View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11708_high_10 (Length: 541)

Name: NF11708_high_10
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11708_high_10
NF11708_high_10
[»] chr7 (15 HSPs)
chr7 (23-239)||(26154190-26154401)
chr7 (195-307)||(26154064-26154177)
chr7 (345-450)||(26153807-26153912)
chr7 (199-307)||(12869407-12869516)
chr7 (332-413)||(29248788-29248869)
chr7 (196-262)||(12168716-12168783)
chr7 (334-397)||(44225903-44225966)
chr7 (101-185)||(12869647-12869732)
chr7 (415-478)||(28861998-28862061)
chr7 (234-305)||(29248724-29248794)
chr7 (415-478)||(32171024-32171087)
chr7 (95-141)||(29256155-29256201)
chr7 (139-208)||(2986991-2987060)
chr7 (195-239)||(12869534-12869578)
chr7 (415-483)||(30982255-30982323)
[»] chr8 (21 HSPs)
chr8 (190-307)||(24618831-24618949)
chr8 (143-259)||(29671387-29671505)
chr8 (190-307)||(15892894-15893012)
chr8 (332-413)||(15893004-15893085)
chr8 (332-406)||(4472778-4472852)
chr8 (341-406)||(27187760-27187825)
chr8 (332-413)||(30944849-30944930)
chr8 (101-215)||(27187441-27187560)
chr8 (198-259)||(27187653-27187714)
chr8 (336-397)||(33228410-33228471)
chr8 (334-414)||(29671277-29671357)
chr8 (415-478)||(426208-426270)
chr8 (95-175)||(24618590-24618673)
chr8 (190-223)||(24618640-24618673)
chr8 (139-184)||(24618828-24618873)
chr8 (190-239)||(27187587-27187636)
chr8 (199-232)||(32076613-32076646)
chr8 (183-283)||(33228491-33228591)
chr8 (415-484)||(42996563-42996632)
chr8 (196-263)||(5015891-5015958)
chr8 (237-305)||(30944924-30944991)
[»] chr1 (8 HSPs)
chr1 (89-232)||(38810020-38810166)
chr1 (190-306)||(38810192-38810309)
chr1 (334-397)||(25818599-25818662)
chr1 (187-225)||(33401829-33401867)
chr1 (438-484)||(34187365-34187411)
chr1 (190-223)||(1181137-1181170)
chr1 (190-223)||(12067639-12067672)
chr1 (373-414)||(38810335-38810376)
[»] chr5 (28 HSPs)
chr5 (199-307)||(6374850-6374959)
chr5 (196-284)||(16109654-16109745)
chr5 (197-307)||(8736267-8736378)
chr5 (190-286)||(28197020-28197116)
chr5 (139-234)||(8736153-8736248)
chr5 (324-411)||(8736362-8736449)
chr5 (213-307)||(16109555-16109650)
chr5 (332-414)||(6374776-6374858)
chr5 (336-414)||(33937152-33937230)
chr5 (190-239)||(18263318-18263367)
chr5 (234-307)||(33937226-33937299)
chr5 (332-397)||(38740008-38740073)
chr5 (138-232)||(6375049-6375143)
chr5 (190-232)||(33937407-33937449)
chr5 (183-307)||(17344428-17344552)
chr5 (206-239)||(20421576-20421609)
chr5 (414-478)||(42909826-42909890)
chr5 (441-484)||(10232600-10232643)
chr5 (441-484)||(12661874-12661917)
chr5 (187-225)||(34016393-34016431)
chr5 (332-413)||(16109482-16109563)
chr5 (332-397)||(17344371-17344436)
chr5 (332-397)||(20883529-20883594)
chr5 (183-307)||(26505993-26506117)
chr5 (138-232)||(28197190-28197292)
chr5 (332-397)||(35049334-35049399)
chr5 (415-471)||(471928-471984)
chr5 (190-226)||(16109773-16109809)
[»] chr4 (6 HSPs)
chr4 (332-414)||(41784827-41784909)
chr4 (234-305)||(41784903-41784974)
chr4 (336-397)||(1938792-1938853)
chr4 (206-239)||(21178639-21178672)
chr4 (190-226)||(41785088-41785124)
chr4 (339-397)||(50006869-50006927)
[»] chr3 (9 HSPs)
chr3 (332-414)||(30531234-30531316)
chr3 (196-263)||(32125083-32125151)
chr3 (190-252)||(9193989-9194051)
chr3 (137-184)||(9194009-9194056)
chr3 (241-307)||(27934319-27934385)
chr3 (234-304)||(30531311-30531381)
chr3 (95-176)||(30531562-30531646)
chr3 (332-397)||(20514194-20514259)
chr3 (196-224)||(30531562-30531590)
[»] scaffold0070 (1 HSPs)
scaffold0070 (332-414)||(45736-45818)
[»] chr2 (7 HSPs)
chr2 (332-390)||(22728379-22728437)
chr2 (234-305)||(28758989-28759060)
chr2 (415-483)||(37085120-37085190)
chr2 (190-224)||(19478974-19479008)
chr2 (190-232)||(28759168-28759210)
chr2 (336-414)||(36342434-36342512)
chr2 (332-397)||(35004294-35004359)
[»] chr6 (4 HSPs)
chr6 (183-307)||(1031218-1031343)
chr6 (190-252)||(7647961-7648023)
chr6 (332-397)||(1031161-1031226)
chr6 (336-414)||(7648080-7648158)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 8e-50; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 26154401 - 26154190
Alignment:
Q  23 atgttgggtactgatataggagcagaatagcattgaatgaaattaaccaagtcattaatgattcattgatttgtaatttttacactctcataattgaccc 122  Q
    ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||        ||||||||||| || || |||| | | ||    
T  26154401 atgttggctacagatataggagcagaatagcattgaatgacattaaccaagtcattaatgatt--------tgtaatttttatacacttataacttatcc 26154310  T
Q  123 gaattacaccagtttaaca---taatcacacataatcgatccaaatttaacaaattcgttgttaattacgtaattacacataaacgatccaaattacaca 219  Q
    |||||||||||||||||||   ||||| |||||||| ||||||||||| |||||| ||| ||||||||   ||| |||||||||||||||||||||||||    
T  26154309 gaattacaccagtttaacaacataatctcacataattgatccaaatttcacaaatgcgtcgttaattagagaatcacacataaacgatccaaattacaca 26154210  T
Q  220 aattcgttgttaaatacaca 239  Q
    ||||||| ||||||||||||    
T  26154209 aattcgtcgttaaatacaca 26154190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 195 - 307
Target Start/End: Complemental strand, 26154177 - 26154064
Alignment:
Q  195 acacataaacgatccaaattacacaaattcgttgttaaat-acacataacacaaattcattcaaattcaaagttagagacacaaattcgaacacaataca 293  Q
    |||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||    
T  26154177 acacataaacgatccaaattacacaaattcatcgttaaattacacataacacaaattcattaaaattcaacgttagagacacaaattcgaacacattaca 26154078  T
