View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11705_low_5 (Length: 482)
Name: NF11705_low_5
Description: NF11705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11705_low_5 |
 | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
| [»] scaffold0224 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 21263013 - 21262567
Alignment:
| Q |
19 |
aaattcctatatgtgcacacagtatatgttaaaaaattataacccatttgttatttctatgcttaaagttgattttattcttgaatttttatagatgatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21263013 |
aaattcctatatgtgcacacagtatatgttaaaaaattgtaacccatctgttatttctatgcttaaagttgattttattcttgaatttttatagatgacc |
21262914 |
T |
|
| Q |
119 |
aatgaagacataagagccaaatatgcgaaattgtgtcaaatgatgattgttcaattatctatcattattgttctaatatgttcactaaaaaacaagtcta |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21262913 |
aatgaagacataagagccaaatatgcaaaattgtgtcaaatgatgattgttcaattatctatcattattgttctaatatgttcactaaaaaacaagtcta |
21262814 |
T |
|
| Q |
219 |
gaagagcccaaatacattctagaatcacagagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21262813 |
gaagagcccaaatacattctagaatcacagagcatagggagagagttagaaatgaggtaatgaaacatattataggaagtgatcgatgttatgatataat |
21262714 |
T |
|
| Q |
319 |
tcgtatgagtcccaaagctttcttaaacttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagca |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21262713 |
tcgtatgagtcccaaagctttcttaaacttgtgcatcttattacgagatcgcggtggacttacacatacacgaagggcgtctattgaggaacaagtagca |
21262614 |
T |
|
| Q |
419 |
aaatttcttcacatggtaggacataatgtgagagatcgtgtgatgtc |
465 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
21262613 |
aaatttcttcagatggtaggacataatgtgagaaatcatgtgatgtc |
21262567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 107 - 466
Target Start/End: Original strand, 33092023 - 33092379
Alignment:
| Q |
107 |
ttatagatgatcaatgaagacataagagccaaatatgcgaaattgtgtcaaatgatgattgttcaattatctatcattattgttctaatatgttcactaa |
206 |
Q |
| |
|
||||||||||| ||||||||||| ||| | ||| || ||||||| ||||||||||||||||||| |||| |||||||| |||||||||| | |||| |
|
|
| T |
33092023 |
ttatagatgattaatgaagacatgagaacaaaacatttgaaattgcttcaaatgatgattgttcaagtatccatcattatagttctaatatttcgcctaa |
33092122 |
T |
|
| Q |
207 |
aaaacaagtctagaagagcccaaatacattctagaatcacagagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatg |
306 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||| |
|
|
| T |
33092123 |
aaaacaagtctagat---ctcaaataccctctagaatcatagagcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatg |
33092219 |
T |
|
| Q |
307 |
ttatgatataattcgtatgagtcccaaagctttcttaaacttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
33092220 |
ttatgatataattcgtatgagtcccaaagctttcgtaaacttgtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgag |
33092319 |
T |
|
| Q |
407 |
gaacaagtagcaaaatttcttcacatggtaggacataatgtgagagatcgtgtgatgtcc |
466 |
Q |
| |
|
||||||||||| ||||||||||||| || |||||||| || ||| |||||||| ||||| |
|
|
| T |
33092320 |
gaacaagtagccaaatttcttcacacagtcggacataacgtcagaaatcgtgtgttgtcc |
33092379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 107 - 466
Target Start/End: Complemental strand, 20680 - 20324
Alignment:
| Q |
107 |
ttatagatgatcaatgaagacataagagccaaatatgcgaaattgtgtcaaatgatgattgttcaattatctatcattattgttctaatatgttcactaa |
206 |
Q |
| |
|
|||||||||| ||||||||||| ||| | ||| || ||||||| ||||||||||||||||||| |||| |||||||| |||||||||| | |||| |
|
|
| T |
20680 |
ttatagatgactaatgaagacatgagaacaaaacatttgaaattgcttcaaatgatgattgttcaagtatccatcattatagttctaatatttcgcctaa |
20581 |
T |
|
| Q |
207 |
aaaacaagtctagaagagcccaaatacattctagaatcacagagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatg |
306 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||| |
|
|
| T |
20580 |
aaaacaagtctagat---ctcaaataccctctagaatcatagagcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatg |
20484 |
T |
|
| Q |
307 |
ttatgatataattcgtatgagtcccaaagctttcttaaacttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
20483 |
ttatgatataattcgtatgagtcccaaagctttcgtaaacttgtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgag |
20384 |
T |
|
| Q |
407 |
gaacaagtagcaaaatttcttcacatggtaggacataatgtgagagatcgtgtgatgtcc |
466 |
Q |
| |
|
||||||||||| ||||||||||||| || |||||||| || ||| |||||||| ||||| |
|
|
| T |
20383 |
gaacaagtagccaaatttcttcacacagtcggacataacgtcagaaatcgtgtgttgtcc |
20324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 5e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 107 - 466
Target Start/End: Complemental strand, 22530543 - 22530187
Alignment:
| Q |
107 |
ttatagatgatcaatgaagacataagagccaaatatgcgaaattgtgtcaaatgatgattgttcaattatctatcattattgttctaatatgttcactaa |
206 |
Q |
| |
|
|||||||||| ||||||||||| ||| | ||| || ||||||| ||||||||||||||||||| |||| |||||||| |||||||||| | |||| |
|
|
| T |
22530543 |
ttatagatgactaatgaagacatgagaacaaaacatttgaaattgcttcaaatgatgattgttcaagtatccatcattatagttctaatatttcgcctaa |
22530444 |
T |
|
| Q |
207 |
aaaacaagtctagaagagcccaaatacattctagaatcacagagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatg |
306 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||| |
|
|
| T |
22530443 |
aaaacaagtctagat---ctcaaataccctctagaatcatagagcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatg |
22530347 |
T |
|
| Q |
307 |
ttatgatataattcgtatgagtcccaaagctttcttaaacttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
22530346 |
ttatgatataattcgtatgagtcccaaagctttcgtaaacttgtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgag |
22530247 |
T |
|
| Q |
407 |
gaacaagtagcaaaatttcttcacatggtaggacataatgtgagagatcgtgtgatgtcc |
466 |
Q |
| |
|
||||||||||| ||||||||||||| || |||||||| || ||| |||||||| ||||| |
|
|
| T |
22530246 |
gaacaagtagccaaatttcttcacacagtcggacataacgtcagaaatcgtgtgttgtcc |
22530187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 107 - 466
Target Start/End: Complemental strand, 22535228 - 22534872
Alignment:
| Q |
107 |
ttatagatgatcaatgaagacataagagccaaatatgcgaaattgtgtcaaatgatgattgttcaattatctatcattattgttctaatatgttcactaa |
206 |
Q |
| |
|
|||||||||| ||||||||||| ||| | ||| || ||||||| ||||||||||||||||||| |||| |||||||| |||||||||| | |||| |
|
|
| T |
22535228 |
ttatagatgactaatgaagacatgagaacaaaacatttgaaattgcttcaaatgatgattgttcaagtatccatcattatagttctaatatttcgcctaa |
22535129 |
T |
|
| Q |
207 |
aaaacaagtctagaagagcccaaatacattctagaatcacagagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatg |
306 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||| |
|
|
| T |
22535128 |
aaaacaagtctagat---ctcaaataccctctagaatcatagagcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatg |
22535032 |
T |
|
| Q |
307 |
ttatgatataattcgtatgagtcccaaagctttcttaaacttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
22535031 |
ttatgatataattcgtatgagtcccaaagctttcgtaaacttgtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgag |
22534932 |
T |
|
| Q |
407 |
gaacaagtagcaaaatttcttcacatggtaggacataatgtgagagatcgtgtgatgtcc |
466 |
Q |
| |
|
||||||||||| ||||||||||||| || |||||||| || ||| |||||||| ||||| |
|
|
| T |
22534931 |
gaacaagtagccaaatttcttcacacagtcggacataacgtcagaaatcgtgtgttgtcc |
22534872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 107 - 466
Target Start/End: Complemental strand, 25993152 - 25992796
Alignment:
| Q |
107 |
ttatagatgatcaatgaagacataagagccaaatatgcgaaattgtgtcaaatgatgattgttcaattatctatcattattgttctaatatgttcactaa |
206 |
Q |
| |
|
|||||||||| ||||||||||| ||| | ||| || ||||||| ||||||||||||||||||| |||| |||||||| |||||||||| | |||| |
|
|
| T |
25993152 |
ttatagatgactaatgaagacatgagaacaaaacatttgaaattgcttcaaatgatgattgttcaagtatccatcattatagttctaatatttcgcctaa |
25993053 |
T |
|
| Q |
207 |
