View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11705_low_8 (Length: 432)
Name: NF11705_low_8
Description: NF11705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11705_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 416
Target Start/End: Complemental strand, 9998738 - 9998350
Alignment:
| Q |
17 |
catcaatgaattcagtgtagttatggggaatcattatctgcatcattacaagggtaagtattaaagatcatattttttatgaataaaatcaaataagact |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| |
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| T |
9998738 |
catcaatgaattcagtgtagttatggggaatcattatctgcatcattacaagggtaaatattaaagattatattttttatgaataa----------gact |
9998649 |
T |
|
| Q |
117 |
aatcaacaccaccaagatctagtgcaagtggttggttcgcagagtgtgtaagtattgtaaaccctaaaataccgagttcaattcctaataataaaaataa |
216 |
Q |
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||||||||||||| ||| ||||||||||||||||| |||| |||| |||||||||||||| |||||| ||||||||||||||||||||||| || || |
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| T |
9998648 |
aatcaacaccaccgggattcggtgcaagtggttggttcacagaatgtgcaagtattgtaaaccttaaaattccgagttcaattcctaataataataa-aa |
9998550 |
T |
|
| Q |
217 |
aatatacggctattcaaaagactagtaaaaaacatagtttaccatgtcaataccggcattcactccggcttcaattgaaaatgtgtagttagcatgagga |
316 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9998549 |
aatatacagctattcaaaagactagtaaaaaacatagtttaccatgtcaataccggcattcactccggcttcaattgaaaatgtgtagttagcatgagga |
9998450 |
T |
|
| Q |
317 |
ggtgaagttatcctgtcgattccctcccaatctgatatgacaaaaccctgcatgaaaacatagaattttaagcatatactaatatgatgattgataaaca |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9998449 |
ggtgaagttatcctgtcgattccctcccaatctgatatgacaaaaccctgcattaaaacatccaattttaagcatatactaatatgatgattgataaaca |
9998350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 218 - 414
Target Start/End: Complemental strand, 10004264 - 10004068
Alignment:
| Q |
218 |
atatacggctattcaaaagactagtaaaaaacatagtttaccatgtcaataccggcattcactccggcttcaattgaaaatgtgtagttagcatgaggag |
317 |
Q |
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| T |
10004264 |
atataaggctattcaaaagattagtaaaattcatagtttaccatgtcaataccggcattcactccggcttcaattgaaaatgtgtagttagcatgaggag |
10004165 |
T |
|
| Q |
318 |
gtgaagttatcctgtcgattccctcccaatctgatatgacaaaaccctgcatgaaaacatagaattttaagcatatactaatatgatgattgataaa |
414 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10004164 |
gtgaagttatcctgtcaattcccttccaatctgatatgacaaaaccctgcataaaaacatagaattttaagcatatactaatatgatgatcgataaa |
10004068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 249 - 416
Target Start/End: Complemental strand, 9991362 - 9991195
Alignment:
| Q |
249 |
catagtttaccatgtcaataccggcattcactccggcttcaattgaaaatgtgtagttagcatgaggaggtgaagttatcctgtcgattccctcccaatc |
348 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| | ||||| ||||||||||| || |||||||||||||| |||||||||||||| |
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| T |
9991362 |
catagtttaccatgtcaataccggcattcactccagcttcaattgaataggtgtaattagcatgaggcggggaagttatcctgtcaattccctcccaatc |
9991263 |
T |
|
| Q |
349 |
tgatatgacaaaaccctgcatgaaaacatagaattttaagcatatactaatatgatgattgataaaca |
416 |
Q |
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| T |
9991262 |
tgatatgacaaaaccctgcatgaaaacatataattttaggcgtatactaatatgatgattgataaaca |
9991195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 10004434 - 10004264
Alignment:
| Q |
17 |
catcaatgaattcagtgtagttatggggaatcattatctgcatcattacaagggtaagtattaaagatcatattttttatgaataaaatcaaataagact |
116 |
Q |
| |
|
|||| |||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10004434 |
catcgatgaattccgtgtagttaaagggaatcattatctgcatcattaaaagggtaagtattaaagatcatattttttatgaataaaatcaaataagact |
10004335 |
T |
|
| Q |
117 |
aatcaacaccaccaagatctagtgcaagtggttggttcgcagagtgtgtaagtattgtaaaccctaaaata |
187 |
Q |
| |
|
|||||||||||||| ||| ||| | || |||||||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
10004334 |
aatcaacaccaccaggatttagagaaattggttggttcccagagtgtgcaagtattgtaaaccctaaaata |
10004264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 249 - 399
Target Start/End: Complemental strand, 10012843 - 10012693
Alignment:
| Q |
249 |
catagtttaccatgtcaataccggcattcactccggcttcaattgaaaatgtgtagttagcatgaggaggtgaagttatcctgtcgattccctcccaatc |
348 |
Q |
| |
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|||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10012843 |
catagtttaccatgtcaagaccggcattcaccgaggcttcaattgaatatgtgtagttagcatgaggaggtgaagttatcctgtcaattccctcccaatc |
10012744 |
T |
|
| Q |
349 |
tgatatgacaaaaccctgcatgaaaacatagaattttaagcatatactaat |
399 |
Q |
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||||||| |||||||| | ||||||| |||||||||||||||||||||| |
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| T |
10012743 |
tgatatggtaaaaccctaaaggaaaacaaagaattttaagcatatactaat |
10012693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 368
Target Start/End: Complemental strand, 35992782 - 35992716
Alignment:
| Q |
302 |
tagttagcatgaggaggtgaagttatcctgtcgattccctcccaatctgatatgacaaaaccctgca |
368 |
Q |
| |
|
||||||||||||||||| || || || | ||| || |||| |||||||||||||||||||||||||| |
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| T |
35992782 |
tagttagcatgaggaggagaggtaattcggtcaataccctgccaatctgatatgacaaaaccctgca |
35992716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 35461929 - 35461880
Alignment:
| Q |
140 |
gcaagtggttggttcgcagagtgtgtaagtattgtaaaccctaaaatacc |
189 |
Q |
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| T |
35461929 |
gcaagtggttggtgcgcagtgtgtgtgagtgttgtaaaccctaaaatacc |
35461880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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