View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11705_low_14 (Length: 275)
Name: NF11705_low_14
Description: NF11705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11705_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 9e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 92 - 260
Target Start/End: Original strand, 3196137 - 3196305
Alignment:
| Q |
92 |
cttattgacaaatgttattagaaaatatgctactgttgtaataaaatcatttttattttctcatgttcattctaatcccgcctaaagagaaaaacaattg |
191 |
Q |
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| T |
3196137 |
cttattgacaaatgttattagaaaatatgctactgttgtaataaaatcatttttattttctcatgttcattctaatcccgtctaaagagaaaaacaattg |
3196236 |
T |
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| Q |
192 |
tctaataaagaagtgttcaattatttttagggnnnnnnncttataaattgagtcacttactatgataaa |
260 |
Q |
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| T |
3196237 |
tctaataaagaagtgttcaattatttttagggaaaaaaacttataaattgagtcacttactatgataaa |
3196305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 3196056 - 3196106
Alignment:
| Q |
13 |
gagatggtgggctcgcacacaccgttgggttagggggatgaccatctaaca |
63 |
Q |
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| T |
3196056 |
gagatggtgggctcgcacacaccgttgggttagggggatgaccatctaaca |
3196106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 32683644 - 32683709
Alignment:
| Q |
158 |
tcattctaatcccgcctaaagagaaaaacaattgtctaataaagaagtgttcaattatttttaggg |
223 |
Q |
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| T |
32683644 |
tcattctaattccatctaaagagaaaagcaattgtctaataaaaaattatacaattgtttttaggg |
32683709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 39139042 - 39139123
Alignment:
| Q |
142 |
ttttattttctcatgttcattctaatcccgcctaaagagaaaaacaattgtctaataaagaagtgttcaattatttttaggg |
223 |
Q |
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| T |
39139042 |
ttttattttctcataatcattttaatcccacataaagagaaaaacaattgtctaataaagaattgtcgaattatttttaggg |
39139123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 1445327 - 1445380
Alignment:
| Q |
159 |
cattctaatcccgcctaaagagaaaaacaattgtctaataaagaagtgttcaat |
212 |
Q |
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| T |
1445327 |
cattctaatctcgtttaaagagaaaaacaattgtctaataatgaattgttcaat |
1445380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 32779348 - 32779392
Alignment:
| Q |
159 |
cattctaatcccgcctaaagagaaaaacaattgtctaataaagaa |
203 |
Q |
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| T |
32779348 |
cattttaatcccacataaagagaaaaacaattgtctaataaagaa |
32779392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 5439537 - 5439601
Alignment:
| Q |
158 |
tcattctaatcccgcctaaagagaaaaacaattgtctaataaagaagtgttcaattatttttagg |
222 |
Q |
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| T |
5439537 |
tcattctaatcctacctaaagagaaaaacaattgtctaattaagaattgttcaaatatttttagg |
5439601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 40849767 - 40849722
Alignment:
| Q |
158 |
tcattctaatcccgcctaaagagaaaaacaattgtctaataaagaa |
203 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
40849767 |
tcattctaatcccacctaaagagaaaaacacttgtctaataaagaa |
40849722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 40838590 - 40838536
Alignment:
| Q |
164 |
taatcccgcctaaagagaaaaacaattgtctaataaagaagtgttcaattatttt |
218 |
Q |
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||||||| | |||||||||||||||| ||||||||||||| ||| |||||||||| |
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| T |
40838590 |
taatcccacttaaagagaaaaacaatcgtctaataaagaattgtacaattatttt |
40838536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 40839307 - 40839253
Alignment:
| Q |
164 |
taatcccgcctaaagagaaaaacaattgtctaataaagaagtgttcaattatttt |
218 |
Q |
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||||||| | |||||||||||||||| |||||||||| || ||| |||||||||| |
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| T |
40839307 |
taatcccacttaaagagaaaaacaatcgtctaataaaaaattgtacaattatttt |
40839253 |
T |
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