Q  294 ttattacacgttaa 307  Q
    ||||||||||||||    
T  26154077 ttattacacgttaa 26154064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 345 - 450
Target Start/End: Complemental strand, 26153912 - 26153807
Alignment:
Q  345 tattagacttcaatggatcggagataaagacataaaatgttattttgaaccattaatctaaatatgtaatgagtagtgatatttgagcaaccatatgtga 444  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||    
T  26153912 tattacacttcaatggatcggacataaagagataaaatgttattttgaaccattaatctaaatatgtaatgagtagtgatatttgaacaaacatatgaga 26153813  T
Q  445 caactt 450  Q
    ||||||    
T  26153812 caactt 26153807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 199 - 307
Target Start/End: Complemental strand, 12869516 - 12869407
Alignment:
Q  199 ataaacgatccaaattacacaaattcgttgttaaa-tacacataacacaaattcattcaaattcaaagttagagacacaaattcgaacacaatacattat 297  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||| ||||| |   |||  ||||||||||| |||||| |||| |||    
T  12869516 ataaacgatccaaattacacaaactcgtcgttaaattacacataacataaattcattaaaattgattattatggacacaaattcaaacacattacactat 12869417  T
Q  298 tacacgttaa 307  Q
    ||| ||||||    
T  12869416 tacgcgttaa 12869407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 413
Target Start/End: Original strand, 29248788 - 29248869
Alignment:
Q  332 acacgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccattaatctaaatatgtaa 413  Q
    ||||||| |||||||||| ||||||||||||| || |||||||   ||||||||||||| |||||||||  |||| ||||||    
T  29248788 acacgttcataaatattacacttcaatggatcagacataaagatgcaaaatgttattttcaaccattaaattaaacatgtaa 29248869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 12168716 - 12168783
Alignment:
Q  196 cacataaacgatccaaattacacaaattcgttgttaaa-tacacataacacaaattcattcaaattca 262  Q
    |||||||||| || ||||||||||||||| | |||||| |||||| |||||||||||||| |||||||    
T  12168716 cacataaacggtcaaaattacacaaattcatcgttaaattacacacaacacaaattcattaaaattca 12168783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 44225966 - 44225903
Alignment:
Q  334 acgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccat 397  Q
    |||||||||||||||| ||||||| |||||||| |||||||  ||||| |||||||| ||||||    
T  44225966 acgttaataaatattacacttcaacggatcggacataaagatgtaaaaggttattttcaaccat 44225903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 12869732 - 12869647
Alignment:
Q  101 tttacactctcataattgacccgaattacaccagtttaacataatca-cacataatcgatccaaatttaacaaattcgttgttaat 185  Q
    ||||||| ||| ||||||| |||||||||| ||||||||||  || | |||||||||||||||| ||| ||||||| |||| ||||    
T  12869732 tttacacactcgtaattgaaccgaattacatcagtttaacaacataatcacataatcgatccaattttcacaaatttgttgataat 12869647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 478
Target Start/End: Original strand, 28861998 - 28862061
Alignment:
Q  415 gagtagtgatatttgagcaaccatatgtgacaacttctcaattctctcttttcattggttaaaa 478  Q
    |||||||||||||||| ||| ||| |||||||||||||   ||| |||||||||| ||||||||    
T  28861998 gagtagtgatatttgaacaatcatttgtgacaacttcttttttccctcttttcatcggttaaaa 28862061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 29248724 - 29248794
Alignment:
Q  234 tacacataacacaaattcattcaaattcaaagttagagacacaaattcgaacacaatacattattacacgtt 305  Q
    ||||||||||||||||||||| ||||||||  |||  |||||||||| ||| ||| |||| |||||||||||    
T  29248724 tacacataacacaaattcatttaaattcaacattacggacacaaattggaa-acattacactattacacgtt 29248794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 478
Target Start/End: Original strand, 32171024 - 32171087
Alignment:
Q  415 gagtagtgatatttgagcaaccatatgtgacaacttctcaattctctcttttcattggttaaaa 478  Q
    |||||||||||||||| ||||||| || ||||| ||||   |||||||||||||||||| ||||    
T  32171024 gagtagtgatatttgaacaaccatttgagacaatttcttttttctctcttttcattggtcaaaa 32171087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 29256155 - 29256201
Alignment:
Q  95 gtaatttttacactctcataattgacccgaattacaccagtttaaca 141  Q
    ||||| ||||||| ||||||||||| ||||||||| |||||||||||    
T  29256155 gtaatctttacacactcataattgaaccgaattacgccagtttaaca 29256201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 2986991 - 2987060
Alignment:
Q  139 acataatcacacataatcgatccaaatttaacaaattcgttgttaattacgtaattacacataaacgatc 208  Q
    ||||||||| |||||| |||||||||||  |||||||| | ||| || ||| ||| ||||||||||||||    
T  2986991 acataatcatacataaacgatccaaattacacaaattcatcgtttatcacgcaatcacacataaacgatc 2987060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 12869578 - 12869534
Alignment:
Q  195 acacataaacgatccaaattacacaaattcgttgttaaatacaca 239  Q
    |||||||| ||||| |||||| |||||||||| ||||||||||||    
T  12869578 acacataatcgatcaaaattatacaaattcgtcgttaaatacaca 12869534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 483
Target Start/End: Original strand, 30982255 - 30982323
Alignment:
Q  415 gagtagtgatatttgagcaaccatatgtgacaacttctcaattctctcttttcattggttaaaattaat 483  Q
    |||||||||||||||| ||||||| | |||||||||||   | ||||||||| |||||| |||| ||||    
T  30982255 gagtagtgatatttgaacaaccatttttgacaacttctttttcctctctttttattggtaaaaaataat 30982323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 190 - 307
Target Start/End: Original strand, 24618831 - 24618949
Alignment:
Q  190 taattacacataaacgatccaaattacacaaattcgttgttaaat-acacataacacaaattcattcaaattcaaagttagagacacaaattcgaacaca 288  Q
