View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11707_high_8 (Length: 250)
Name: NF11707_high_8
Description: NF11707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11707_high_8 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 42202491 - 42202724
Alignment:
| Q |
1 |
caccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatg |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42202491 |
caccgcaatctctttttcaacattttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatg |
42202590 |
T |
|
| Q |
101 |
gtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcg |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
42202591 |
gtcgatttggaaagcccggaatgataggattttcaataatttaatgaaggattatggtgaaatagttgaggaaattaaggtgattttgtggaattgggtg |
42202690 |
T |
|
| Q |
201 |
aatgctagacttaagagtcctccttgcctctatt |
234 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |
|
|
| T |
42202691 |
aattctagacttaagagtcctccttgcctctatt |
42202724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 44684290 - 44684503
Alignment:
| Q |
18 |
caacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaaggccc |
117 |
Q |
| |
|
||||| ||||| ||||||| |||||| | |||||| || || ||||||||||||||| |||| |||||||| ||| | ||| |||| ||||| | |
|
|
| T |
44684290 |
caacattttgagtgttggagtggggagactgggagactaaagctccgtaaaggttattggatgatttggcatgcagttctctggacgatctggaaaacga |
44684389 |
T |
|
| Q |
118 |
ggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaagag |
217 |
Q |
| |
|
|||||||||||||||||||| | | ||| ||| |||| ||||| ||||| || ||||||||| | || ||||||||||||| | | | ||||||||| |
|
|
| T |
44684390 |
ggaatgataggatttttaattctattgtgaaagatcatggggaaattgttgatgacattaaggtgctctcttggaattgggcgattacaaaacttaagag |
44684489 |
T |
|
| Q |
218 |
tcctccttgcctct |
231 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
44684490 |
tcctccctgcctct |
44684503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 25968111 - 25967989
Alignment:
| Q |
18 |
caacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaaggccc |
117 |
Q |
| |
|
||||| ||||||||||||| ||| || ||||||| || || |||||||||||||||||||||| ||||||||| ||||| ||||||| | || | |
|
|
| T |
25968111 |
caacactttgaatgttggagtggagagattgggaagaagagacttcgtaaaggttattggttggcgtggcatgcgtcggtatgggtgatttgggaagcgc |
25968012 |
T |
|
| Q |
118 |
ggaatgataggatttttaataat |
140 |
Q |
| |
|
| ||||| ||||||||||||||| |
|
|
| T |
25968011 |
gtaatgacaggatttttaataat |
25967989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 3678536 - 3678303
Alignment:
| Q |
1 |
caccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatg |
100 |
Q |
| |
|
|||| |||||| | |||||||| ||||| |||||||||||||| || |||||||| |||||||| |||||| |||||||||| ||||||||||| |||| |
|
|
| T |
3678536 |
cacctcaatctatgtttcaacattttgagtgttggaatggggagatcgggaggagtaaacttcggaaaggtcattggttgatttggcatgcggtggtatg |
3678437 |
T |
|
| Q |
101 |
gtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcg |
200 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||| || |||||| || ||||| ||||||||| |||||||| ||||||||||||||||||||||||| | |
|
|
| T |
3678436 |
gacgatttggaaggcgcggaatgataggattttcaaaaatttatcgaaggattttggtgaaattgttgaggagattaaggtgatttcgtggaattgggtg |
3678337 |
T |
|
| Q |
201 |
aatgctagacttaagagtcctccttgcctctatt |
234 |
Q |
| |
|
| | |||||||||||||||||||||||||||||| |
|
|
| T |
3678336 |
attactagacttaagagtcctccttgcctctatt |
3678303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 2756589 - 2756370
Alignment:
| Q |
15 |
tttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaagg |
114 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||| || |||||| ||||||| ||||| || | |||||| | | |||||| |||||||||| | |
|
|
| T |
2756589 |
tttcaacattttgaatgttggagtggggagattgggaagaaaaaactttgtaaaggaaattggatggtttggcattcaatcttatggacgatttggaaag |
2756490 |
T |
|
| Q |
115 |
cccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaa |
214 |
Q |
