View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11706_low_8 (Length: 276)
Name: NF11706_low_8
Description: NF11706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11706_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 276
Target Start/End: Complemental strand, 19351451 - 19351186
Alignment:
| Q |
11 |
cacagaccaccgcttgaaaaccgcaatgcaccggatcacaatcaatttgaaattaaatacagaggaatgctatagacactttgtttctatcacccattct |
110 |
Q |
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| T |
19351451 |
cacataccaccgcttgaaaaccgcaatgcaccggatcacaatcaagttgaaattaaatacagaggaatgctatagacactttgtttctatcacccattct |
19351352 |
T |
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| Q |
111 |
tttattgagtgaaatacatgagtctcacacttagaaaatgagtccttgtgagatccacgtcaatttcaccaataaaaaagtgagtgttagaaagagaatg |
210 |
Q |
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| T |
19351351 |
cttattgagtgaaatacatgagtctcacacttagaaaatgagtcattgtgatatccacgtgagtttcaccaataaaagagtgagtgttagaaagagaatg |
19351252 |
T |
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| Q |
211 |
tctctaaaatttctcattatgttcaaatgttgtctacatctctcaacaaagatacaataattcctc |
276 |
Q |
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| T |
19351251 |
tctctaaaatttctcattacgttcaaatgttgtctacatctctcaacaaagatacaataattcctc |
19351186 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 37285287 - 37285229
Alignment:
| Q |
72 |
gaggaatgctatagacactttgtttctatcacccattcttttattgagtgaaatacatg |
130 |
Q |
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| T |
37285287 |
gaggaatgctatagacactctctttctaacactcactcttttattgggtgaaattcatg |
37285229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 50251562 - 50251607
Alignment:
| Q |
163 |
atccacgtcaatttcacc-aataaaaaagtgagtgttagaaagaga |
207 |
Q |
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| T |
50251562 |
atccacatgaatttcacccaataaaaaagtgagtgttagaaagaga |
50251607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 51902651 - 51902696
Alignment:
| Q |
159 |
tgagatccacgtcaatttcacc-aataaaaaagtgagtgttagaaa |
203 |
Q |
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| T |
51902651 |
tgagatccacatgaatttcacctaataaaaaagtgagtgttagaaa |
51902696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 41746218 - 41746174
Alignment:
| Q |
94 |
tttctatcacccattcttttattgagtgaaatacatgagtctcac |
138 |
Q |
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| T |
41746218 |
tttctaacactcactcttttattgagtgaaattcatgagtctcac |
41746174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 41746186 - 41746226
Alignment:
| Q |
172 |
aatttcac-caataaaaaagtgagtgttagaaagagaatgt |
211 |
Q |
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| T |
41746186 |
aatttcactcaataaaagagtgagtgttagaaagagaatgt |
41746226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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