    |||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||  ||| |||||||||||||||||||    
T  24618831 taatcacacataaacgatccaaattacacaaattcgtcgttaaattacacataacacaaattcattaaaattcaacattacagacacaaattcgaacaca 24618930  T
Q  289 atacattattacacgttaa 307  Q
     |||| |||||||||||||    
T  24618931 ttacactattacacgttaa 24618949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 143 - 259
Target Start/End: Complemental strand, 29671505 - 29671387
Alignment:
Q  143 aatcacacataatcgatccaaatttaacaaattcgttgttaattac--gtaattacacataaacgatccaaattacacaaattcgttgttaaatacacat 240  Q
    ||||||||||||||||| ||||||  |||||||||| |||||| ||  ||||| ||||||||| |||||||||||||||||||||| ||||||||||||     
T  29671505 aatcacacataatcgattcaaattacacaaattcgtcgttaatcacacgtaatcacacataaatgatccaaattacacaaattcgtcgttaaatacacaa 29671406  T
Q  241 aacacaaattcattcaaat 259  Q
      |||||||||||| ||||    
T  29671405 tccacaaattcattaaaat 29671387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 307
Target Start/End: Original strand, 15892894 - 15893012
Alignment:
Q  190 taattacacataaacgatccaaattacacaaattcgttgttaaat-acacataacacaaattcattcaaattcaaagttagagacacaaattcgaacaca 288  Q
    ||||| ||||||||| |||||||||||| || ||||| ||||||| |||||||||||||||||||| ||||||||  |||  || |||||||| ||||||    
T  15892894 taattgcacataaacaatccaaattacaaaatttcgtcgttaaattacacataacacaaattcattaaaattcaacattacggaaacaaattcaaacaca 15892993  T
Q  289 atacattattacacgttaa 307  Q
     |||| |||||||||||||    
T  15892994 ttacactattacacgttaa 15893012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 332 - 413
Target Start/End: Original strand, 15893004 - 15893085
Alignment:
Q  332 acacgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccattaatctaaatatgtaa 413  Q
    |||||||||||||||||| ||||||| ||||| || |||||||  |||||||||||||| ||||||||| ||||| ||||||    
T  15893004 acacgttaataaatattacacttcaacggatcagacataaagatgtaaaatgttattttcaaccattaacctaaacatgtaa 15893085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 406
Target Start/End: Original strand, 4472778 - 4472852
Alignment:
Q  332 acacgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccattaatctaaa 406  Q
    |||||||||||||||||| ||||||||||||| || | |||||  |||||||||||||| ||||||||| |||||    
T  4472778 acacgttaataaatattacacttcaatggatcagacacaaagatgtaaaatgttattttcaaccattaaactaaa 4472852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 406
Target Start/End: Original strand, 27187760 - 27187825
Alignment:
Q  341 taaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccattaatctaaa 406  Q
    |||||||||||||| ||||||||| | |||||||| |||||||||||||| ||||||||| |||||    
T  27187760 taaatattagactttaatggatcgaacataaagacgtaaaatgttattttcaaccattaacctaaa 27187825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 413
Target Start/End: Complemental strand, 30944930 - 30944849
Alignment:
Q  332 acacgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccattaatctaaatatgtaa 413  Q
    ||||||| |||||||||| ||||||||||||| || |||||||   ||||||||||||| |||||||||  |||| ||||||    
T  30944930 acacgttcataaatattacacttcaatggatcagacataaagatgcaaaatgttattttcaaccattaaattaaacatgtaa 30944849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 27187441 - 27187560
Alignment:
Q  101 tttacactctcataattgacccgaattacaccagttt---aacataatcacacataatcgatccaaatttaacaaattcgttgtt--aattacgtaatta 195  Q
    ||||||| ||||||||||| | ||||||||||| |||   ||||||||||||| ||||| ||| |||||| | ||||||||   |  ||| || |||| |    
T  27187441 tttacacactcataattgatctgaattacaccattttaacaacataatcacacgtaatcaatcgaaatttcataaattcgtgactaaaatcacataatca 27187540  T
Q  196 cacataaacgatccaaatta 215  Q
    ||||||||||||||||||||    
T  27187541 cacataaacgatccaaatta 27187560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 27187653 - 27187714
Alignment:
Q  198 cataaacgatccaaattacacaaattcgttgttaaatacacataacacaaattcattcaaat 259  Q
    ||||||||||||||||||||| ||||||| | ||||||||||   |||||||||||| ||||    
T  27187653 cataaacgatccaaattacactaattcgtcgctaaatacacaatccacaaattcattaaaat 27187714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 33228471 - 33228410
Alignment:
Q  336 gttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccat 397  Q
    ||||||||||||||||||||||  |||||||  ||||||  |||||||||||||| ||||||    
T  33228471 gttaataaatattagacttcaacagatcggacgtaaagatgtaaaatgttattttcaaccat 33228410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 29671357 - 29671277
Alignment:
Q  334 acgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccattaatctaaatatgtaat 414  Q
    ||||||||| |||||| |||||||||||||  | |||||||  |||||  ||||||| ||||||||| ||||| |||||||    
T  29671357 acgttaatatatattacacttcaatggatcaaacataaagatgtaaaaatttatttttaaccattaacctaaaaatgtaat 29671277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 478
Target Start/End: Complemental strand, 426270 - 426208
Alignment:
Q  415 gagtagtgatatttgagcaaccatatgtgacaacttctcaattctctcttttcattggttaaaa 478  Q
    |||||||||||||||| ||||  |||||||||||||||   |||||||||||||||||| ||||    
T  426270 gagtagtgatatttgaacaact-tatgtgacaacttcttttttctctcttttcattggtcaaaa 426208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 24618590 - 24618673
Alignment:
Q  95 gtaatttttacactctcataattgacccgaattacaccagttt---aacataatcacacataatcgatccaaatttaacaaatt 175  Q
    ||||| ||| ||| ||||||||||| | ||||||| | |||||   ||||||||||||||||| |||||||||||  |||||||    
