View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11707_high_10 (Length: 232)
Name: NF11707_high_10
Description: NF11707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11707_high_10 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 133 - 232
Target Start/End: Complemental strand, 40937829 - 40937730
Alignment:
| Q |
133 |
gatgttaagtaaatgtgaatgaagactagttaaggaagaaagggtcaactcgaaagtggaagaaggtaaaagttggtgcatgtaaaagaaaataaacaac |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40937829 |
gatgttaagtaaatgtgaatgaagactagttaaggaagaaagggtcaactcgaaagtggaagaaggtaaaagttggtgcatgtaaaagaaaataaacaac |
40937730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 40937952 - 40937880
Alignment:
| Q |
10 |
aagcaaaggaccaagtcactgttaaaggatgaaaaataattgagcaaaatgaagctaggaagggcgcctttcc |
82 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40937952 |
aagcaaaggaccaagtcactgttaaaggatgaaaaataattgagcaaaatgaagctaggaagggcgcctttcc |
40937880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University