View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11705_low_10 (Length: 324)
Name: NF11705_low_10
Description: NF11705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11705_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 24565119 - 24564821
Alignment:
| Q |
17 |
aattttaccaaaaaggacatattcaaccggttagtttattcgctatataactaacttaccgattatcattgtaaattcatgctttacatactagctgacc |
116 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||| |
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| T |
24565119 |
aattttaccaaaaaggacatattcaaccagttagtttattcgctatataactaacttaccgattatcattgtaaattcatgccttacgtaatagctgacc |
24565020 |
T |
|
| Q |
117 |
tatctactttgtttgaacaaacagatccttagtagtgtttcctaccatcaatatttacagtggttgatgtataatgtgtgaatgttttaaacctcggaaa |
216 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||| |||| |
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| T |
24565019 |
tatctactttgtttgaccaaacagatccttagtaatgtttcctaccatcattatttacagtggttgatgtatagtgtgtgaatgttgtaaacctcagaaa |
24564920 |
T |
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| Q |
217 |
taccgaatttgatccatccagat--nnnnnnnntaagtgttacagccattagtagttaaaaacttgggaggtccattgactacctcatgtatgctctctg |
314 |
Q |
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|||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||| |||| |
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| T |
24564919 |
taccgaatttgatccatccaaataaaaaaaaaataagtgttacaaccattagtagttaaaaacatgggaggtccattgacta-ctcatgtatgctttctg |
24564821 |
T |
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