T  24618590 gtaatctttgcacactcataattgaactgaattacgcaagtttcacaacataatcacacataaacgatccaaattacacaaatt 24618673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 24618640 - 24618673
Alignment:
Q  190 taattacacataaacgatccaaattacacaaatt 223  Q
    |||| |||||||||||||||||||||||||||||    
T  24618640 taatcacacataaacgatccaaattacacaaatt 24618673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 24618828 - 24618873
Alignment:
Q  139 acataatcacacataatcgatccaaatttaacaaattcgttgttaa 184  Q
    |||||||||||||||| |||||||||||  |||||||||| |||||    
T  24618828 acataatcacacataaacgatccaaattacacaaattcgtcgttaa 24618873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 27187587 - 27187636
Alignment:
Q  190 taattacacataaacgatccaaattacacaaattcgttgttaaatacaca 239  Q
    |||| ||||||||| |||||||||||||||||||| |  |||||||||||    
T  27187587 taatgacacataaatgatccaaattacacaaattcatcattaaatacaca 27187636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 32076646 - 32076613
Alignment:
Q  199 ataaacgatccaaattacacaaattcgttgttaa 232  Q
    |||||||||||||||||||||||||||| |||||    
T  32076646 ataaacgatccaaattacacaaattcgtcgttaa 32076613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 283
Target Start/End: Complemental strand, 33228591 - 33228491
Alignment:
Q  183 aattacgtaattacacataaacgatccaaattacacaaattcgttgttaaatacacataa-cacaaattcattcaaattcaaagttagagacacaaattc 281  Q
    |||||| ||||  |||||||||| | |||||||| ||||||| | |||||||  |||||| |||||||||||| ||||||||   || ||||||||||||    
T  33228591 aattacataatctcacataaacggttcaaattacccaaattcatcgttaaatt-acataaacacaaattcattaaaattcaataatacagacacaaattc 33228493  T
Q  282 ga 283  Q
    ||    
T  33228492 ga 33228491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 484
Target Start/End: Complemental strand, 42996632 - 42996563
Alignment:
Q  415 gagtagtgatatttgagcaaccatatgtgacaacttctcaattctctcttttcattggttaaaattaatg 484  Q
    |||||||| ||||||| ||| || ||| ||||||||||   |||||||||||||||||| |||| |||||    
T  42996632 gagtagtgttatttgaacaatcaaatgagacaacttcttttttctctcttttcattggtcaaaaataatg 42996563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 5015891 - 5015958
Alignment:
Q  196 cacataaacgatccaaattacacaaattcgttgttaaat-acacataacacaaattcattcaaattcaa 263  Q
    |||||||||| || ||||||| ||||||| | ||||||| ||||| |||||||||||||| ||||||||    
T  5015891 cacataaacggtcaaaattacccaaattcatcgttaaattacaca-aacacaaattcattaaaattcaa 5015958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 30944991 - 30944924
Alignment:
Q  237 acataacacaaattcattcaaattcaaagttagagacacaaattcgaacacaatacattattacacgtt 305  Q
    |||||||||||||||||| ||||||||  |||  |||||||||| ||| ||| |||| |||||||||||    
T  30944991 acataacacaaattcatttaaattcaacattacggacacaaatt-gaaaacattacactattacacgtt 30944924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 89 - 232
Target Start/End: Original strand, 38810020 - 38810166
Alignment:
Q  89 tgatttgtaatttttacactctcataattgacccgaattacaccagtttaaca---taatcacacataatcgatccaaatttaacaaattcgttgttaat 185  Q
    |||||| |||| ||||||| || ||||||||   |||||||||||||||||||   |||||||||||||||||||||||||| |||||||||| ||||||    
T  38810020 tgatttctaatctttacacacttataattgatttgaattacaccagtttaacaacataatcacacataatcgatccaaatttcacaaattcgtcgttaat 38810119  T
Q  186 tacgtaattacacataaacgatccaaattacacaaattcgttgttaa 232  Q
     ||  ||| ||||||||||||||||||||||||||||| || |||||    
T  38810120 cacacaatcacacataaacgatccaaattacacaaatttgtcgttaa 38810166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 190 - 306
Target Start/End: Original strand, 38810192 - 38810309
Alignment:
Q  190 taattacacataaacgatccaaattacacaaattcgttgttaaat-acacataacacaaattcattcaaattcaaagttagagacacaaattcgaacaca 288  Q
    |||| ||||||||||||| |||||||||||||||  | ||||||| |||||||||||||||||||| ||||||||  ||  || ||||||||||||||||    
T  38810192 taatgacacataaacgattcaaattacacaaatttatcgttaaattacacataacacaaattcattaaaattcaacattgcaggcacaaattcgaacaca 38810291  T
Q  289 atacattattacacgtta 306  Q
     |||| ||||||| ||||    
T  38810292 ttacactattacatgtta 38810309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 25818662 - 25818599
Alignment:
Q  334 acgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccat 397  Q
    |||||||||||||| | ||||||| |||||||| |||||||  ||||| |||||||| ||||||    
T  25818662 acgttaataaatatcacacttcaacggatcggacataaagatgtaaaaggttattttcaaccat 25818599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 33401829 - 33401867
Alignment:
Q  187 acgtaattacacataaacgatccaaattacacaaattcg 225  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  33401829 acgtaatcacacataaacgatccaaatttcacaaattcg 33401867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 484
Target Start/End: Complemental strand, 34187411 - 34187365
Alignment:
Q  438 tatgtgacaacttctcaattctctcttttcattggttaaaattaatg 484  Q
    ||||||||||||||||  |||||||||||||||||| ||||| ||||    
T  34187411 tatgtgacaacttctcttttctctcttttcattggtcaaaatcaatg 34187365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 1181170 - 1181137
Alignment:
Q  190 taattacacataaacgatccaaattacacaaatt 223  Q
    |||| |||||||||||||||||||||||||||||    
T  1181170 taatgacacataaacgatccaaattacacaaatt 1181137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 12067672 - 12067639
Alignment:
Q  190 taattacacataaacgatccaaattacacaaatt 223  Q
