View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11705_low_1 (Length: 914)
Name: NF11705_low_1
Description: NF11705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11705_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 4e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 648 - 896
Target Start/End: Complemental strand, 43170025 - 43169774
Alignment:
| Q |
648 |
attcactcacttgcttcatcttgttgtttttgtcgatttgtggctcgaacacactcttgatcccagttatagatcaatttcagaggttgttattttgcaa |
747 |
Q |
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| T |
43170025 |
attcactcacttgcttcatcttgttgtttttgtcgatttgtggctcgaacacactcttgatcccagttatagatcaatttcagaggttgttattttgaaa |
43169926 |
T |
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| Q |
748 |
aacctggtttttaatggtaattaagagcatgagttgttttgcatttttaaatgag---tgnnnnnnnnngttgctaatccacactaattaggatctctag |
844 |
Q |
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| T |
43169925 |
aacctggtttttaatggtaattaatagcatgagttgttttgcatttttaaatgagttttttttttttctttttctaatccaccctaattaggatctctag |
43169826 |
T |
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| Q |
845 |
cgctccaaattatctcatgtcttatgttctttgaaaccactatgagactaat |
896 |
Q |
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| T |
43169825 |
cgctccaaattatctcacgtcttatgtcctttgaaaccactatgagactaat |
43169774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 184 - 369
Target Start/End: Complemental strand, 43170209 - 43170023
Alignment:
| Q |
184 |
attcccaccagtaccggtataagatttctggttgaacatgtggttataagtattttgattttctaatatgctgccttgtataaattagaaaatagactag |
283 |
Q |
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| T |
43170209 |
attcccaccagtaccggtataagatttctggttgaacatgtggttataagtatttttattttctaatatgctgtcttgtataaattagaaaatagattag |
43170110 |
T |
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| Q |
284 |
ttacataatttgaagtaagttactagcgagctgcaagtttgacagtgtcactgatttgctatttgattaaat-ttttacactctatt |
369 |
Q |
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| T |
43170109 |
ttacataatttgaagtaagttactagcgagctgcaagtttgacagtgtcactgatttgctatttgattaaattttttacactctatt |
43170023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 43170349 - 43170216
Alignment:
| Q |
16 |
tcaacttctagcagtatcaatgtattttatttcccttttgcatcatggtcgacaatgaggtggttgcacaaaatccgataagtagctcacttttcttaca |
115 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
43170349 |
tcaacttctagcagcatcaatgtattttatttcccttttgcatcatggtcgacattaaggtggttgcgcaaaatccgataagcagctcacttttcttaca |
43170250 |
T |
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| Q |
116 |
ggtaactcaagatgactgaccaactttaacataa |
149 |
Q |
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| T |
43170249 |
ggtaactcaagatgactgaccaactttaacataa |
43170216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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