaaaatgcatcagaaagtaaacaaattaccggga |
304 |
Q |
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| T |
40675958 |
ctagtgtgtaagtaatgcttctacacgtactagagagattagcggcaggatcacttgtaaaatgcatcagaaagtagacaaattaccggga |
40675868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 381 - 589
Target Start/End: Complemental strand, 40675869 - 40675661
Alignment:
| Q |
381 |
gatatcggagtccactatttgcttgcaatctgtttctagctcaacatgaaactcctctttgccttgtaaccatgtcagagtttgcagctcaatgtgcaac |
480 |
Q |
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| T |
40675869 |
gatatcggagtccactatttgcttgcaatctgtttctagctcaacatgaaactcctctttgccttgtaaccatgtcagagtttgcagctcaatgtgcaac |
40675770 |
T |
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| Q |
481 |
ttctctttgccgtgtaaccatatcagagtcttcattaaactgtttgcttcagcttcacatggcgaaggtgttcctacaaaccacgtattccgtgcttgga |
580 |
Q |
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| T |
40675769 |
ttctctttgccgtgtaaccatatcagagtctgccttaaactgtttgcttcagcttcacatggcgaaggtgttcctacaaaccacatattccgtgcttgga |
40675670 |
T |
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| Q |
581 |
ccataactc |
589 |
Q |
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| T |
40675669 |
ccataactc |
40675661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 528 - 589
Target Start/End: Complemental strand, 40684682 - 40684621
Alignment:
| Q |
528 |
ttcagcttcacatggcgaaggtgttcctacaaaccacgtattccgtgcttggaccataactc |
589 |
Q |
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| T |
40684682 |
ttcagcttcgcttggcgaaggtgttcctataaaccacccagtccgtgcttggaccataactc |
40684621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 21089598 - 21089559
Alignment:
| Q |
22 |
taaggcaagttctgttggttattctatgttatcaaaataa |
61 |
Q |
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| T |
21089598 |
taaggcaagctctgttgtttattctatgttatcaaaataa |
21089559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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