    |||| |||||||||||||||||||||||||||||    
T  12067672 taatgacacataaacgatccaaattacacaaatt 12067639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 414
Target Start/End: Original strand, 38810335 - 38810376
Alignment:
Q  373 gacataaaatgttattttgaaccattaatctaaatatgtaat 414  Q
    |||||||| ||||||||||||||||||| ||||| |||||||    
T  38810335 gacataaagtgttattttgaaccattaacctaaacatgtaat 38810376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 199 - 307
Target Start/End: Complemental strand, 6374959 - 6374850
Alignment:
Q  199 ataaacgatccaaattacacaaattcgttgttaaat-acacataacacaaattcattcaaattcaaagttagagacacaaattcgaacacaatacattat 297  Q
    ||||||||||||||||||||||||||||  |||||| |||||||||||||||| ||| ||||||||  |||  |||| ||||||||||||| |||| |||    
T  6374959 ataaacgatccaaattacacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcgaacacattacactat 6374860  T
Q  298 tacacgttaa 307  Q
    ||||| ||||    
T  6374859 tacacattaa 6374850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 196 - 284
Target Start/End: Complemental strand, 16109745 - 16109654
Alignment:
Q  196 cacataaacgatccaa--attacacaaattcgttgttaaat-acacataacacaaattcattcaaattcaaagttagagacacaaattcgaa 284  Q
    ||||||||||||||||  ||||||||||||| | ||||||| |||||||||||||||||||| ||||||||  ||| |||||||||||||||    
T  16109745 cacataaacgatccaactattacacaaattcatcgttaaattacacataacacaaattcattaaaattcaacattacagacacaaattcgaa 16109654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 307
Target Start/End: Original strand, 8736267 - 8736378
Alignment:
Q  197 acataaacgatccaaattacacaaattcgttgttaaat-acacataacacaaattcattcaaattcaaagttagagacacaaattcgaacacaatacatt 295  Q
    ||||||| ||||||| ||| |||||||  | ||||||| ||| |||||||||||||||| ||||||||  ||| | |||||||||||||| || ||||||    
T  8736267 acataaatgatccaagttatacaaatttttcgttaaattacatataacacaaattcattaaaattcaacattacaaacacaaattcgaacgcattacatt 8736366  T
Q  296 attacacgttaa 307  Q
    ||||||||||||    
T  8736367 attacacgttaa 8736378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 286
Target Start/End: Complemental strand, 28197116 - 28197020
Alignment:
Q  190 taattacacataaacgatccaaattacacaaattcgttgttaaatacacataacacaaattcattcaaattcaaagttagagacacaaattcgaaca 286  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||| |   |||||||||||| |||| |||  ||| | |||||||||| ||||    
T  28197116 taattacacataaacgatccaaattacacaaattcgtcgtcaaatacatagtccacaaattcattaaaatgcaacattacatacacaaattcaaaca 28197020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 8736153 - 8736248
Alignment:
Q  139 acataatcacacataatcgatccaaatttaacaaattcgttgttaattacgtaattacacataaacgatccaaattacacaaattcgttgttaaat 234  Q
    |||||||| ||||||| ||||| |||||  |||||||||| |||||| ||  ||| ||||||||||||| ||||||||||||||| || |||||||    
T  8736153 acataatcgcacataaacgatcaaaattacacaaattcgtcgttaatcacacaatcacacataaacgattcaaattacacaaatttgtcgttaaat 8736248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 324 - 411
Target Start/End: Original strand, 8736362 - 8736449
Alignment:
Q  324 acattatgacacgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccattaatctaaatatgt 411  Q
    ||||||| |||||||||||||||||| ||||| ||| ||| || ||||| |  |||||||||||||| ||||||||| ||||||||||    
T  8736362 acattattacacgttaataaatattacacttcgatgaatcagacataaaaatgtaaaatgttattttcaaccattaacctaaatatgt 8736449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 213 - 307
Target Start/End: Complemental strand, 16109650 - 16109555
Alignment:
Q  213 ttacacaaattcgttgttaaat-acacataacacaaattcattcaaattcaaagttagagacacaaattcgaacacaatacattattacacgttaa 307  Q
    |||||||||||| | ||||||| |||||||||||||||||||| ||||||||  ||| ||||||||||||||| ||| ||||  ||||||| ||||    
T  16109650 ttacacaaattcatcgttaaattacacataacacaaattcattaaaattcaacattacagacacaaattcgaaaacattacacaattacactttaa 16109555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 6374858 - 6374776
Alignment:
Q  332 acacgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccattaatctaaatatgtaat 414  Q
    |||| ||||||||||||| ||||||| ||||| || |||||||  |||||| ||||||| ||||||||| ||||| |||||||    
T  6374858 acacattaataaatattacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaat 6374776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 414
Target Start/End: Complemental strand, 33937230 - 33937152
Alignment:
Q  336 gttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccattaatctaaatatgtaat 414  Q
    |||||||||||||| |||||||| || || | |||||||  |||||| ||||||| ||||||||||||||| |||||||    
T  33937230 gttaataaatattacacttcaatagaccgaacataaagaagtaaaatattattttcaaccattaatctaaacatgtaat 33937152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 18263318 - 18263367
Alignment:
Q  190 taattacacataaacgatccaaattacacaaattcgttgttaaatacaca 239  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||||||||    
T  18263318 taattacacataatcgatccaaattacataaattcgtcgttaaatacaca 18263367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 33937299 - 33937226
Alignment:
Q  234 tacacataacacaaattcattcaaattcaaagttagagacacaaattcgaacacaatacattattacacgttaa 307  Q
    ||||||||||||||||||||| ||||||||  ||| ||| ||||||| ||||||| |||| ||||||| |||||    
T  33937299 tacacataacacaaattcattaaaattcaacattacagagacaaatttgaacacattacactattacatgttaa 33937226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 397
