View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11706_high_5 (Length: 315)
Name: NF11706_high_5
Description: NF11706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11706_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 30897366 - 30897105
Alignment:
| Q |
16 |
aaaaaggagacaatatcgttctatatggttatgcattaccccgtgcttgcccgacgttacataactttggcctagatcatctgtcgaaccccatgttata |
115 |
Q |
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| T |
30897366 |
aaaaaggagacaatatcgttctatatggttatgcattaccccgtgcttgccggacgtcacataactttggcctagatcatctgtcgaaccccatgttata |
30897267 |
T |
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| Q |
116 |
agctttcctgattctgattaagaaagaaaatatgagcaatgatgaatcattttctgttttcaataataaaatgtgaaaagaaactgcttgaagagaaaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30897266 |
agctttcctgattctgattaagaaagaaaatatgagcaatgatgaatcattttctgttttcaataataaaatgtgaaaagaaactgcttgaagagaaaga |
30897167 |
T |
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| Q |
216 |
gatccaaaagagatagagtgatggaaagatatgcattgccataacttcctctaaagaaaaaa |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30897166 |
gatccaaaagagatagagtgatggaaagatatgcattgccataacttcctctaaagaaaaaa |
30897105 |
T |
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