View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11707_low_1 (Length: 475)
Name: NF11707_low_1
Description: NF11707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11707_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 12 - 456
Target Start/End: Complemental strand, 40936591 - 40936147
Alignment:
| Q |
12 |
aggagcagagagagaaatcggataagtgagtgttggctaagaggctgagactttgacagtatgagtgaaaactcaaatagggaactttatatatttgtta |
111 |
Q |
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| T |
40936591 |
aggagaagagagagaaatcggataagtgagtgttggctaagaggctgagactttgacagtatgagtgaaaactcaaatagggaactttatatatttgtta |
40936492 |
T |
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| Q |
112 |
tctgtccatgcccgtattttaaaataggaaaaaactcaaattcatacctaaattctatcaaaatgggaaaatccgttaaattgtgattggttcgagtaaa |
211 |
Q |
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| T |
40936491 |
tctgtccatgcccgtattttaaaataggaaaaaactcaaattcatacctaaattctatcaaaatgggaaaatccgttaaattgtgattggttcgagtaaa |
40936392 |
T |
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| Q |
212 |
aacccgtagattttgttgccatccctggtctgtgtagcaagtcttgttgcgattcacttaatatttgaataaactcttaagnnnnnnnnnnnnnnnnnnn |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40936391 |
aacccgtagattttgttgccatccctggtctgtgtagcaagtcttgttgcgattcacttaatatttgagtaaactcttaagttttttctttcttcctttt |
40936292 |
T |
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| Q |
312 |
nnnactcaaataaattccaaagtttgcattctaaatttatacaattaatcatcgaatttgccttcataaaaatcaaaattaaaagccagtgcattaatct |
411 |
Q |
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| T |
40936291 |
tttactcaaataaattccaaagtttgcattctaaatttatacaattaatcatcgaatttgccttcataaaaatcaaaattaaaagccaatgcattaatct |
40936192 |
T |
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| Q |
412 |
ttcaaaagttttatattgaattggtccctaataaattgaactatt |
456 |
Q |
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| T |
40936191 |
ttcaaaagttttatattgaattggtccctaataaattgaactatt |
40936147 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 21956848 - 21956788
Alignment:
| Q |
122 |
cccgtattttaaaataggaaaaaactcaaattcatacctaaattctatcaaaatgggaaaa |
182 |
Q |
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| T |
21956848 |
cccgtgttttaaaatcggaaaaaacccaaactcatacccaaatccaattaaaatgggaaaa |
21956788 |
T |
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