Target Start/End: Complemental strand, 38740073 - 38740008
Alignment:
Q  332 acacgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccat 397  Q
    |||||||||||||||||||||||||| |||||||| |||||||  |||||  ||||||| ||||||    
T  38740073 acacgttaataaatattagacttcaacggatcggacataaagatgtaaaagattattttcaaccat 38740008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 232
Target Start/End: Complemental strand, 6375143 - 6375049
Alignment:
Q  138 aacataatcacacataatcgatccaaatttaacaaattcgttgttaattacgtaattacacataaacgatccaaattacacaaattcgttgttaa 232  Q
    ||||||||| ||||||| ||||| |||||  |||||||  | |||||| || |||| |||||||||||||| |||||| ||||||| || |||||    
T  6375143 aacataatcgcacataaacgatctaaattacacaaatttatcgttaataacataatcacacataaacgatctaaattagacaaatttgtcgttaa 6375049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 33937449 - 33937407
Alignment:
Q  190 taattacacataaacgatccaaattacacaaattcgttgttaa 232  Q
    |||| |||||||||||||||||||||||||||||||| |||||    
T  33937449 taatgacacataaacgatccaaattacacaaattcgtcgttaa 33937407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 307
Target Start/End: Complemental strand, 17344552 - 17344428
Alignment:
Q  183 aattacgtaattacacataaacgatccaaattacacaaattcgttgttaaatacacataac-acaaattcattcaaattcaaagttagagacacaaattc 281  Q
    |||||| ||||  |||||||| | || ||||||||||||||| | |||||||  | ||||| ||||||||||| ||||||||   || ||||||||||||    
T  17344552 aattacataatctcacataaatggtcaaaattacacaaattcatcgttaaatt-atataaccacaaattcattaaaattcaacaatacagacacaaattc 17344454  T
Q  282 gaacacaatacattattacacgttaa 307  Q
    ||||| | |||  |||||||||||||    
T  17344453 gaacaaattacgatattacacgttaa 17344428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 20421609 - 20421576
Alignment:
Q  206 atccaaattacacaaattcgttgttaaatacaca 239  Q
    ||||||||||||||||||||||||||||||||||    
T  20421609 atccaaattacacaaattcgttgttaaatacaca 20421576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 478
Target Start/End: Complemental strand, 42909890 - 42909826
Alignment:
Q  414 tgagtagtgatatttgagcaaccatatgtgacaacttctcaattctctcttttcattggttaaaa 478  Q
    ||||||||| ||||||| |||||||||| ||||||||||    ||||||||||||||||| ||||    
T  42909890 tgagtagtgttatttgaacaaccatatgagacaacttcttttctctctcttttcattggtcaaaa 42909826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 484
Target Start/End: Complemental strand, 10232643 - 10232600
Alignment:
Q  441 gtgacaacttctcaattctctcttttcattggttaaaattaatg 484  Q
    ||||||||||||   |||||||||||||||||||||||||||||    
T  10232643 gtgacaacttcttttttctctcttttcattggttaaaattaatg 10232600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 484
Target Start/End: Original strand, 12661874 - 12661917
Alignment:
Q  441 gtgacaacttctcaattctctcttttcattggttaaaattaatg 484  Q
    ||||||||||||   |||||||||||||||||||||||||||||    
T  12661874 gtgacaacttcttttttctctcttttcattggttaaaattaatg 12661917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 34016393 - 34016431
Alignment:
Q  187 acgtaattacacataaacgatccaaattacacaaattcg 225  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  34016393 acgtaatcacacataaacgatccaaatttcacaaattcg 34016431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 413
Target Start/End: Complemental strand, 16109563 - 16109482
Alignment:
Q  332 acacgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccattaatctaaatatgtaa 413  Q
    |||| ||||||||||||| ||||||| ||||| || |||||||   ||||||||||| | |||||| |  ||||||||||||    
T  16109563 acactttaataaatattacacttcaacggatcagacataaagatggaaaatgttattctcaaccatcacgctaaatatgtaa 16109482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 397
Target Start/End: Complemental strand, 17344436 - 17344371
Alignment:
Q  332 acacgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccat 397  Q
    |||||||||||||||||| ||||||||||||| ||  ||||||   ||| ||||||||| ||||||    
T  17344436 acacgttaataaatattacacttcaatggatcagacgtaaagattcaaagtgttattttcaaccat 17344371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 397
Target Start/End: Original strand, 20883529 - 20883594
Alignment:
Q  332 acacgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccat 397  Q
    |||||||||||||||||| | ||||| |||| ||| |||||||  ||||| |||||||| ||||||    
T  20883529 acacgttaataaatattaaatttcaacggattggacataaagatgtaaaaggttattttcaaccat 20883594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 307
Target Start/End: Original strand, 26505993 - 26506117
Alignment:
Q  183 aattacgtaattacacataaacgatccaaattacacaaattcgttgttaaatacacataa-cacaaattcattcaaattcaaagttagagacacaaattc 281  Q
    |||||| ||||  |||||||||| |  ||| ||||||||||| | |||||||| |||||| |||||||||||| ||||||||   ||  || ||||||||    
T  26505993 aattacataatctcacataaacggtaaaaaatacacaaattcatcgttaaata-acataaacacaaattcattaaaattcaacaatacggatacaaattc 26506091  T
Q  282 gaacacaatacattattacacgttaa 307  Q
    ||||| | |||| ||||||| |||||    
T  26506092 gaacaaattacactattacatgttaa 26506117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 232
Target Start/End: Complemental strand, 28197292 - 28197190
Alignment:
Q  138 aacataatcacacataatcgatccaaatttaacaaattcgttgtt--------aattacgtaattacacataaacgatccaaattacacaaattcgttgt 229  Q
    |||||||||| ||||||||||||||||||  ||||||||||  ||        ||| || |||| ||||||||| |||| ||||||||||||||||| ||    
