View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11705_low_7 (Length: 444)
Name: NF11705_low_7
Description: NF11705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11705_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 15 - 426
Target Start/End: Original strand, 55956107 - 55956518
Alignment:
| Q |
15 |
caaaggtacttaccaaagaaaaagctgttttagtaacattaagtggtagtgaaagtgaaacttgaattgattgtatgagcttttgcacctcttcttctct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55956107 |
caaaggtacttaccaaagaaaaagctgttttagtaacattaagtggtagtgaaagtgaaacttgaattgattgtatgagcttttgcacctcttcttctct |
55956206 |
T |
|
| Q |
115 |
aatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtctccaataatcaccgtatggagcataaacaata |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55956207 |
aatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtctccaataatcaccgtatggagcataaacaata |
55956306 |
T |
|
| Q |
215 |
tctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagatcatgtgtcttcattatctctttggccaaatcaggag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55956307 |
tctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagatcatgtgtcttcattatctctttggccaaatcaggag |
55956406 |
T |
|
| Q |
315 |
atgaaacaaccactgcagaaatttcaccaagctgaagatgcataagaggtccatatttgttggatagatctcgaagtttatgatgtggaagtgatcctcc |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
55956407 |
atgaaacaaccactgcagaaatttcaccaagctgaagatacataagaggtccatatttgttggatagatctcgaagagtatgatgtggaagtgatcctcc |
55956506 |
T |
|
| Q |
415 |
taatgctagttg |
426 |
Q |
| |
|
|||||||||||| |
|
|
| T |
55956507 |
taatgctagttg |
55956518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 409
Target Start/End: Original strand, 55959551 - 55959948
Alignment:
| Q |
15 |
caaaggtacttaccaaagaaaaagctgttttagtaacattaagtggtagtgaaagtgaaacttgaattgattgtatgagcttttgcacctcttcttctct |
114 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||| ||||||| |||||||| ||||||| ||||| |||||||| |
|
|
| T |
55959551 |
caaaggtacttaccaaagagaaagctattttagtaacatcaagtggtagtgaaagtgaaccttgaatggattgtataagcttttctacctcatcttctct |
55959650 |
T |
|
| Q |
115 |
aatggaagaaaaataatgaacccttttagcactaa-----gaagctgtgatgtacatattttcctcatctgtctccaataatcaccgtatggagcataaa |
209 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||||||||||| | | |
|
|
| T |
55959651 |
aatggaagaaaaagattgaacccttttagcactaatataagaagttctgatgtacatattttcctcatttgtctccaataatcaccgtatggagcaaaga |
55959750 |
T |
|
| Q |
210 |
caatatctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagatcatgtgtcttcattatctctttggccaaatc |
309 |
Q |
| |
|
||||| | ||||||||||| | |||||| |||||||| | ||||| |||||| |||||||||| ||||||| ||||||||| |||||||||||| ||||| |
|
|
| T |
55959751 |
caataccagttgaatcataggctaatatattaggagcaatgagttttggcctttgaacaaaagcaagatcacgtgtcttcaatatctctttggctaaatc |
55959850 |
T |
|
| Q |
310 |
aggagatgaaacaaccactgcagaaatttcaccaagctgaagatgcataagaggtccatatttgttggatagatctcgaagtttatgatgtggaagtgat |
409 |
Q |
| |
|
||| ||||| ||||| | || |||||||||||| |||||||||||||||||||||||||||| || || |||| ||||||| |||| |||||||||||| |
|
|
| T |
55959851 |
aggggatgagacaactattgtagaaatttcacctagctgaagatgcataagaggtccatatt--tttgacagatttcgaagtgtatggtgtggaagtgat |
55959948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 84 - 426
Target Start/End: Original strand, 12426506 - 12426848
