View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11704_low_9 (Length: 436)
Name: NF11704_low_9
Description: NF11704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11704_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 416
Target Start/End: Complemental strand, 2019460 - 2019059
Alignment:
| Q |
17 |
gaaggaacaccagtatcaattaaataatcaatgatccatataattgaaacccaagttatctttgagaaatagatatgaaagagaatatgag-gggaattt |
115 |
Q |
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| T |
2019460 |
gaaggaacaccagtatcaattaaataatcaatgatccatataattgaaacccaagttatctttgagaaatagatatgaaagagaatatgagagggaatct |
2019361 |
T |
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| Q |
116 |
gaatattcttcattgatcgtcgtttagtaatgattacaggatgattggtatttatagaggtcaaatccctctaactgatttgattccgttagttagaaat |
215 |
Q |
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| T |
2019360 |
gaatattcttcattgatcaacgtttagtaatgattacaggatgattggtatttatagaggtcaaatccctctaactgatttgattcagttagttagaaat |
2019261 |
T |
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| Q |
216 |
ctctcttagactagctagatgtgagagctgttattctacaggctatacacagctacaataggctatatttctatactgaaat-caacatagtagcatgcg |
314 |
Q |
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| T |
2019260 |
ctctcttagactaggtagatgtgagagctgttattctacaggctatacacagctacaataggctatatttctatactgcaatacaacatagtagcatgcg |
2019161 |
T |
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| Q |
315 |
taaccatgaataagagtggaggctgcacaatactggtaatgaatgtacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgagatatctcc |
414 |
Q |
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| T |
2019160 |
taaccatgaataagagtggaggctgcacaatactggtaatgaatgtacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgagatatctcc |
2019061 |
T |
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| Q |
415 |
ag |
416 |
Q |
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| T |
2019060 |
ag |
2019059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 317 - 406
Target Start/End: Complemental strand, 2035978 - 2035889
Alignment:
| Q |
317 |
accatgaataagagtggaggctgcacaatactggtaatgaatgtacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgag |
406 |
Q |
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| T |
2035978 |
accatgaatgaaagtggagactgcacaatactcgtaatgaatgtacctggcttgtcgcagcagtataaatcttatcttcaaacctttgag |
2035889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 329 - 406
Target Start/End: Complemental strand, 2021778 - 2021701
Alignment:
| Q |
329 |
agtggaggctgcacaatactggtaatgaatgtacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgag |
406 |
Q |
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| T |
2021778 |
agtggaggcagcacaatactcgtaatgaatgtaccttgcttgtcgcagaagtgtaaatcttatcttcaaacctttgag |
2021701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 406
Target Start/End: Complemental strand, 1990230 - 1990139
Alignment:
| Q |
315 |
taaccatgaataagagtggaggctgcacaatactggtaatgaatgtacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgag |
406 |
Q |
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| T |
1990230 |
taaccatgaatgaaagtggagactgcacaatactcgtaatgaatgtacctggcttgccgcatcagtatagatcttatcttcaaacctttgag |
1990139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 1990494 - 1990425
Alignment:
| Q |
17 |
gaaggaacaccagtatcaa-ttaaataatcaatgatccatataattgaaacccaagttatctttgagaaa |
85 |
Q |
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| T |
1990494 |
gaaggaacaccagtatcaagttaaataatcgatgttcaatatagtagaaacctaagctatctttgagaaa |
1990425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 2021940 - 2021893
Alignment:
| Q |
163 |
gtatttatagaggtcaaatccctctaactgatttgattccgttagtta |
210 |
Q |
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| T |
2021940 |
gtatctataaaggtcaaatccctctaacttatttgattcagttagtta |
2021893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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