View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11707_low_9 (Length: 256)

Name: NF11707_low_9
Description: NF11707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11707_low_9
NF11707_low_9
[»] chr8 (1 HSPs)
chr8 (1-161)||(42202254-42202414)
[»] chr3 (2 HSPs)
chr3 (164-246)||(48531509-48531591)
chr3 (162-246)||(3549584-3549668)
[»] chr5 (1 HSPs)
chr5 (6-108)||(3678618-3678720)
[»] chr7 (2 HSPs)
chr7 (23-159)||(6231774-6231910)
chr7 (26-158)||(48887748-48887880)
[»] chr6 (1 HSPs)
chr6 (23-116)||(381066-381159)
[»] chr4 (2 HSPs)
chr4 (23-156)||(55328721-55328853)
chr4 (162-244)||(25222149-25222231)
[»] chr2 (1 HSPs)
chr2 (21-116)||(38970658-38970753)


Alignment Details
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 42202414 - 42202254
Alignment:
Q  1 atttaccgtttccgcctcttgttcacaaaactcacacctccccaaggacaccggtgctagtatacgcctagtcaaaagattgtctttggttgggatacgg 100  Q
    |||| ||||||  ||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  42202414 atttgccgtttaagccgcttgttcaaaaaactcacacctccccaaggacaccggtgctagtatacacctactcaaaagattgtctttggtcgggatacgg 42202315  T
Q  101 ttgagtagaaattgccnnnnnnncacaaccacttttgctggcgccgggcttttccacaata 161  Q
    |||| ||| |||||||       ||||||||||||||  ||||||||||||||||||||||    
T  42202314 ttgaatagtaattgccaagaaaacacaaccacttttgagggcgccgggcttttccacaata 42202254  T

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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 48531591 - 48531509
Alignment:
Q  164 tttataggagctaattcccaaaattattgttgattttgtatatgtggtagtaaacaaattttcataaaataaatgttgtttct 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48531591 tttataggagctaattcccaaaattattgttgattttgtatatgtggtagtaaacaaattttcataaaataaatgttgtttct 48531509  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 246
Target Start/End: Original strand, 3549584 - 3549668
Alignment:
Q  162 tatttataggagctaattcccaaaattattgttgattttgtatatgtggtagtaaacaaattttcataaaataaatgttgtttct 246  Q
    |||||||| |||||||| | |||||| ||||||||||||| |||||||| ||||  ||||||||||||  ||||||||| |||||    
T  3549584 tatttataagagctaatgctcaaaatcattgttgattttgaatatgtggcagtattcaaattttcataccataaatgttatttct 3549668  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 3678618 - 3678720
Alignment:
Q  6 ccgtttccgcctcttgttcacaaaactcacacctccccaaggacaccggtgctagtatacgcctagtcaaaagattgtctttggttgggatacggttgag 105  Q
    ||||||||||| |||| |||||||| ||||||||||| |||||||||||||  || ||||||||| ||||||| |||| ||| || || ||||| |||||    
T  3678618 ccgtttccgccgcttgatcacaaaaatcacacctccctaaggacaccggtggaaggatacgcctactcaaaaggttgttttttgtcggaatacgattgag 3678717  T
Q  106 tag 108  Q
    |||    
T  3678718 tag 3678720  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 6231910 - 6231774
Alignment:
Q  23 tcacaaaactcacacctccccaaggacaccggtgctagtatacgcctagtcaaaagattgtctttggttgggatacggttgagtagaaattgccnnnnnn 122  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||||| |||  |  |||||||| ||||| ||||| ||||| || |||||||          
T  6231910 tcacaaaactcacacttccccaaagacaccggtggtagtatacgcctactcagcaagttgtcttttgttggtatacgattgaggagtaattgccaagaga 6231811  T
Q  123 ncacaaccacttttgctggcgccgggcttttccacaa 159  Q
      ||||||||||||   |||||||||||| |||||||    
T  6231810 aaacaaccacttttagaggcgccgggcttctccacaa 6231774  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 48887880 - 48887748
Alignment:
Q  26 caaaactcacacctccccaaggacaccggtgctagtatacgcctagtcaaaagattgtctttggttgggatacggttgagtagaaattgccnnnnnnnca 125  Q
    ||||| |||||| |||| ||||||||||||||||| ||||||||  |||| || || ||||| || |||||||| ||||| || |||||||        |    
T  48887880 caaaattcacacttccctaaggacaccggtgctagaatacgccttctcaagaggttatctttcgtcgggatacgattgagaagcaattgccaagaaaaaa 48887781  T
Q  126 caaccacttttgctggcgccgggcttttccaca 158  Q
    | ||||||||||  |||||||| ||||||||||    
T  48887780 ccaccacttttgaaggcgccggacttttccaca 48887748  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 381066 - 381159
Alignment:
Q  23 tcacaaaactcacacctccccaaggacaccggtgctagtatacgcctagtcaaaagattgtctttggttgggatacggttgagtagaaattgcc 116  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||||| |||  |  |||||||| ||||| ||||| ||||| || |||||||    
T  381066 tcacaaaactcacacttccccaaagacaccggtggtagtatacgcctactcagcaagttgtcttttgttggtatacgattgaggagtaattgcc 381159  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 55328853 - 55328721
Alignment:
Q  23 tcacaaaactcacacctccccaaggacaccggtgctagtatacgcctagtcaaaagattgtctttggttgggatacggttgagtagaaattgccnnnnnn 122  Q
    ||||||||||||||||| || |||| |||||||||||| ||||||||| |||| || || ||||| |||||||| || ||||| || | |||||          
T  55328853 tcacaaaactcacaccttcctaagg-caccggtgctaggatacgcctactcaagaggttatcttttgttgggattcgattgaggagcacttgccaagaga 55328755  T
Q  123 ncacaaccacttttgctggcgccgggcttttcca 156  Q
      || ||||||||||  |||||||||||||||||    
T  55328754 aaaccaccacttttgaaggcgccgggcttttcca 55328721  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 25222231 - 25222149
Alignment:
Q  162 tatttataggagctaattcccaaaattattgttgattttgtatatgtggtagtaaacaaattttcataaaataaatgttgttt 244  Q
    ||||||||||||||||| |||| ||| |||  | | ||| |  |||||||||||||| ||||||  |||||||||||||||||    
T  25222231 tatttataggagctaatgcccataatcattcctaaatttattcatgtggtagtaaactaattttagtaaaataaatgttgttt 25222149  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 38970753 - 38970658
Alignment:
Q  21 gttcacaaaactcacacctccccaaggacaccggtgctagtatacgcctagtcaaaagattgtctttggttgggatacggttgagtagaaattgcc 116  Q
    |||||| |||||||||||| || | |||||||| |||||| |||||| || ||||||| |||||||| || |  ||||| ||||| || |||||||    
T  38970753 gttcacgaaactcacaccttcctagggacaccgatgctaggatacgcgtactcaaaaggttgtctttagtcgaaatacgattgaggagcaattgcc 38970658  T

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