View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11707_low_3 (Length: 366)

Name: NF11707_low_3
Description: NF11707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11707_low_3
NF11707_low_3
[»] chr6 (4 HSPs)
chr6 (1-227)||(16388646-16388862)
chr6 (246-312)||(17940901-17940967)
chr6 (187-246)||(21813904-21813963)
chr6 (195-243)||(30747640-30747688)
[»] chr4 (6 HSPs)
chr4 (1-132)||(48667965-48668096)
chr4 (246-336)||(52934491-52934581)
chr4 (260-315)||(21466441-21466496)
chr4 (269-338)||(44441079-44441148)
chr4 (299-336)||(13501103-13501140)
chr4 (191-224)||(44124103-44124136)
[»] chr1 (1 HSPs)
chr1 (247-296)||(35877099-35877147)
[»] chr7 (5 HSPs)
chr7 (247-283)||(22835169-22835205)
chr7 (261-336)||(30588216-30588291)
chr7 (270-315)||(713377-713422)
chr7 (301-338)||(39172224-39172261)
chr7 (246-333)||(48030251-48030339)
[»] chr3 (3 HSPs)
chr3 (194-234)||(52259339-52259379)
chr3 (195-234)||(42314168-42314207)
chr3 (260-314)||(14859811-14859865)
[»] chr2 (1 HSPs)
chr2 (252-296)||(27494911-27494955)
[»] scaffold0444 (1 HSPs)
scaffold0444 (269-338)||(5892-5961)
[»] chr5 (1 HSPs)
chr5 (194-226)||(4524087-4524119)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 6e-96; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 16388862 - 16388646
Alignment:
Q  1 agagaatgatagcaagaacttgattgaagagtttatctaggtatagaggaagagcctgcatattggacatttgaaagccaatggctgtcaaaaagttagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16388862 agagaatgatagcaagaacttgattgaagagtttatctaggtatagaggaagagcctgcatattggacatttgaaagccaatggctgtcaaaaagttagg 16388763  T
Q  101 ccggtttaaggaatcagtgaaaacaaaatcaaaatgaaaatgaagaactcgcacagtccctttttatcagaacatttaacaaaaataattacaggtatta 200  Q
    | ||||||||||||||||||||||||||||||||      |||||||||| ||||||||||||||||||||||||||||||||   ||||||||||||||    
T  16388762 ctggtttaaggaatcagtgaaaacaaaatcaaaa------tgaagaactc-cacagtccctttttatcagaacatttaacaaa---aattacaggtatta 16388673  T
Q  201 agaaaagttgttggagaaataaattta 227  Q
    |||||||||||||||||||||||||||    
T  16388672 agaaaagttgttggagaaataaattta 16388646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 17940967 - 17940901
Alignment:
Q  246 aattaccctttgtatataaatacattcaatgttattttttcatatttc-aagtcaattgatagtatta 312  Q
    |||||||||||||||||| || |||||||||||||||||| ||||||| || | ||||||||||||||    
T  17940967 aattaccctttgtatatatatgcattcaatgttatttttt-atatttcaaaataaattgatagtatta 17940901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 21813904 - 21813963
Alignment:
Q  187 aattacaggtattaagaaaagttgttggagaaataaatttatcacaaaaatgtgtgatta 246  Q
    |||||| ||||||||||||||||||||||| ||||||||| || ||||  ||||||||||    
T  21813904 aattacgggtattaagaaaagttgttggagtaataaatttgtctcaaatgtgtgtgatta 21813963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 30747640 - 30747688
Alignment:
Q  195 gtattaagaaaagttgttggagaaataaatttatcacaaaaatgtgtga 243  Q
    |||||||||||||||||||||| |||||| || || |||| ||||||||    
T  30747640 gtattaagaaaagttgttggagtaataaagttgtcccaaatatgtgtga 30747688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 48668096 - 48667965
Alignment:
Q  1 agagaatgatagcaagaacttgattgaagagtttatctaggtatagaggaagagcctgcatattggacatttgaaagccaatggctgtcaaaaagttagg 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||  |||||||||||| ||||||||||||||||||    
T  48668096 agagaatgatagcaagaaattgattgaagagtttatctaggtatataggaagagcctgcagattggaagtttgaaagccaacggctgtcaaaaagttagg 48667997  T
Q  101 ccggtttaaggaatcagtgaaaacaaaatcaa 132  Q
    | || || ||||||||||| ||| ||||||||    
T  48667996 cagggtttaggaatcagtgcaaataaaatcaa 48667965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 336
Target Start/End: Original strand, 52934491 - 52934581
Alignment:
Q  246 aattaccctttgtatataaatacattcaatgttattttttcatatttcaag-tcaattgatagtattaatacggagtatatttgaaaaaaga 336  Q
    ||||| ||||||| ||||||||||||||||||||  |||||||||| |||| | ||||||| ||||||||| || ||||||  |||||||||    
T  52934491 aattatcctttgtttataaatacattcaatgtta-cttttcatattccaagatgaattgattgtattaataaggggtatataggaaaaaaga 52934581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 315
Target Start/End: Complemental strand, 21466496 - 21466441
Alignment:
Q  260 tataaatacattcaatgttattttttcatatttcaagtcaattgatagtattaata 315  Q
    |||||||||||||||||||  ||||| |||||||||  ||||||| ||||||||||    
T  21466496 tataaatacattcaatgttgattttttatatttcaaaacaattgaaagtattaata 21466441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 44441148 - 44441079