aaaacaagtctagaagagcccaaatacattctagaatcacagagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatg |
306 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||| |
|
|
| T |
25993052 |
aaaacaagtctagat---ctcaaataccctctagaatcatagagcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatg |
25992956 |
T |
|
| Q |
307 |
ttatgatataattcgtatgagtcccaaagctttcttaaacttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
25992955 |
ttatgatataattcgtatgagtcccaaagctttcgtaaacttgtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgag |
25992856 |
T |
|
| Q |
407 |
gaacaagtagcaaaatttcttcacatggtaggacataatgtgagagatcgtgtgatgtcc |
466 |
Q |
| |
|
||||||||||| ||||||||||||| || |||||||| || ||| |||||||| ||||| |
|
|
| T |
25992855 |
gaacaagtagccaaatttcttcacacagtcggacataacgtcagaaatcgtgtgttgtcc |
25992796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 107 - 466
Target Start/End: Complemental strand, 13190972 - 13190616
Alignment:
| Q |
107 |
ttatagatgatcaatgaagacataagagccaaatatgcgaaattgtgtcaaatgatgattgttcaattatctatcattattgttctaatatgttcactaa |
206 |
Q |
| |
|
|||||||||| ||||||||||| ||| | ||| || ||||||| ||||||||||||||||||| |||| |||||||| |||||||||| | |||| |
|
|
| T |
13190972 |
ttatagatgactaatgaagacatgagaacaaaacatttgaaattgcttcaaatgatgattgttcaagtatccatcattatagttctaatatttcgcctaa |
13190873 |
T |
|
| Q |
207 |
aaaacaagtctagaagagcccaaatacattctagaatcacagagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatg |
306 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||| |
|
|
| T |
13190872 |
aaaacaagtctagat---ctcaaataccctctagaatcaaagagcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatg |
13190776 |
T |
|
| Q |
307 |
ttatgatataattcgtatgagtcccaaagctttcttaaacttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||| |||| |||||||| ||| |
|
|
| T |
13190775 |
ttatgatataattcgtatgagtcccaaagctttcgtaaacttgtgcaccttattacgagatcacggtgggcttacacatacatgaagagcatctatcgag |
13190676 |
T |
|
| Q |
407 |
gaacaagtagcaaaatttcttcacatggtaggacataatgtgagagatcgtgtgatgtcc |
466 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||||||||| ||| |||||||| ||||| |
|
|
| T |
13190675 |
gaacaagtagccaaatttcttcacacagtcggacataatgtcagaaatcgtgtgttgtcc |
13190616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 107 - 466
Target Start/End: Original strand, 20984113 - 20984469
Alignment:
| Q |
107 |
ttatagatgatcaatgaagacataagagccaaatatgcgaaattgtgtcaaatgatgattgttcaattatctatcattattgttctaatatgttcactaa |
206 |
Q |
| |
|
|||||||||| ||||||||||| ||| | ||| || ||||||| ||||||||||||||||||| |||| |||||||| |||||||||| | |||| |
|
|
| T |
20984113 |
ttatagatgactaatgaagacatgagaacaaaacatttgaaattgcttcaaatgatgattgttcaagtatccatcattatagttctaatatttcgcctaa |
20984212 |
T |
|
| Q |
207 |
aaaacaagtctagaagagcccaaatacattctagaatcacagagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatg |
306 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||| |
|
|
| T |
20984213 |
aaaacaagtctagat---ctcaaataccctctagaatcatagagcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatg |
20984309 |
T |
|
| Q |
307 |
ttatgatataattcgtatgagtcccaaagctttcttaaacttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
20984310 |
ttatgatataattcgtatgagtcccaaagctttcgtaaacttgtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgag |
20984409 |
T |
|
| Q |
407 |
gaacaagtagcaaaatttcttcacatggtaggacataatgtgagagatcgtgtgatgtcc |
466 |
Q |
| |
|
||||||||||| ||||||||||||| || |||||||| || ||| |||||||| ||||| |
|
|
| T |
20984410 |
gaacaagtagccaaatttcttcacacagtcggacataacgtcagaaatcgtgtgttgtcc |
20984469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 107 - 466
Target Start/End: Complemental strand, 49367621 - 49367265
Alignment:
| Q |
107 |
ttatagatgatcaatgaagacataagagccaaatatgcgaaattgtgtcaaatgatgattgttcaattatctatcattattgttctaatatgttcactaa |
206 |
Q |
| |
|
|||||||||| ||||||||||| ||| | ||| || ||||||| ||||||||||||||||||| |||| |||||||| |||||||||| | |||| |