T  28197292 aacataatcatacataatcgatccaaattacacaaattcgtcattgattacacaatcacataatcacacataaatgatctaaattacacaaattcgtcgt 28197193  T
Q  230 taa 232  Q
    |||    
T  28197192 taa 28197190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 397
Target Start/End: Original strand, 35049334 - 35049399
Alignment:
Q  332 acacgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccat 397  Q
    |||| ||||||||||||| ||||||| |||||||| |||||||  |||||  ||||||| ||||||    
T  35049334 acacattaataaatattacacttcaacggatcggacataaagatgtaaaagattattttcaaccat 35049399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 471
Target Start/End: Complemental strand, 471984 - 471928
Alignment:
Q  415 gagtagtgatatttgagcaaccatatgtgacaacttctcaattctctcttttcattg 471  Q
    |||||||| ||||||| ||| |||||| ||||||||||   ||||||||||||||||    
T  471984 gagtagtgttatttgaacaatcatatgagacaacttcttttttctctcttttcattg 471928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 16109809 - 16109773
Alignment:
Q  190 taattacacataaacgatccaaattacacaaattcgt 226  Q
    |||| |||||||||||||||||||||||| |||||||    
T  16109809 taatgacacataaacgatccaaattacaccaattcgt 16109773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 41784909 - 41784827
Alignment:
Q  332 acacgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccattaatctaaatatgtaat 414  Q
    ||||||| |||||||||| ||||||||||||| || |||||||  |||||||||||||| ||||||||| ||||| |||||||    
T  41784909 acacgttcataaatattacacttcaatggatcagacataaagatgtaaaatgttattttcaaccattaaactaaacatgtaat 41784827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 41784974 - 41784903
Alignment:
Q  234 tacacataacacaaattcattcaaattcaaagttagagacacaaattcgaacacaatacattattacacgtt 305  Q
    ||||||||||||||||||||| ||||||||  |||  |||||||||||||||||| |||| |||||||||||    
T  41784974 tacacataacacaaattcatttaaattcaacattaaggacacaaattcgaacacattacactattacacgtt 41784903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 1938853 - 1938792
Alignment:
Q  336 gttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccat 397  Q
    |||||||||||||| |||||||||||||||| |||||||  ||||| |||||||| ||||||    
T  1938853 gttaataaatattacacttcaatggatcggacataaagatgtaaaaggttattttcaaccat 1938792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 21178672 - 21178639
Alignment:
Q  206 atccaaattacacaaattcgttgttaaatacaca 239  Q
    ||||||||||||||||||||||||||||||||||    
T  21178672 atccaaattacacaaattcgttgttaaatacaca 21178639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 41785124 - 41785088
Alignment:
Q  190 taattacacataaacgatccaaattacacaaattcgt 226  Q
    |||| ||||||||||||||||||||||||||||||||    
T  41785124 taatcacacataaacgatccaaattacacaaattcgt 41785088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 50006869 - 50006927
Alignment:
Q  339 aataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccat 397  Q
    ||||||||||| ||||||| |||||||| |||||||  ||||| |||||||| ||||||    
T  50006869 aataaatattacacttcaacggatcggacataaagatgtaaaaggttattttcaaccat 50006927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 30531316 - 30531234
Alignment:
Q  332 acacgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccattaatctaaatatgtaat 414  Q
    |||||| ||||||||||| ||||||| |||||||| |||||||  |||||||||||||| ||||||||| ||||| |||||||    
T  30531316 acacgtaaataaatattacacttcaacggatcggacataaagatgtaaaatgttattttcaaccattaacctaaacatgtaat 30531234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 32125083 - 32125151
Alignment:
Q  196 cacataaacgatccaaattacacaaattcgttgttaaa-tacacataacacaaattcattcaaattcaa 263  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||||||| |||||| ||| ||||||||    
T  32125083 cacataaacgaaccaaattacacaaattcgtcgttaaactacacataacccaaattgattaaaattcaa 32125151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 252
Target Start/End: Complemental strand, 9194051 - 9193989
Alignment:
Q  190 taattacacataaacgatccaaattacacaaattcgttgttaaatacacataacacaaattca 252  Q
    |||| |||||||| ||||| ||||||||||||||||| ||||||||||||   ||||||||||    
T  9194051 taatcacacataatcgatctaaattacacaaattcgtcgttaaatacacaatccacaaattca 9193989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 9194056 - 9194009
Alignment:
Q  137 taacataatcacacataatcgatccaaatttaacaaattcgttgttaa 184  Q
    |||||||||||||||||||||||| |||||  |||||||||| |||||    
T  9194056 taacataatcacacataatcgatctaaattacacaaattcgtcgttaa 9194009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 27934385 - 27934319
Alignment:
Q  241 aacacaaattcattcaaattcaaagttagagacacaaattcgaacacaatacattattacacgttaa 307  Q
    |||||||||||||| ||||||||   || ||||||||||| ||||||| |||| |||||||| ||||    
T  27934385 aacacaaattcattaaaattcaacaatacagacacaaatttgaacacattacactattacacattaa 27934319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 30531381 - 30531311
Alignment:
Q  234 tacacataacacaaattcattcaaattcaaagttagagacacaaattcgaacacaatacattattacacgt 304  Q
    ||||||| ||||||||||||| ||||||||  ||| | ||| |||||| |||||| |||| ||||||||||    
T  30531381 tacacatgacacaaattcattaaaattcaacattacaaacataaattcaaacacattacactattacacgt 30531311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 30531646 - 30531562
Alignment:
Q  95 gtaatttttacactctcataattgacccgaattacaccagttt---aacataatcacacataatcgatccaaatttaacaaattc 176  Q
    ||||| ||||||| || |||||||| |||||||||  ||||||   ||||||||| ||||||| |||||||||||  ||||||||    