Alignment:
Q  269 attcaatgttattttttcatatttcaagtcaattgatagtattaatacggagtatattt-gaaaaaagagt 338  Q
    ||||||||||  || ||||||||||||| |||||| ||||||||||| || |||||||| |||||||||||    
T  44441148 attcaatgttgattattcatatttcaaggcaattggtagtattaataagg-gtatatttggaaaaaagagt 44441079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 13501140 - 13501103
Alignment:
Q  299 aattgatagtattaatacggagtatatttgaaaaaaga 336  Q
    |||||||||||||||||  |||||||||||||||||||    
T  13501140 aattgatagtattaataaagagtatatttgaaaaaaga 13501103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 44124136 - 44124103
Alignment:
Q  191 acaggtattaagaaaagttgttggagaaataaat 224  Q
    |||||||||||||||||||||||||| |||||||    
T  44124136 acaggtattaagaaaagttgttggagcaataaat 44124103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 35877147 - 35877099
Alignment:
Q  247 attaccctttgtatataaatacattcaatgttattttttcatatttcaag 296  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35877147 attaccctttgtatataaatacattcaatgttat-ttttcatatttcaag 35877099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 22835205 - 22835169
Alignment:
Q  247 attaccctttgtatataaatacattcaatgttatttt 283  Q
    |||||||||||||||||| ||||||||||||||||||    
T  22835205 attaccctttgtatataagtacattcaatgttatttt 22835169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 30588216 - 30588291
Alignment:
Q  261 ataaatacattcaatgttattttttcatatttcaagtcaattgatagtattaatacggagtatatttgaaaaaaga 336  Q
    |||||| |||| ||||||  ||||||||||| ||||  ||||||||||||||||| |  ||||| |||||||||||    
T  30588216 ataaatccatttaatgttgatttttcatattccaagataattgatagtattaataagaggtatagttgaaaaaaga 30588291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 713422 - 713377
Alignment:
Q  270 ttcaatgttattttttcatatttcaagtcaattgatagtattaata 315  Q
    |||||||||  |||||| ||||||||| ||||||||||||||||||    
T  713422 ttcaatgttgatttttcttatttcaagacaattgatagtattaata 713377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 39172224 - 39172261
Alignment:
Q  301 ttgatagtattaatacggagtatatttgaaaaaagagt 338  Q
    ||||||||||||||| || |||||||||||||||||||    
T  39172224 ttgatagtattaataaggggtatatttgaaaaaagagt 39172261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 333
Target Start/End: Complemental strand, 48030339 - 48030251
Alignment:
Q  246 aattaccctttgtatataaatacattcaatgttattttttcatatttcaag-tcaattgatagtattaatacggagtatatttgaaaaa 333  Q
    |||| ||||||| ||||| ||| |||||||||||  |||||||||| |||| | ||||  ||||||||||| ||  |||||||||||||    
T  48030339 aattgccctttgcatatagatatattcaatgttaacttttcatattccaagataaatttgtagtattaataagggatatatttgaaaaa 48030251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 52259379 - 52259339
Alignment:
Q  194 ggtattaagaaaagttgttggagaaataaatttatcacaaa 234  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  52259379 ggtattaagaaaagttgttggagtaataaatttgtcacaaa 52259339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 42314207 - 42314168
Alignment:
Q  195 gtattaagaaaagttgttggagaaataaatttatcacaaa 234  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  42314207 gtattaagaaaagttgttggagtaataaatttgtcacaaa 42314168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 14859811 - 14859865
Alignment:
Q  260 tataaatacattcaatgttattttttcatatttcaagtcaattgatagtattaat 314  Q
    ||||||| |||||||||||| || |||||||| |||| |||||| ||||||||||    
T  14859811 tataaatgcattcaatgttaattattcatattacaagacaattgttagtattaat 14859865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 27494911 - 27494955
Alignment:
Q  252 cctttgtatataaatacattcaatgttattttttcatatttcaag 296  Q
    |||||||||||||||| ||| ||||||| ||||||||||||||||    
T  27494911 cctttgtatataaatatatttaatgttaatttttcatatttcaag 27494955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 5961 - 5892
Alignment:
Q  269 attcaatgttattttttcatatttcaagtcaattgatagtattaatacggagtatattt-gaaaaaagagt 338  Q
    ||||||||||  || ||||||||||||| |||||| ||||||||||| || |||||||| |||||||||||    
T  5961 attcaatgttgattattcatatttcaaggcaattggtagtattaataagg-gtatatttggaaaaaagagt 5892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 4524119 - 4524087
Alignment:
Q  194 ggtattaagaaaagttgttggagaaataaattt 226  Q
    ||||||||||||||||||||||| |||||||||    
T  4524119 ggtattaagaaaagttgttggagtaataaattt 4524087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University