|
|
| T |
49367621 |
ttatagatgactaatgaagacatgagaacaaaacatttgaaattgcttcaaatgatgattgttcaagtatccatcattatagttctaatatttcgcctaa |
49367522 |
T |
|
| Q |
207 |
aaaacaagtctagaagagcccaaatacattctagaatcacagagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatg |
306 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||| |
|
|
| T |
49367521 |
aaaacaagtctagat---ctcaaataccctctagaatcatagagcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatg |
49367425 |
T |
|
| Q |
307 |
ttatgatataattcgtatgagtcccaaagctttcttaaacttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgag |
406 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
49367424 |
ttatgatataatttgtatgagtcccaaagctttcgtaaacttgtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgag |
49367325 |
T |
|
| Q |
407 |
gaacaagtagcaaaatttcttcacatggtaggacataatgtgagagatcgtgtgatgtcc |
466 |
Q |
| |
|
||||||||||| ||||||||||||| || |||||||| || ||| |||||||| ||||| |
|
|
| T |
49367324 |
gaacaagtagccaaatttcttcacacagtcggacataacgtcagaaatcgtgtgttgtcc |
49367265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 107 - 466
Target Start/End: Complemental strand, 20716842 - 20716486
Alignment:
| Q |
107 |
ttatagatgatcaatgaagacataagagccaaatatgcgaaattgtgtcaaatgatgattgttcaattatctatcattattgttctaatatgttcactaa |
206 |
Q |
| |
|
|||||||||| ||||||||||| ||| | ||| || ||||||| ||||||||||||||||||| |||| |||||||| |||||||||| | |||| |
|
|
| T |
20716842 |
ttatagatgactaatgaagacatgagaacaaaacatttgaaattgcttcaaatgatgattgttcaagtatccatcattatagttctaatatttcgcctaa |
20716743 |
T |
|
| Q |
207 |
aaaacaagtctagaagagcccaaatacattctagaatcacagagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatg |
306 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||| |
|
|
| T |
20716742 |
aaaacaagtctagat---ctcaaataccctctagaatcatagagcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatg |
20716646 |
T |
|
| Q |
307 |
ttatgatataattcgtatgagtcccaaagctttcttaaacttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
20716645 |
ttatgatataattcgtatgagtcccaaagctttcgtaaacttgtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgag |
20716546 |
T |
|
| Q |
407 |
gaacaagtagcaaaatttcttcacatggtaggacataatgtgagagatcgtgtgatgtcc |
466 |
Q |
| |
|
||||||||||| ||||||||||||| || |||||||| || ||| |||||||| ||||| |
|
|
| T |
20716545 |
gaacaagtagccaaatttcttcacacagtcggacataacgtcagaaatcgtgtgttgtcc |
20716486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 11506 - 11426
Alignment:
| Q |
76 |
tatgcttaaagttgattttattcttgaatttttatagatgatcaatgaagacataagagccaaatatgcgaaattgtgtca |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11506 |
tatgcttaaagttgattttattcttgaatttttatagatgaccaatgaagacataagagccaaatatgcgaaattgtgtca |
11426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 11659 - 11593
Alignment:
| Q |
19 |
aaattcctatatgtgcacacagtatatgttaaaaaattataacccatttgttatttctatgcttaaa |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |
|
|
| T |
11659 |
aaattcctatatgtgcacacagtatatgttaaaaaattgtaacccatatgttatttctatgtttaaa |
11593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 42935265 - 42935345
Alignment:
| Q |
76 |
tatgcttaaagttgattttattcttgaatttttatagatgatcaatgaagacataagagccaaatatgcgaaattgtgtca |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42935265 |
tatgcttaaagttgattttattcttgaatttttatagatgaccaatgaagacataagagccaaatatgcgaaattgtgtca |
42935345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 42935112 - 42935178
Alignment:
| Q |
19 |
aaattcctatatgtgcacacagtatatgttaaaaaattataacccatttgttatttctatgcttaaa |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |
|
|
| T |
42935112 |
aaattcctatatgtgcacacagtatatgttaaaaaattgtaacccatatgttatttctatgtttaaa |
42935178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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