| |
|
| | ||||||||||||||||||||| | ||| |||||||||||||| ||||| || ||||||||| |||||||||||||| | | ||||||| || |
|
|
| T |
2756489 |
cgagaaatgataggatttttaataatcttgtgaaagattatggtgaaattgttgatgagattaaggtgctttcgtggaattggatggtttctagactaaa |
2756390 |
T |
|
| Q |
215 |
gagtcctccttgcctctatt |
234 |
Q |
| |
|
||| ||||| ||||| |||| |
|
|
| T |
2756389 |
gaggcctccgtgcctttatt |
2756370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 42629292 - 42629067
Alignment:
| Q |
8 |
atctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatt |
107 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||||| | |||| || || ||| ||||||| |||||| |||| ||||||||||| |||||| | ||| |
|
|
| T |
42629292 |
atctctgtttcaacattttgaatgttggagtggggagaccgggaagaaaaagctttgtaaaggatattggatgatttggcatgcggtattatggac-att |
42629194 |
T |
|
| Q |
108 |
tggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgcta |
207 |
Q |
| |
|
||||| | | |||||||||||||||| |||| | ||| || | ||||||||| ||||| ||||||| |||| ||||||||||||||||| | ||| |
|
|
| T |
42629193 |
tggaaagtgagaaatgataggatttttagtaatcttgtgaaagaatttggtgaaattgttgatgaaattatggtgctttcgtggaattgggcggttacta |
42629094 |
T |
|
| Q |
208 |
gacttaagagtcctccttgcctctatt |
234 |
Q |
| |
|
|||| || |||||||| |||||||||| |
|
|
| T |
42629093 |
gactgaaaagtcctccctgcctctatt |
42629067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 38970850 - 38971083
Alignment:
| Q |
1 |
caccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatg |
100 |
Q |
| |
|
|||| |||||||| ||||| || ||||| |||||||||||||| ||||||||| | |||||||| ||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
38970850 |
cacctcaatctctatttcatcattttgagtgttggaatggggagattgggaggcgtaaacttcggaaaggttattggttgatttggcacgcggtgttatg |
38970949 |
T |
|
| Q |
101 |
gtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcg |
200 |
Q |
| |
|
| ||||||||| | |||||||||||||||| || ||| ||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
38970950 |
gatgatttggaaagagaggaatgataggattttcaaaaatcaaatgaaggattttggtgaaattgtggaggaaattaaggtgatttcgtggaattgggca |
38971049 |
T |
|
| Q |
201 |
aatgctagacttaagagtcctccttgcctctatt |
234 |
Q |
| |
|
||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
38971050 |
aattctagacttaaaagtcctcattgcctctatt |
38971083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 9017709 - 9017570
Alignment:
| Q |
1 |
caccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatg |
100 |
Q |
| |
|
|||| |||||| | |||||||| ||||||||||||| ||| || |||| || || | |||||||||||| ||||||||| | |||||||| | | || |
|
|
| T |
9017709 |
caccccaatctttgtttcaacaatttgaatgttggagtggtgatattgagaagaaaagacttcgtaaagggtattggttggtgtggcatgcctctctttg |
9017610 |
T |
|
| Q |
101 |
gtcgatttggaaggcccggaatgataggatttttaataat |
140 |
Q |
| |
|
| ||||||||| | |||||||||| |||||||||||| |
|
|
| T |
9017609 |
gatgatttggaaagtgtggaatgatagaatttttaataat |
9017570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 55328952 - 55329185
Alignment:
| Q |
1 |
caccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatg |
100 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||||||||||||| || |||||| | ||| ||| ||||| ||||||||||| ||||| ||||| ||||| |
|
|
| T |
55328952 |
cacctcaatctctttttcaacattttgagtgttggaatggggagatagggaggcgtaaatttcaaaaaggatattggttgatttggcacgcggtgttatg |
55329051 |
T |
|
| Q |
101 |
gtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcg |
200 |
Q |
| |
|
| |||||||||| || |||||||||||||||| ||||| | ||| ||||| ||||||||| || ||||||||||||||||||||||| ||||| || |
|
|
| T |
55329052 |
gacgatttggaaagcgaggaatgataggattttcaataaccttttgaaggattttggtgaaattgtggaggaaattaaggtgatttcgtgaaattgaacg |
55329151 |
T |
|
| Q |
201 |
aatgctagacttaagagtcctccttgcctctatt |
234 |
Q |
| |
|
||| | |||||||||||| ||||||||||||||| |
|
|
| T |
55329152 |
aattcaagacttaagagttctccttgcctctatt |
55329185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 18847870 - 18848089
Alignment:
| Q |
15 |
tttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaagg |
114 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||| || || ||| ||||||| ||||||||||| ||||||||||| |||||| |||||||||| | |
|
|
| T |
18847870 |
tttcaacattttgaatgttggagtggggagattgggaagaaaaagctttgtaaagggtattggttgatttggcatgcggtattatggacgatttggaaag |
18847969 |
T |
|
| Q |
115 |
cccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaa |
214 |
Q |
| |
|
| | ||||||||||||||||||||| | ||| ||| || |||||| ||||| || ||||||||| ||| ||||||||||||| | |||||||||| |
|
|
| T |
18847970 |
caagaaatgataggatttttaataatcttgtgaaagatcgtgatgaaattgttgatgacattaaggtgctttggtggaattgggcggttactagacttaa |
18848069 |
T |
|
| Q |
215 |
gagtcctccttgcctctatt |
234 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
18848070 |
aagtcctccctgcctctatt |
18848089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 42111293 - 42111080
Alignment:
| Q |
18 |
caacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaaggccc |
117 |
Q |
| |
|
||||| ||||| ||||||| |||||| |||||||| || |||||||||||||||||| |||| |||||||||||| | ||| |||||||||| | |
|
|
| T |
42111293 |
caacattttgagtgttggagtggggagattgggagactaaagcttcgtaaaggttattggatgatttggcatgcggttctttggacgatttggaaaacga |
42111194 |
T |
|
| Q |
118 |
ggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaagag |
217 |
Q |
| |
|
|||||||||||||||||||| | | ||| |||||||| ||||| ||||| || ||||||||| | || ||||||||||||| | | ||||||||||| |
|
|
| T |
42111193 |
ggaatgataggatttttaattctattgtgaaagattatggggaaattgttgatgacattaaggtgctctcttggaattgggcgattacaagacttaagag |
42111094 |
T |
|
| Q |
218 |
tcctccttgcctct |
231 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
42111093 |
tcctcactgcctct |
42111080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 55353392 - 55353593
Alignment:
| Q |
30 |
tgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaaggcccggaatgatagga |
129 |
Q |
| |
|
|||||||||||||| || |||||| | || | || |||||||||||| || | ||||||||||| | |||||||||||||| || |||||||||||| |
|
|
| T |
55353392 |
tgttggaatggggagatcgggaggcgcaagttgcgaaaaggttattggatggtttggcatgcggtgatgtggtcgatttggaaagcgaggaatgatagga |
55353491 |
T |
|
| Q |
130 |
tttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaagagtcctccttgcct |
229 |
Q |
| |
|
|||| ||| | | | | |||| || ||| || ||||| || || |||||||| |||||||||||||||||| | |||||||| |||||||||||||| |
|
|
| T |
55353492 |
ttttcaattctcttgtcaaggatgttgctgatatcgttgatgacatcaaggtgatctcgtggaattgggcgaattccagacttaaaagtcctccttgcct |
55353591 |
T |
|
| Q |
230 |
ct |
231 |
Q |
| |
|
|| |
|
|
| T |
55353592 |
ct |
55353593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 6232009 - 6232242
Alignment:
| Q |
1 |
caccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatg |
100 |
Q |
| |
|
|||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||| | || ||||| ||||||||||||||||| ||||| || || ||||| |
|
|
| T |
6232009 |
cacctcaatccctttttcaacattttgagtgttggaatggggagattgggaggcgtaagcttcggaaaggttattggttgatttggcacgcagtgttatg |
6232108 |
T |
|
| Q |
101 |
gtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcg |
200 |
Q |
| |
|
|||||||||||| || | ||||||| ||| ||||| ||| | | ||||| ||||||| | || ||||| |||||||||||||||||||||||||| |
|
|
| T |
6232109 |
gtcgatttggaaagcgagaaatgatatgatctttaacaatatttccaaggattttggtgaattggtggaggatattaaggtgatttcgtggaattgggct |
6232208 |
T |
|
| Q |
201 |
aatgctagacttaagagtcctccttgcctctatt |
234 |
Q |
| |
|
||| ||||||||| ||||||||| |||||||||| |
|
|
| T |
6232209 |
aattctagacttaggagtcctccatgcctctatt |
6232242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 48887990 - 48888215
Alignment:
| Q |
9 |
tctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgattt |
108 |
Q |
| |
|
||||||||| | || ||||| |||||||||||||| ||||||||| | || ||||| ||||| |||||| |||| ||||||| ||| |||||| |||||| |
|
|
| T |
48887990 |
tctctttttaatcattttgagtgttggaatggggagattgggaggcgaaagcttcgcaaagggtattggatgatttggcatgtggtcttatggacgattt |