T  30531646 gtaatctttacacactaataattgatccgaattacgtcagtttcacaacataatcgcacataaacgatccaaattacacaaattc 30531562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 397
Target Start/End: Original strand, 20514194 - 20514259
Alignment:
Q  332 acacgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccat 397  Q
    |||||||||||||||||| ||||||||||||| ||  |||| |  ||||| |||||||| ||||||    
T  20514194 acacgttaataaatattacacttcaatggatctgacgtaaatatgtaaaaggttattttcaaccat 20514259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 30531590 - 30531562
Alignment:
Q  196 cacataaacgatccaaattacacaaattc 224  Q
    |||||||||||||||||||||||||||||    
T  30531590 cacataaacgatccaaattacacaaattc 30531562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 332 - 414
Target Start/End: Original strand, 45736 - 45818
Alignment:
Q  332 acacgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccattaatctaaatatgtaat 414  Q
    |||||| |||| |||||| ||||||||||| |||| | |||||  |||||||||||||| ||||||||| ||||| |||||||    
T  45736 acacgtcaatacatattacacttcaatggagcggacacaaagatgtaaaatgttattttcaaccattaacctaaacatgtaat 45818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 332 - 390
Target Start/End: Original strand, 22728379 - 22728437
Alignment:
Q  332 acacgttaataaatattagacttcaatggatcggagataaagacataaaatgttatttt 390  Q
    |||||||||||||||||| ||||||| |||||||| |||||||  ||||||||||||||    
T  22728379 acacgttaataaatattacacttcaacggatcggacataaagatgtaaaatgttatttt 22728437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 28759060 - 28758989
Alignment:
Q  234 tacacataacacaaattcattcaaattcaaagttagagacacaaattcgaacacaatacattattacacgtt 305  Q
    ||||||||||||||||||||| |||||||    || ||||||||||||||||||| || | |||||||||||    
T  28759060 tacacataacacaaattcatttaaattcatcactatagacacaaattcgaacacattatactattacacgtt 28758989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 483
Target Start/End: Original strand, 37085120 - 37085190
Alignment:
Q  415 gagtagtgatatttgagcaaccatat--gtgacaacttctcaattctctcttttcattggttaaaattaat 483  Q
    |||||||||||||||| |||| ||||  ||||||||||||   ||||||||||| |||||| |||||||||    
T  37085120 gagtagtgatatttgaacaactatatatgtgacaacttcttttttctctctttttattggtcaaaattaat 37085190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 19478974 - 19479008
Alignment:
Q  190 taattacacataaacgatccaaattacacaaattc 224  Q
    |||| ||||||||||||||||||||||||||||||    
T  19478974 taatcacacataaacgatccaaattacacaaattc 19479008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 28759210 - 28759168
Alignment:
Q  190 taattacacataaacgatccaaattacacaaattcgttgttaa 232  Q
    |||| ||| |||||||||||||||||||||||||||| |||||    
T  28759210 taatcacatataaacgatccaaattacacaaattcgtcgttaa 28759168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 414
Target Start/End: Complemental strand, 36342512 - 36342434
Alignment:
Q  336 gttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccattaatctaaatatgtaat 414  Q
    |||||||||||||| | |||||||||| | | | |||||  ||| |||||||||| ||||||||| ||||| |||||||    
T  36342512 gttaataaatattacatttcaatggatagaacacaaagatgtaatatgttatttttaaccattaacctaaacatgtaat 36342434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 397
Target Start/End: Complemental strand, 35004359 - 35004294
Alignment:
Q  332 acacgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccat 397  Q
    |||||||||||||||||| |||||||  ||||||| |||||||  || ||||||||| | ||||||    
T  35004359 acacgttaataaatattacacttcaacagatcggacataaagatgtagaatgttattctcaaccat 35004294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 307
Target Start/End: Complemental strand, 1031343 - 1031218
Alignment:
Q  183 aattacgtaattacacataaacgatccaaattacacaaattcgttgttaaatacacat-aacacaaattcattcaaattcaaagttagagacacaaattc 281  Q
    |||||| ||||  |||||||||| || ||||||| ||||||| | |||||||  |||| |||||||||||||| |||||||| | ||  |||||||||||    
T  1031343 aattacataatctcacataaacggtcaaaattacccaaattcatcgttaaatt-acatcaacacaaattcattaaaattcaacgatacggacacaaattc 1031245  T
Q  282 -gaacacaatacattattacacgttaa 307  Q
     ||| ||| |||| |||||||||||||    
T  1031244 ggaaaacattacactattacacgttaa 1031218  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 7647961 - 7648023
Alignment:
Q  190 taattacacataaacgatccaaattacacaaattcgttgttaaatacacataacacaaattca 252  Q
    |||| ||||||||| ||| |||||||||||||||||| ||||||||||||   ||||||||||    
T  7647961 taatcacacataaaggatacaaattacacaaattcgtcgttaaatacacaatccacaaattca 7648023  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 332 - 397
Target Start/End: Complemental strand, 1031226 - 1031161
Alignment:
Q  332 acacgttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccat 397  Q
    |||||||||||||||||| ||||||| | |||||| |||||||  ||||| |||||||| ||||||    
T  1031226 acacgttaataaatattacacttcaacgcatcggacataaagatgtaaaaggttattttcaaccat 1031161  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 414
Target Start/End: Original strand, 7648080 - 7648158
Alignment:
Q  336 gttaataaatattagacttcaatggatcggagataaagacataaaatgttattttgaaccattaatctaaatatgtaat 414  Q
    |||||||||||||| ||||||||||| || | |  || | ||||||||||||||| || |||||| ||||| |||||||    
T  7648080 gttaataaatattacacttcaatggagcgaacacgaatatataaaatgttattttcaagcattaacctaaacatgtaat 7648158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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