Alignment:
| Q |
84 |
attgtatgagcttttgcacctcttcttctctaatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtct |
183 |
Q |
| |
|
||||||| | ||||| |||| | ||||||||||||||||||||| | || |||||||||||||||||||| | ||||||||||||||| ||||||||||| |
|
|
| T |
12426506 |
attgtatcatcttttccaccccatcttctctaatggaagaaaaagattggacccttttagcactaagaagttctgatgtacatatttttctcatctgtct |
12426605 |
T |
|
| Q |
184 |
ccaataatcaccgtatggagcataaacaatatctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagatcatgt |
283 |
Q |
| |
|
|||||||||||| |||| |||| | | ||||||| |||| ||||||| |||||| || |||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
12426606 |
ccaataatcaccatatgaagcaaagataatatcttttgattcatatgttaatatatttggagctaggaattgtggcctctgaacaaaagaaagatcatgt |
12426705 |
T |
|
| Q |
284 |
gtcttcattatctctttggccaaatcaggagatgaaacaaccactgcagaaatttcaccaagctgaagatgcataagaggtccatatttgttggatagat |
383 |
Q |
| |
|
||||||||||||||||| | ||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12426706 |
gtcttcattatctctttagtcaaattaggggatgaaacaaccactgtagaaatttcaccaagctgaagatgcataagaggtccatatttgtgggatagat |
12426805 |
T |
|
| Q |
384 |
ctcgaagtttatgatgtggaagtgatcctcctaatgctagttg |
426 |
Q |
| |
|
||| |||| |||| ||||||||| |||| ||||||||||||| |
|
|
| T |
12426806 |
ctccaagtgtatggtgtggaagttttcctgctaatgctagttg |
12426848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 84 - 386
Target Start/End: Complemental strand, 12266314 - 12266012
Alignment:
| Q |
84 |
attgtatgagcttttgcacctcttcttctctaatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtct |
183 |
Q |
| |
|
||||||| | ||||| |||| | ||||||||||||||||||||| | || |||||||||||||||||||| | ||||||||||||||| ||||||||||| |
|
|
| T |
12266314 |
attgtatcatcttttccaccccatcttctctaatggaagaaaaagattggacccttttagcactaagaagttctgatgtacatatttttctcatctgtct |
12266215 |
T |
|
| Q |
184 |
ccaataatcaccgtatggag-cataaacaatatctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagatcatg |
282 |
Q |
| |
|
|||||||||||| |||| || ||| | ||||||| |||| ||||| | || ||| || ||||| |||| | |||||||| ||| |||||||||||||| |
|
|
| T |
12266214 |
ccaataatcaccatatgaagacatgag-aatatcttttgattcataggttattatattcggagcaaggaatcgtggcctctcaacgaaagaaagatcatg |
12266116 |
T |
|
| Q |
283 |
tgtcttcattatctctttggccaaatcaggagatgaaacaaccactgcagaaatttcaccaagctgaagatgcataagaggtccatatttgttggataga |
382 |
Q |
| |
|
|||| ||||||| ||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12266115 |
tgtcctcattatttctttggtcaaattaggggatgaaacaaccacggcagaaatttcaccaagctgaagatgcataagaggtccatatttgtgtgataga |
12266016 |
T |
|
| Q |
383 |
tctc |
386 |
Q |
| |
|
|||| |
|
|
| T |
12266015 |
tctc |
12266012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 372
Target Start/End: Complemental strand, 7140753 - 7140488
Alignment:
| Q |
107 |
tcttctctaatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtctccaataatcaccgtatggagcat |
206 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||||||| |||| || | | ||||||||| ||||| ||||||||||||||||| ||||||| | |
|
|
| T |
7140753 |
tcttctctaatgtaagaaaaagattgaacccttttagcacttagaatctctaagacacatatttttctcatttgtctccaataatcaccatatggagaaa |
7140654 |
T |
|
| Q |
207 |
aaacaatatctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagatcatgtgtcttcattatctctttggccaa |
306 |
Q |
| |
|
| ||||||||| | || |||| | ||| |||||| ||| | |||| |||||| | | ||||| || ||||||||| ||||||| || ||||| || |
