View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11705_low_18 (Length: 238)
Name: NF11705_low_18
Description: NF11705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11705_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 4485444 - 4485588
Alignment:
| Q |
1 |
ccttggagtactcgtttataccatgttaatcatattttgagatgttttagtgttaggcataaccatatttttgagagaataatatttttctctcagtcgc |
100 |
Q |
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| T |
4485444 |
ccttggagtactcgtttataccatgttaatcatattttgagatgttttagtgttaggcataaccatatttttgagagaataatatttttctctcagtcgc |
4485543 |
T |
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| Q |
101 |
tttataaaagatcatcttcctaaaattacaagtattaagaaaagt |
145 |
Q |
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| T |
4485544 |
tttatacaagatcatcttcctaaaattacaagtattaagataagt |
4485588 |
T |
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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 4485588 - 4485628
Alignment:
| Q |
184 |
tcaaattttccctttgcatagatatatttaatgttaatttt |
224 |
Q |
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| T |
4485588 |
tcaaattttccctttgcatagatatatttaatgttaatttt |
4485628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 38639255 - 38639291
Alignment:
| Q |
131 |
agtattaagaaaagttgaagaaataaatttgtcacaa |
167 |
Q |
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| T |
38639255 |
agtattaagaaaagttgaagtaataaatttgtcacaa |
38639291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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