View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11706_low_2 (Length: 738)

Name: NF11706_low_2
Description: NF11706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11706_low_2
NF11706_low_2
[»] chr4 (2 HSPs)
chr4 (257-730)||(11321255-11321726)
chr4 (19-131)||(11321019-11321131)
[»] chr3 (6 HSPs)
chr3 (271-515)||(9720270-9720514)
chr3 (280-389)||(2793889-2794002)
chr3 (83-124)||(9720133-9720174)
chr3 (294-381)||(7604173-7604260)
chr3 (315-373)||(27676919-27676977)
chr3 (72-117)||(27676308-27676353)
[»] chr6 (2 HSPs)
chr6 (72-124)||(23906895-23906947)
chr6 (272-357)||(23907069-23907154)
[»] chr2 (1 HSPs)
chr2 (316-415)||(9323685-9323784)
[»] chr8 (1 HSPs)
chr8 (314-407)||(35399081-35399174)
[»] chr1 (1 HSPs)
chr1 (68-103)||(43741855-43741890)
[»] chr5 (1 HSPs)
chr5 (289-378)||(1063211-1063300)


Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 257 - 730
Target Start/End: Original strand, 11321255 - 11321726
Alignment:
Q  257 gcttaaacttaaaccgactcaacgtctcaaaacttaaatagaaaacaaccaagtctgcaaaatactcaaaacatagatgctacaagcctacatcgcatca 356  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||    
T  11321255 gcttaaacttaaactgactcaaagtctcaaaacttaaatagaaaacaaccaagtctacaaaatactcaaaacctagatgctacaagcctacatcacatca 11321354  T
Q  357 cgaacgcttcaattataaggcagagcaaaatcgtgaaatctcttaaacatatacgatttcaagcagattttttgtagtttaggattctactaagcattca 456  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||| |    
T  11321355 cgaacgcttcaattataaggcagagcaaaatcgtgaaatctcttaaacatatacgattttgagcagattttgtgtagtttaggattctactaagcattta 11321454  T
Q  457 aatcggtaaggcagaacaaaatc--------gtagaattttaggattctaatcgggattttaacaactatgaacataatacttttcaacaaaacatatta 548  Q
    ||||||||||||||| |||||||        ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11321455 aatcggtaaggcagagcaaaatcgcaaaatggtagaattttaggattcaattcgggattttaacaactatgaacataatacttttcaac-aaacatatta 11321553  T
Q  549 attccaactgaactttctgtgcacattatagagaagaaagaatccaacatctatatcacggttttatcaattgtatcacacaattggtcaataccaaaac 648  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| || ||||||||||    
T  11321554 attccaactgaactttctgtgcacattatagagaagaaagaatccaacatctatatcacggttttatcaattgtattgcacaattgatcgataccaaaac 11321653  T
Q  649 tggttacaggtacgatagccgctgagagggc-gagtttggccatttcttcgggaaagactctcttaaccgcagccttcatctc 730  Q
    |||||||||||            |||||||| |||||| |||||||||||||||||||||| |||||| ||||| ||||||||    
T  11321654 tggttacaggt----------tggagagggctgagtttagccatttcttcgggaaagactcccttaacggcagcattcatctc 11321726  T

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Target: chr4; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 11321019 - 11321131
Alignment:
Q  19 agaatccaaaggtgatagcaagatcgtaagaacgcaaatctaacttcagaactaaaattgaaggattctactcaaataatattaaatatatactataaac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11321019 agaatccaaaggtgatagcaagatcgtaagaacgcaaatctaacttcagaactaaaattgaaggattctactcaaataatattaaatatatactataaat 11321118  T
Q  119 tgcatagattatt 131  Q
    |||||||||||||    
T  11321119 tgcatagattatt 11321131  T

