View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11706_high_7 (Length: 278)

Name: NF11706_high_7
Description: NF11706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11706_high_7
NF11706_high_7
[»] chr1 (3 HSPs)
chr1 (7-263)||(48673172-48673429)
chr1 (216-251)||(18470188-18470223)
chr1 (216-261)||(16026107-16026152)
[»] chr4 (5 HSPs)
chr4 (198-252)||(53769886-53769940)
chr4 (199-239)||(22889568-22889608)
chr4 (199-239)||(22941232-22941272)
chr4 (216-251)||(48194449-48194484)
chr4 (214-252)||(31095103-31095141)
[»] chr7 (1 HSPs)
chr7 (216-260)||(1532196-1532240)
[»] chr6 (1 HSPs)
chr6 (212-252)||(10544282-10544322)
[»] chr3 (3 HSPs)
chr3 (216-251)||(51265950-51265985)
chr3 (198-252)||(9343215-9343269)
chr3 (197-242)||(38457015-38457060)
[»] chr2 (1 HSPs)
chr2 (147-190)||(691066-691109)
[»] scaffold0591 (1 HSPs)
scaffold0591 (217-261)||(3938-3982)
[»] chr8 (1 HSPs)
chr8 (217-245)||(37064522-37064550)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 48673172 - 48673429
Alignment:
Q  7 attactagctccatgtccacgaggatcttgattagatgaggatgaacgcctcattcatgccggtgaccctatatctgaaaccttaaaaaatataaaatga 106  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48673172 attactagctccatgtccatgaggatcttgattagatgaggatgaacgcctcattcctgccggtgaccctatatctgaaaccttaaaaaatataaaatga 48673271  T
Q  107 tctcaaacagaaagtcagaaatactaatgcgaaagttcgataattaagaaaactttgctataatggaaagctggtaatataaaatatagtttaaattaca 206  Q
    |||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  48673272 tctcaaacagaaagtcagaaatactaatacaaaagttcggtaattaagaaaactctgctataatggaaagttggtaatataaaatatagtttaaattaca 48673371  T
Q  207 ttagtgatcc-tttaagttatttaattataataagttgatcatttaaattattttcat 263  Q
    |||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||    
T  48673372 ttagtgatccttttaagttatttaattataacaagttggtcatttaaattattttcat 48673429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 18470188 - 18470223
Alignment:
Q  216 ctttaagttatttaattataataagttgatcattta 251  Q
    ||||||||||||||||| ||||||||||||||||||    
T  18470188 ctttaagttatttaattgtaataagttgatcattta 18470223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 16026107 - 16026152
Alignment:
Q  216 ctttaagttatttaattataataagttgatcatttaaattattttc 261  Q
    ||||||||||||||||| ||||||||| |||||||| ||| |||||    
T  16026107 ctttaagttatttaattgtaataagttaatcatttacatttttttc 16026152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 53769940 - 53769886
Alignment:
Q  198 taaattacattagtgatcctttaagttatttaattataataagttgatcatttaa 252  Q
    ||||||| || || |||||||||| |||||||||||||||||||||||| |||||    
T  53769940 taaattatatgagagatcctttaaattatttaattataataagttgatcctttaa 53769886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 22889568 - 22889608
Alignment:
Q  199 aaattacattagtgatcctttaagttatttaattataataa 239  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  22889568 aaattacattagagatcatttaagttatttaattataataa 22889608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 22941232 - 22941272
Alignment:
Q  199 aaattacattagtgatcctttaagttatttaattataataa 239  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  22941232 aaattacattagagatcatttaagttatttaattataataa 22941272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 48194484 - 48194449
Alignment:
Q  216 ctttaagttatttaattataataagttgatcattta 251  Q
    ||||||||||||||||| ||||||||||||||||||    
T  48194484 ctttaagttatttaattgtaataagttgatcattta 48194449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 31095103 - 31095141
Alignment:
Q  214 tcctttaagttatttaattataataagttgatcatttaa 252  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  31095103 tcctttaagttatttaattataacaagttaatcatttaa 31095141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 1532196 - 1532240
Alignment:
Q  216 ctttaagttatttaattataataagttgatcatttaaattatttt 260  Q
    ||||||||||||||||| |||||||||||||||||| ||| ||||    
T  1532196 ctttaagttatttaattgtaataagttgatcatttacattttttt 1532240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 10544322 - 10544282
Alignment:
Q  212 gatcctttaagttatttaattataataagttgatcatttaa 252  Q
    ||||| |||||||| ||||||||||||||||||||||||||    
T  10544322 gatccattaagttaattaattataataagttgatcatttaa 10544282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 51265985 - 51265950
Alignment:
Q  216 ctttaagttatttaattataataagttgatcattta 251  Q
    ||||||||||||||||| ||||||||||||||||||    
T  51265985 ctttaagttatttaattgtaataagttgatcattta 51265950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 9343269 - 9343215
Alignment:
Q  198 taaattacattagtgatcctttaagttatttaattataataagttgatcatttaa 252  Q
    ||||||||||  | ||| |||||||||||||||||||||||||||| || |||||    
T  9343269 taaattacatcggagattctttaagttatttaattataataagttggtcctttaa 9343215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 38457015 - 38457060
Alignment:
Q  197 ttaaattacattagtgatcctttaagttatttaattataataagtt 242  Q
    |||||||||  | |||||| ||||||||||||||||||||||||||    
T  38457015 ttaaattacggttgtgatcatttaagttatttaattataataagtt 38457060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 691066 - 691109
Alignment:
Q  147 taattaagaaaactttgctataatggaaagctggtaatataaaa 190  Q
    |||||||||||||| ||||||||||||||| || ||||||||||    
T  691066 taattaagaaaactatgctataatggaaagatgataatataaaa 691109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 3982 - 3938
Alignment:
Q  217 tttaagttatttaattataataagttgatcatttaaattattttc 261  Q
    |||| ||||||||||| |||||| |||||||||||| ||||||||    
T  3982 tttatgttatttaattgtaataaattgatcatttaagttattttc 3938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 245
Target Start/End: Original strand, 37064522 - 37064550
Alignment:
Q  217 tttaagttatttaattataataagttgat 245  Q
    |||||||||||||||||||||||||||||    
T  37064522 tttaagttatttaattataataagttgat 37064550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University