View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11705_low_11 (Length: 310)
Name: NF11705_low_11
Description: NF11705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11705_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 4271240 - 4271520
Alignment:
| Q |
16 |
caattttttgttgtgggggcgactgagggtgtgggatgcaaatgtcccacattacagttcactgtaaaccaaaatctttcgcaaataataaaatataatt |
115 |
Q |
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| T |
4271240 |
caattttttgttgtgggggcgactgagggtgtgggaggcaaaggtcccacattacagttcactgtaaaccaaaatctttcgcaaataataaaacataatt |
4271339 |
T |
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| Q |
116 |
gccgctactttgtagtcggagatatagacacaattggctgaacttcattaccgaacgtcatgtgtttgtttgcgataactgttccgttaatcttttgtac |
215 |
Q |
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| T |
4271340 |
gccgctactttgtagtcggagacatagacacatttggctgaacttcattaccgaacgtcatgtgtttgtttgtgataactgttccgttaatcttttgtac |
4271439 |
T |
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| Q |
216 |
cagcttgttgttctagc-aatgactaataatcttgatttatttgtatcatcgtaatatagttttctgtcatcctagcttcatctcat |
301 |
Q |
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| T |
4271440 |
cag------attctagcaaatgactaataatcttgatttatttgtatcatcgtaatatagttttctgtcatcttagcttcatctcat |
4271520 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 31592834 - 31592893
Alignment:
| Q |
122 |
actttgtagtcggagatatagacacaattggctgaacttcattaccgaacgtcatgtgtt |
181 |
Q |
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| T |
31592834 |
actttgtagttggagagatagacacaattggccgaacttcataaccaaacatcatgtgtt |
31592893 |
T |
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