View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11706_high_1 (Length: 822)

Name: NF11706_high_1
Description: NF11706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11706_high_1
NF11706_high_1
[»] chr4 (9 HSPs)
chr4 (18-364)||(15581942-15582288)
chr4 (28-801)||(15526610-15527380)
chr4 (338-788)||(36590754-36591204)
chr4 (52-132)||(18083069-18083149)
chr4 (52-132)||(36617532-36617612)
chr4 (78-132)||(18359232-18359286)
chr4 (78-132)||(36603642-36603696)
chr4 (73-164)||(36643605-36643696)
chr4 (685-766)||(36636308-36636389)
[»] chr3 (2 HSPs)
chr3 (73-147)||(25596933-25597007)
chr3 (668-730)||(13460215-13460277)
[»] chr6 (1 HSPs)
chr6 (18-132)||(33844278-33844392)
[»] chr5 (2 HSPs)
chr5 (52-110)||(17667110-17667168)
chr5 (670-744)||(28091695-28091769)
[»] chr1 (1 HSPs)
chr1 (76-158)||(42602853-42602935)
[»] chr7 (1 HSPs)
chr7 (52-109)||(14677181-14677238)


Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-179; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 15582288 - 15581942
Alignment:
Q  18 agtgacttacctgattgcattctcatttacattatgtcttttttaaacactatagatgccgttcgaacttgcgttttgtctaaaagatggaagcatattt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15582288 agtgacttacctgattgcattctcatttacattatgtcttttttaaacactatagacgccgttcgaacttgcgttttgtctaaaagatggaagcatattt 15582189  T
Q  118 ggaaacatattcctatccttacattgcattactcagacttttcaactttgaagtgtttccacaacttcatgtctagggttttgtctcttcgtgacaactc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||| |||||    
T  15582188 ggaaacatattcctatccttacattgcattactcagacttttcaactttgaagtgtttccacaaatttgtgtctagggttttgtctcttcgtgataactc 15582089  T
Q  218 ggtactattgcagtcgattgattttgatggtaatggtggttgtattcagtctagcctacttaaaagggtttcaaattatgttttatctcacaatgcccaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  15582088 ggtactattgcagtcgattgattttgatggtaatggtggttgtattcagtctagcctacttaaaaggttttcgaattatgttttatctcacaatgcccaa 15581989  T
Q  318 ctcaatcgactaggatttgatgttaaaggcgatatatgtcatatctt 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15581988 ctcaatcgactaggatttgatgttaaaggcgatatatgtcatatctt 15581942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 28 - 801
Target Start/End: Complemental strand, 15527380 - 15526610
Alignment:
Q  28 ctgattgcattctcatttacattatgtcttttttaaacactatagatgccgttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatat 127  Q
    ||||||||||| ||||| ||||| |||| ||||| | ||||| ||| || |||||||||||| || |||| ||||||||| |||||||||||||| ||||    
T  15527380 ctgattgcattatcattcacattttgtcatttttgagcactaaagacgctgttcgaacttgcattctgtccaaaagatgggagcatatttggaaatatat 15527281  T
Q  128 tcctatccttacattgcattactcagacttttcaactttgaagtgtttccacaacttcatgtctagggttttgtctcttcgtgacaactcggtactattg 227  Q
    | | |  |||| | | |||| |||| ||||||| | ||| ||| ||||  | || ||| |||||||  || ||||||||||| | | |    |  |||||    
T  15527280 ttccaatcttagactacattgctcaaacttttccagtttaaagagttttgataaattcgtgtctagaattctgtctcttcgtcatagcaaaattgtattg 15527181  T
Q  228 cagtcgattgattttgatggtaatggtggttgtattcagtctagcctacttaaaagggtttcaaattatgttttatctcacaatgcccaactcaatcgac 327  Q
    ||  |  || |||||||  |||   ||||| ||||| ||| | ||||||||||||  ||  |||||||||||||||| |||| |||| | ||| |||||     
T  15527180 caaactgtttattttgaacgta---gtggtagtattgagtttggcctacttaaaaaagtagcaaattatgttttatcgcacagtgccaagctcgatcgat 15527084  T
Q  328 taggatttgatgttaaaggcgatatatgtcatatcttgccttgcatttcttcgtctcaaactttaacatcacttaggttgtccttttcccctaaaggtcg 427  Q
    ||| | ||||||| ||||||||||||||||||||| | |||||||||||||||||||| || ||||||||||||||| | ||| |||| |||||||||||    
T  15527083 tagaaattgatgtgaaaggcgatatatgtcatatcctaccttgcatttcttcgtctcagacgttaacatcacttaggctatccgtttcgcctaaaggtcg 15526984  T
Q  428 ttataattatgggagaacgttgtttcctaaatcactaaatttaccatcattaacctacttgcatctcgaaaattttgtcatttgtgctagtgacaatggc 527  Q
    |||||||||| ||||||||||||||||||| |||||| ||||||||   |||||||   | ||||| | |||||||||| |||| || | |||   |||     