|
|
| T |
7140653 |
atacaatatctttaaaaccataggctaaaattttaagagaaggaagttttggcctattagcaaaaacaacatcatgtgttttcattacttccttggctaa |
7140554 |
T |
|
| Q |
307 |
atcaggagatgaaacaaccactgcagaaatttcaccaagctgaagatgcataagaggtccatattt |
372 |
Q |
| |
|
|| | || ||||||||||||||| ||||||||| || || || ||||| | ||||||||||| |
|
|
| T |
7140553 |
atttgaggaagaaacaaccactgcattaatttcacctagttgtaggtgcattaatggtccatattt |
7140488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 372
Target Start/End: Complemental strand, 7152584 - 7152319
Alignment:
| Q |
107 |
tcttctctaatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtctccaataatcaccgtatggagcat |
206 |
Q |
| |
|
||||||||||| |||||||| | ||||||||||||||||| ||||| | | ||||||||| ||||| ||||||||| ||||||| ||||||| | |
|
|
| T |
7152584 |
tcttctctaatataagaaaaagattgaacccttttagcacttagaagttcaaagacacatatttttctcatttgtctccaaaaatcaccatatggagaaa |
7152485 |
T |
|
| Q |
207 |
aaacaatatctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagatcatgtgtcttcattatctctttggccaa |
306 |
Q |
| |
|
| ||||||||| ||||| |||| | | |||| ||| | || |||| |||||| | | |||||| | ||||||||| |||||||| || || ||||| |
|
|
| T |
7152484 |
atacaatatcttttgaaccataggccataatttcaggggaaagaagttttggcctattagcaaaagcagcatcatgtgttttcattatttcctttgccaa |
7152385 |
T |
|
| Q |
307 |
atcaggagatgaaacaaccactgcagaaatttcaccaagctgaagatgcataagaggtccatattt |
372 |
Q |
| |
|
| ||||||||| |||| ||| | ||||||||||||||| || | ||||| | |||||||||||| |
|
|
| T |
7152384 |
tttaggagatgatacaatcacagtagaaatttcaccaagttgtatgtgcattaaaggtccatattt |
7152319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 7130335 - 7130269
Alignment:
| Q |
162 |
tacatattttcctcatctgtctccaataatcaccgtatggagcataaacaatatctgttgaatcata |
228 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| ||||||| | | |||||||| ||||| |||| |
|
|
| T |
7130335 |
tacatatttttctcatttgtctccaataatcaccatatggagaaaatgcaatatcttttgaaccata |
7130269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 371
Target Start/End: Original strand, 22858457 - 22858553
Alignment:
| Q |
275 |
agatcatgtgtcttcattatctctttggccaaatcaggagatgaaacaaccactgc-agaaatttcaccaagctgaagatgcataagaggtccatatt |
371 |
Q |
| |
|
||||||||||| |||||||||||||| |||| ||| ||||||||||||| | ||| ||||| |||||| ||||| | ||||| ||||||||||||| |
|
|
| T |
22858457 |
agatcatgtgttttcattatctcttttgccatatcttgagatgaaacaacta-tgcaagaaagttcacctagctgcatgtgcatgagaggtccatatt |
22858553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 371
Target Start/End: Complemental strand, 22901831 - 22901735
Alignment:
| Q |
275 |
agatcatgtgtcttcattatctctttggccaaatcaggagatgaaacaaccactgc-agaaatttcaccaagctgaagatgcataagaggtccatatt |
371 |
Q |
| |
|
||||||||||| |||||||||||||| |||| || ||||||||||||| | ||| ||||| ||||||||||| | |||||| |||| |||||||| |
|
|
| T |
22901831 |
agatcatgtgttttcattatctcttttgccatttcttgagatgaaacaacta-tgcaagaaagctcaccaagctgcatatgcattagagatccatatt |
22901735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 371
Target Start/End: Original strand, 22907131 - 22907171
Alignment:
| Q |
331 |
agaaatttcaccaagctgaagatgcataagaggtccatatt |
371 |
Q |
| |
|
|||||||||||||||| | | |||||||||||||||||||| |
|
|
| T |
22907131 |
agaaatttcaccaagccgcatatgcataagaggtccatatt |
22907171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University