View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11706_low_10 (Length: 249)
Name: NF11706_low_10
Description: NF11706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11706_low_10 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 895348 - 895114
Alignment:
| Q |
15 |
atgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcatttccaaaacttaccttgtttctttaatcttcagtatatttt |
114 |
Q |
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| T |
895348 |
atgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcatttccaaaactaaccttgtttctttaatcttcagtatatttt |
895249 |
T |
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| Q |
115 |
caacagatgcatatgaagttgctaaacaattcaacttgtcttcttaccttttctatgcctcgggagctgttccaacatcattttatctcactcttccgaa |
214 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
895248 |
caacagatgcatatgaagttgccaaacaatttaacttgtcttcttaccttttctatgcctcaggagctgttccaacatcattttatctcactcttctgaa |
895149 |
T |
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| Q |
215 |
tctcgacgactctatttcctcggaaatagagttct |
249 |
Q |
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| T |
895148 |
tctcgacgactctatttcctcggaaatagagttct |
895114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 905295 - 905515
Alignment:
| Q |
15 |
atgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcatttccaaaacttaccttgtttctttaatcttcagtatatttt |
114 |
Q |
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| T |
905295 |
atgaaactcattgtgaaacattctattccatttctacaagaagaagtaaaatcactcatttccaaaactaaccttgtttctttaatctttggtctattct |
905394 |
T |
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| Q |
115 |
caacagatgcatatgaagttgctaaacaattcaacttgtcttcttaccttttctatgcctcgggagctgttccaacatcattttatctcactcttccgaa |
214 |
Q |
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| T |
905395 |
caaccgatgcacatgaagttgctaaacaattcaatttatcttcttaccttttctatgcctcgggtgctctttcattgtcattctttctcactcttccgaa |
905494 |
T |
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| Q |
215 |
tctcgacgactctatttcctc |
235 |
Q |
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| T |
905495 |
tctcgacgactctgtttcctc |
905515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 8295293 - 8295121
Alignment:
| Q |
13 |
agatgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcatttccaaaacttaccttgtttctttaatcttcagtatatt |
112 |
Q |
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| T |
8295293 |
agatgaaactcatagtgaaacactctattccatttctttatgaagaagtaaaatcactcctttcaaaaactcgcctagttgctttagttttcagcatgtt |
8295194 |
T |
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| Q |
113 |
ttcaacagatgcatatgaagttgctaaacaattcaacttgtcttcttaccttttctatgcctcgggagctgtt |
185 |
Q |
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| T |
8295193 |
ttcaaccgatgcacatgatgttgcgaaacatttcaaccttttatcataccttttcttttcctcaggagctgtt |
8295121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 33256464 - 33256634
Alignment:
| Q |
15 |
atgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcatttccaaaacttaccttgtttctttaatcttcagtatatttt |
114 |
Q |
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||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||| |||| |||||| |||||||| ||||| | | ||| || |||| |
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| T |
33256464 |
atgaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatcacttctttcaaaaactaaccttgttgctttagtttgcagcatgtttt |
33256563 |
T |
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| Q |
115 |
caacagatgcatatgaagttgctaaacaattcaacttgtcttcttaccttttctatgcctcgggagctgtt |
185 |
Q |
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| T |
33256564 |
caaccgatgcacacgatgtagctaaacatttcaaccttttgtcttaccttttcttttcttcaggagctgtt |
33256634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 582 - 752
Alignment:
| Q |
15 |
atgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcatttccaaaacttaccttgtttctttaatcttcagtatatttt |
114 |
Q |
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||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||| |||| |||||| |||||||| ||||| | | ||| || |||| |
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| T |
582 |
atgaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatcacttctttcaaaaactaaccttgttgctttagtttgcagcatgtttt |
681 |
T |
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| Q |
115 |
caacagatgcatatgaagttgctaaacaattcaacttgtcttcttaccttttctatgcctcgggagctgtt |
185 |
Q |
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|||| |||||| | || || |||||||| |||||| | | ||||||||||||| | | || ||||||||| |
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| T |
682 |
caaccgatgcacacgatgtagctaaacatttcaaccttttgtcttaccttttcttttcttcaggagctgtt |
752 |
T |
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