T  15526983 ttataattattggagaacgttgtttcctaactcactagatttaccagtgttaacctgtctacatctaggaaattttgtcttttgcgccactgatggtggt 15526884  T
Q  528 cgaatcgagcccttttcagcctttaacaggttgaatgatttgatcattgataattgcacggtcaaagatgcaaaaatcttgtgcatatcaagtgagacgc 627  Q
    ||||| || ||||||||||||||||| || |||| |||||||||||||||||||||  |||| || | |||||| ||||||||||| | |||  |||| |    
T  15526883 cgaattgatcccttttcagcctttaatagattgagtgatttgatcattgataattgttcggtgaagggtgcaaatatcttgtgcatgttaagccagacac 15526784  T
Q  628 tagtcactttaaccatgcgtaatcattcttttaacttctacaaaatcgagctatcttctccaaatctttgtacatttgcttttacgggtactccttatca 727  Q
    |||| |  ||||| || ||||||||||| ||  ||   ||| |||||||||||||| ||||||  ||| |||||||||||||||||||||||||||||||    
T  15526783 tagttagcttaacgatacgtaatcattcattccacaattaccaaatcgagctatctgctccaagccttcgtacatttgcttttacgggtactccttatca 15526684  T
Q  728 gatactctgtgggagcagtctttcttctgtggaacaagtgatcatcgatgcggaaatgttggcaaattactcgg 801  Q
    || |||   ||| | || ||||||||||||  || |||| || || || |||||||||||||||||||||||||    
T  15526683 gacacttcttggaaccaatctttcttctgtcaaaaaagtaattattgacgcggaaatgttggcaaattactcgg 15526610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 338 - 788
Target Start/End: Complemental strand, 36591204 - 36590754
Alignment:
Q  338 tgttaaaggcgatatatgtcatatcttgccttgcatttcttcgtctcaaactttaacatcacttaggttgtccttttcccctaaaggtcgttataattat 437  Q
    ||||||||| ||||| ||||||||  |||||||  ||||||||| ||  |||||||| || |||| | | ||  |||| || |||||  |  ||||||||    
T  36591204 tgttaaaggggatatttgtcatattctgccttgtgtttcttcgtgtcggactttaacgtctcttaagctttctgtttcgcccaaagggaggcataattat 36591105  T
Q  438 gggagaacgttgtttcctaaatcactaaatttaccatcattaacctacttgcatctcgaaaattttgtcatttgtgctagtgacaatggccgaatcgagc 537  Q
    ||||||||||||||||| |||||| |  |||| ||| | ||||||   |||||||| |  ||||| ||| ||||||||||||| || |||||||  ||||    
T  36591104 gggagaacgttgtttccaaaatcattggatttgccagcgttaaccagtttgcatctagggaatttcgtcttttgtgctagtgataaaggccgaactgagc 36591005  T
Q  538 ccttttcagcctttaacaggttgaatgatttgatcattgataattgcacggtcaaagatgcaaaaatcttgtgcatatcaagtgagacgctagtcacttt 637  Q
    ||||||| |  ||||||| |||||||  |||| ||||||| ||||| ||||| || |||||  | ||  | ||||||| ||||||||| || |||| |||    
T  36591004 ccttttcgggttttaacaagttgaatagtttggtcattgacaattgtacggtgaaggatgcgcagattctttgcatattaagtgagacacttgtcaattt 36590905  T
Q  638 aaccatgcgtaatcattcttttaacttctacaaaatcgagctatcttctccaaatctttgtacatttgcttttacgggtactccttatcagatactctgt 737  Q
     || |||||||||||||||| | || | ||||||||||| |||||  |||||| |||| | || ||||| ||||| || || |||||||||| ||| |||    
T  36590904 gactatgcgtaatcattcttctgacgtttacaaaatcgaactatccgctccaagtcttagcacgtttgcgtttaccggaaccccttatcagaaactttgt 36590805  T
Q  738 gggagcagtctttcttctgtggaacaagtgatcatcgatgcggaaatgttg 788  Q
    ||||||| |||||| || ||  |||| ||||  || ||||| |||||||||    
T  36590804 gggagcaatctttcctcggttaaacaggtgaatattgatgcagaaatgttg 36590754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 18083069 - 18083149
Alignment:
Q  52 tgtcttttttaaacactatagatgccgttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatattccta 132  Q
    |||| ||||||||||| | |||||  |||||||||||||||||||||| |||||||||  |||| ||||||||||||||||    
T  18083069 tgtcatttttaaacaccaaagatggtgttcgaacttgcgttttgtctagaagatggaaagatatatggaaacatattccta 18083149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 36617612 - 36617532
Alignment:
Q  52 tgtcttttttaaacactatagatgccgttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatattccta 132  Q
    |||| ||||||||||| | |||||  |||||||||||||||||||||| |||||||||  |||| ||||||||||||||||    
T  36617612 tgtcatttttaaacaccaaagatggtgttcgaacttgcgttttgtctagaagatggaaagatatatggaaacatattccta 36617532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 18359232 - 18359286
Alignment:
Q  78 gttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatattccta 132  Q
    ||||||||| || ||||||| ||||| ||||||||| ||||||||||||||||||    
T  18359232 gttcgaactggcattttgtccaaaaggtggaagcatctttggaaacatattccta 18359286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 36603696 - 36603642