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Target: chr3 (Bit Score: 61; Significance: 8e-26; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 271 - 515
Target Start/End: Original strand, 9720270 - 9720514
Alignment:
Q  271 cgactcaacgtctcaaaacttaaatagaaaacaaccaagtctgcaaaatactcaaaacatagatgctacaagcctacatcgcatcacgaacgcttcaatt 370  Q
    |||||||| |||||||| |||||||| | ||||||||||||    ||||||||| ||| ||||||||||||| ||||||| |||||  |||    |||||    
T  9720270 cgactcaaagtctcaaatcttaaataaagaacaaccaagtccatgaaatactcagaacctagatgctacaagactacatcacatcataaacatgccaatt 9720369  T
Q  371 ataaggcagagcaaaatcgtgaaatctcttaaacatatacgatttcaagcagattttttgtagtttaggattctactaagcattcaaatcggtaaggcag 470  Q
    |||| ||||||  |||||   ||||   | ||||||| | || ||||| | |||||||  |||||||||||||||||||   |||| |||||||||||||    
T  9720370 ataaagcagagtgaaatcacaaaatagatcaaacatagatgacttcaaacggatttttcatagtttaggattctactaaattttcagatcggtaaggcag 9720469  T
Q  471 aacaaaatcgtagaattttaggattctaatcgggattttaacaac 515  Q
    |  |||||||||| |||| || ||||| ||||||||| |||||||    
T  9720470 agaaaaatcgtaggatttcagtattctgatcgggattgtaacaac 9720514  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 280 - 389
Target Start/End: Complemental strand, 2794002 - 2793889
Alignment:
Q  280 gtctcaaaacttaaatagaaaacaaccaagtctgcaaaatactcaaaacatagatgctacaagcc-----tacatcgcatcacgaacgcttcaattataa 374  Q
    |||||||| |||||||| ||||||||||| ||  |||||||| |||||| |||||||||||| ||     ||||| |||||||||||||  |||||||||    
T  2794002 gtctcaaatcttaaatataaaacaaccaattccacaaaatacgcaaaacctagatgctacaaaccaatattacat-gcatcacgaacgcgccaattataa 2793904  T
Q  375 ggcagagcaaaatcg 389  Q
    |||||| ||||||||    
T  2793903 ggcagaacaaaatcg 2793889  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 9720133 - 9720174
Alignment:
Q  83 attctactcaaataatattaaatatatactataaactgcata 124  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  9720133 attctactcaaataatattaaatatatactataaagtgcata 9720174  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 294 - 381
Target Start/End: Complemental strand, 7604260 - 7604173
Alignment:
Q  294 atagaaaacaaccaagtctgcaaaatactcaaaacatagatgctacaagcctacatcgcatcacgaacgcttcaattataaggcagag 381  Q
    ||||| |||||||||||   ||||||||||||||  ||||||||||||| ||||||| | ||| |||| | ||||||||||| |||||    
T  7604260 atagagaacaaccaagtgcacaaaatactcaaaatttagatgctacaagactacatcacttcatgaacacgtcaattataagacagag 7604173  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 27676919 - 27676977
Alignment:
Q  315 aaaatactcaaaacatagatgctacaagcctacatcgcatcacgaacgcttcaattata 373  Q
    |||||||||||||  ||||| ||||||||||||||| ||||||||||||  ||||||||    
T  27676919 aaaatactcaaaatctagatcctacaagcctacatcacatcacgaacgcgccaattata 27676977  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 27676308 - 27676353
Alignment:
Q  72 aaaattgaaggattctactcaaataatattaaatatatactataaa 117  Q
    ||||| ||||| || || ||||||||||||||||||||||||||||    
T  27676308 aaaatcgaaggtttttaatcaaataatattaaatatatactataaa 27676353  T

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Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 23906895 - 23906947
Alignment:
Q  72 aaaattgaaggattctactcaaataatattaaatatatactataaactgcata 124  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  23906895 aaaattgaaggattttactcaaataatattaaatatatactataaagtgcata 23906947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 23907069 - 23907154
Alignment:
Q  272 gactcaacgtctcaaaacttaaatagaaaacaaccaagtctgcaaaatactcaaaacatagatgctacaagcctacatcgcatcac 357  Q
    ||||||| ||| |||| || ||||| |||| ||||||| |  || |||| ||||||| |||||||||||||| |||||||||||||    
T  23907069 gactcaaagtcccaaatctcaaatataaaataaccaagcccacataatattcaaaacctagatgctacaagcatacatcgcatcac 23907154  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 316 - 415
Target Start/End: Complemental strand, 9323784 - 9323685
Alignment:
Q  316 aaatactcaaaacatagatgctacaagcctacatcgcatcacgaacgcttcaattataaggcagagcaaaatcgtgaaatctcttaaacatatacgattt 415  Q
    |||||||||||| ||||||| |||||||| ||||| |||||| || ||  ||||||||||||||||||||||||  | ||| |||||| ||| |||||||    
T  9323784 aaatactcaaaatatagatgttacaagccaacatcacatcacaaatgcgccaattataaggcagagcaaaatcgcaatatcacttaaatataaacgattt 9323685  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 314 - 407
Target Start/End: Complemental strand, 35399174 - 35399081
Alignment:
Q  314 caaaatactcaaaacatagatgctacaagcctacatcgcatcacgaacgcttcaattataaggcagagcaaaatcgtgaaatctcttaaacata 407  Q
    ||||||||||||||| |||||||||||| |||| | | ||| |||||||   |||||||||||||||||||||| |  ||||| ||||||||||    
T  35399174 caaaatactcaaaacctagatgctacaaacctaaaacacattacgaacgtggcaattataaggcagagcaaaattgcaaaatcacttaaacata 35399081  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 43741855 - 43741890
Alignment:
Q  68 aactaaaattgaaggattctactcaaataatattaa 103  Q
    |||||| |||||||||||||||||||||||||||||    
T  43741855 aactaagattgaaggattctactcaaataatattaa 43741890  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 378
Target Start/End: Complemental strand, 1063300 - 1063211
Alignment:
Q  289 cttaaatagaaaacaaccaagtctgcaaaatactcaaaacatagatgctacaagcctacatcgcatcacgaacgcttcaattataaggca 378  Q
    |||||||| ||||||||||||| | |||||||||||||   || |  ||||||| |||| || ||||||| ||||  |||||||||||||    
T  1063300 cttaaatacaaaacaaccaagtatacaaaatactcaaattctaaaaactacaagtctacgtcacatcacggacgcgccaattataaggca 1063211  T

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