48888089 |
T |
|
| Q |
109 |
ggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctag |
208 |
Q |
| |
|
|||| || ||||||||||| ||||| || || ||| || | |||||||| ||||| || ||||||||| | ||||||||||||| |||| |||| |
|
|
| T |
48888090 |
ggaaagctcggaatgatagaattttcaagtcactagtgaaagagttcggtgaaatggttgatgatattaaggtgctctcgtggaattgggtgaattctag |
48888189 |
T |
|
| Q |
209 |
acttaagagtcctccttgcctctatt |
234 |
Q |
| |
|
||| |||||||||||||||||||||| |
|
|
| T |
48888190 |
actaaagagtcctccttgcctctatt |
48888215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 44346457 - 44346511
Alignment:
| Q |
177 |
aaggtgatttcgtggaattgggcgaatgctagacttaagagtcctccttgcctct |
231 |
Q |
| |
|
|||||| ||||||| |||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
44346457 |
aaggtgctttcgtgtaattgggcgaattctagacttaaaagtcctccttgcctct |
44346511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 19883650 - 19883600
Alignment:
| Q |
1 |
caccgcaatctctttttcaacagtttgaatgttggaatggggaaattggga |
51 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||| |||||| ||||||| |
|
|
| T |
19883650 |
cacctcaatctctgtttcaacattttgaatgttggagtggggagattggga |
19883600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 380967 - 380734
Alignment:
| Q |
1 |
caccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatg |
100 |
Q |
| |
|
|||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||| | || | ||| ||||||||||||||||| ||||| || || ||||| |
|
|
| T |
380967 |
cacctcaatccctttttcaacattttgagtgttggaatggggagattgggaggcgtaagcctcggaaaggttattggttgatttggcacgcagtgttatg |
380868 |
T |
|
| Q |
101 |
gtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcg |
200 |
Q |
| |
|
|||||||||||| | | ||||||||||| ||||| ||||| | ||||| ||||||| | || ||||| |||||||||||||||||||||||||| |
|
|
| T |
380867 |
gtcgatttggaaagtgagaaatgataggatctttaacaatttttccaaggattttggtgaattggtggaggatattaaggtgatttcgtggaattgggct |
380768 |
T |
|
| Q |
201 |
aatgctagacttaagagtcctccttgcctctatt |
234 |
Q |
| |
|
||| ||||||||| ||||||||| |||||||||| |
|
|
| T |
380767 |
aattctagacttaggagtcctccatgcctctatt |
380734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 997 - 1210
Alignment:
| Q |
18 |
caacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaaggccc |
117 |
Q |
| |
|
||||| ||||| ||||||| |||||| |||||||| || || ||||||||||||||| |||| |||||||||||| | ||| |||| ||||| | |
|
|
| T |
997 |
caacattttgagtgttggagtggggagattgggagactaaagctccgtaaaggttattggatgatttggcatgcggttctttggacgatctggaaaacga |
1096 |
T |
|
| Q |
118 |
ggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaagag |
217 |
Q |
| |
|
|||||||||||||||||||| | | ||| |||||||| ||||| ||||| || ||||||||| | | ||||||||||||| | | ||||||||||| |
|
|
| T |
1097 |
ggaatgataggatttttaattctattgtgaaagattatggggaaattgttgatgacattaaggtgctcccttggaattgggcgattacaagacttaagag |
1196 |
T |
|
| Q |
218 |
tcctccttgcctct |
231 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
1197 |
tcctccctgcctct |
1210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 234
Target Start/End: Original strand, 51361138 - 51361307
Alignment:
| Q |
65 |
taaaggttattggttgatatggcatgcggttttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaata |
164 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |||||| ||| | ||| || |||||||||||||||||||||| | | | ||| | |||||||| |
|
|
| T |
51361138 |
taaagggtattggttgacttggcatgcggtattatggatgatatagaaagcaaggaatgataggatttttaataagattgttaaagatcacggtgaaatt |
51361237 |
T |
|
| Q |
165 |
gttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaagagtcctccttgcctctatt |
234 |
Q |
| |
|
||| | || ||||||||| ||| |||||||||| || | ||||||| || ||| |||| |||||||||| |
|
|
| T |
51361238 |
gtttatgacattaaggtgcttttgtggaattggacggttactagactcaaaagttctccctgcctctatt |
51361307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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