Alignment:
Q  78 gttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatattccta 132  Q
    ||||||||| || ||||||| ||||| ||||||||| ||||||||||||||||||    
T  36603696 gttcgaactggcattttgtccaaaaggtggaagcatctttggaaacatattccta 36603642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 36643696 - 36643605
Alignment:
Q  73 atgccgttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatattcctatccttacattgcattactcagacttttcaact 164  Q
    |||| |||| ||| || |||||||| | ||||||||||||| |||||  || |||||||| ||||| ||| |||| |||| |||||||||||    
T  36643696 atgctgttcaaacctgtgttttgtccacaagatggaagcatctttgggcacgtattcctacccttatattacattcctcaaacttttcaact 36643605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 766
Target Start/End: Complemental strand, 36636389 - 36636308
Alignment:
Q  685 ctccaaatctttgtacatttgcttttacgggtactccttatcagatactctgtgggagcagtctttcttctgtggaacaagt 766  Q
    |||||| ||||||||| ||| ||||||| |||||||||  ||||| | | ||||||||  |||||||||||||  |||||||    
T  36636389 ctccaagtctttgtacctttacttttactggtactcctgttcagaaaatatgtgggagtggtctttcttctgtcaaacaagt 36636308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 25596933 - 25597007
Alignment:
Q  73 atgccgttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatattcctatccttacattgcatt 147  Q
    ||||||||| ||||||| |||||||||  ||||||||| || |||||||||||||||| | ||||| ||||||||    
T  25596933 atgccgttcaaacttgcattttgtctacgagatggaagaatctttggaaacatattcccacccttatattgcatt 25597007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 668 - 730
Target Start/End: Original strand, 13460215 - 13460277
Alignment:
Q  668 caaaatcgagctatcttctccaaatctttgtacatttgcttttacgggtactccttatcagat 730  Q
    |||||| ||||||| | |||||||||| ||| ||||| |||||| ||||||||||| ||||||    
T  13460215 caaaattgagctatttactccaaatctgtgtgcatttacttttatgggtactccttttcagat 13460277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 33844392 - 33844278
Alignment:
Q  18 agtgacttacctgattgcattctcatttacattatgtcttttttaaacactatagatgccgttcgaacttgcgttttgtctaaaagatggaagcatattt 117  Q
    ||||||||||| || |||||||| ||||||||| |||| ||||| || ||   | | ||||||| ||||||| ||||||| |  |||||||| ||| | |    
T  33844392 agtgacttacccgactgcattcttatttacattttgtcatttttgaaaaccgaaaacgccgttcaaacttgcattttgtccaccagatggaaacatctct 33844293  T
Q  118 ggaaacatattccta 132  Q
    |||||| ||||||||    
T  33844292 ggaaacgtattccta 33844278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 17667168 - 17667110
Alignment:
Q  52 tgtcttttttaaacactatagatgccgttcgaacttgcgttttgtctaaaagatggaag 110  Q
    |||| ||||||||||| | ||| |  |||||||||||||||||||||| ||||||||||    
T  17667168 tgtcatttttaaacaccaaagaagttgttcgaacttgcgttttgtctacaagatggaag 17667110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 670 - 744
Target Start/End: Original strand, 28091695 - 28091769
Alignment:
Q  670 aaatcgagctatcttctccaaatctttgtacatttgcttttacgggtactccttatcagatactctgtgggagca 744  Q
    |||||||| ||||| |||||||||||||||| ||| ||||||  ||| |||||| ||| | ||||| ||||||||    
T  28091695 aaatcgagttatctactccaaatctttgtacctttacttttattggttctccttttcacaaactctatgggagca 28091769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 42602935 - 42602853
Alignment:
Q  76 ccgttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatattcctatccttacattgcattactcagacttt 158  Q
    |||||| ||||||| | ||||| ||||||||||||| ||| ||||||| ||||||||  |||| |||| ||| |||| |||||    
T  42602935 ccgttcaaacttgcatcttgtccaaaagatggaagcttatgtggaaacgtattcctactcttatattggattcctcaaacttt 42602853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 14677181 - 14677238
Alignment:
Q  52 tgtcttttttaaacactatagatgccgttcgaacttgcgttttgtctaaaagatggaa 109  Q
    |||| ||||||||||| | ||| |  |||||||||||||||||||||| |||||||||    
T  14677181 tgtcatttttaaacaccaaagaagttgttcgaacttgcgttttgtctacaagatggaa 14677238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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