View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11706_low_12 (Length: 230)
Name: NF11706_low_12
Description: NF11706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11706_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 34789167 - 34788971
Alignment:
| Q |
14 |
gagcagagatgttgcacagaaacatatatcttacattcaagtcatgcactatccactattctatctatcaaactgttgatacagtggtcaacagacctta |
113 |
Q |
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| T |
34789167 |
gagcagagatgttgcacagaaacatatatcttacattcaagtcatgcactatccactattctatctatcaaactgttgatacagtggtcaacagacctta |
34789068 |
T |
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| Q |
114 |
ataacatgcaatttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatgagcgctaagccacatatcaag |
210 |
Q |
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| T |
34789067 |
ataacatgcaatttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatgagcgctaagccacatatcaag |
34788971 |
T |
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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 2289977 - 2290066
Alignment:
| Q |
124 |
atttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcg---gatgagcgctaagccacatatcaag |
210 |
Q |
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| T |
2289977 |
atttctttagaaaatttattactaacatgtgtggagcgaagttcaacagagagggcaactaggatgatgagcactaagccacatatcaag |
2290066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 2289873 - 2289952
Alignment:
| Q |
79 |
tatcaaactgttgatacagtggtcaacagaccttaataacatgc-aatttctttagaaaattaattactaatatgtgtgga |
158 |
Q |
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| T |
2289873 |
tatcaaactgttgataga-tggtcaacaaaacttgataatatgttaatttctttagaaaattaattactaacatgtgtgga |
2289952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 2289812 - 2289849
Alignment:
| Q |
57 |
atgcactatccactattctatctatcaaactgttgata |
94 |
Q |
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| T |
2289812 |
atgcactatccactattctatccatcaaactgttgata |
2289849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 9564734 - 9564816
Alignment:
| Q |
123 |
aatttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatgagcgctaagccacata |
205 |
Q |
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| T |
9564734 |
aatttctttagaaaatttatgactaacatgtatggagggaagctctatagagcagtcaactaggatgaacactaagccacata |
9564816 |
T |
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