View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11708_high_17 (Length: 364)

Name: NF11708_high_17
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11708_high_17
NF11708_high_17
[»] chr7 (8 HSPs)
chr7 (177-342)||(3312552-3312718)
chr7 (259-342)||(3310934-3311017)
chr7 (177-225)||(3310866-3310914)
chr7 (236-292)||(16250385-16250442)
chr7 (241-325)||(13695830-13695916)
chr7 (241-325)||(13696038-13696124)
chr7 (266-353)||(18147606-18147697)
chr7 (172-225)||(34706801-34706856)
[»] chr1 (3 HSPs)
chr1 (168-354)||(18513821-18514012)
chr1 (266-340)||(12786237-12786315)
chr1 (241-271)||(24007325-24007355)
[»] chr3 (11 HSPs)
chr3 (168-289)||(32657267-32657390)
chr3 (185-339)||(3592994-3593149)
chr3 (172-354)||(18705525-18705707)
chr3 (228-342)||(18534434-18534549)
chr3 (168-343)||(3262264-3262442)
chr3 (193-292)||(24177926-24178025)
chr3 (241-341)||(3483604-3483706)
chr3 (176-299)||(32658576-32658705)
chr3 (243-313)||(30993280-30993352)
chr3 (285-353)||(15777344-15777412)
chr3 (241-353)||(3290608-3290723)
[»] scaffold0281 (1 HSPs)
scaffold0281 (241-353)||(1821-1935)
[»] scaffold0088 (1 HSPs)
scaffold0088 (177-348)||(35497-35673)
[»] chr4 (7 HSPs)
chr4 (176-353)||(25126238-25126416)
chr4 (232-353)||(19611924-19612046)
chr4 (190-318)||(14645677-14645805)
chr4 (175-354)||(18552314-18552493)
chr4 (294-353)||(23974154-23974213)
chr4 (168-291)||(44277959-44278085)
chr4 (266-340)||(11153814-11153891)
[»] chr8 (6 HSPs)
chr8 (172-353)||(40391280-40391465)
chr8 (193-275)||(42147389-42147470)
chr8 (241-353)||(17290600-17290715)
chr8 (266-321)||(9883636-9883692)
chr8 (315-353)||(42147468-42147506)
chr8 (275-348)||(6465713-6465787)
[»] chr2 (3 HSPs)
chr2 (251-353)||(16093511-16093615)
chr2 (289-353)||(32623604-32623669)
chr2 (294-353)||(27386940-27387000)
[»] scaffold0505 (1 HSPs)
scaffold0505 (175-258)||(4709-4793)
[»] scaffold0005 (1 HSPs)
scaffold0005 (244-318)||(171485-171558)
[»] scaffold0094 (1 HSPs)
scaffold0094 (242-318)||(48232-48310)
[»] scaffold0019 (1 HSPs)
scaffold0019 (288-353)||(182968-183034)
[»] scaffold0815 (1 HSPs)
scaffold0815 (168-269)||(1252-1352)
[»] chr5 (2 HSPs)
chr5 (266-339)||(39176442-39176519)
chr5 (275-340)||(39435973-39436039)
[»] chr6 (3 HSPs)
chr6 (205-340)||(9548696-9548833)
chr6 (266-353)||(19769032-19769123)
chr6 (243-292)||(19566946-19566996)
[»] scaffold0323 (1 HSPs)
scaffold0323 (241-305)||(16222-16288)


Alignment Details
Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 177 - 342
Target Start/End: Original strand, 3312552 - 3312718
Alignment:
Q  177 aattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaattaaaagaaa-acaagcccttcactacccatatgttcataaaacccttatg 275  Q
    ||||||||||||||| |||||| |||||||||||||||| |||||||||  || | ||| |||| |||||||||||||| || |||||| |||||||||     
T  3312552 aattagagcacaaatataacataaattcattaaaagatcgtgaaaacaaggaagaaaaacacaaacccttcactacccacatattcatacaacccttata 3312651  T
Q  276 tgaatagagactcccccatacctctagtttgcagaattgatgattttctatggtgaaatctctctct 342  Q
    ||||||||||||||||| || ||||||||||| |||||||||| || ||| |||  |||||||||||    
T  3312652 tgaatagagactcccccttatctctagtttgccgaattgatgacttcctacggttgaatctctctct 3312718  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 342
Target Start/End: Original strand, 3310934 - 3311017
Alignment:
Q  259 ttcataaaacccttatgtgaatagagactcccccatacctctagtttgcagaattgatgattttctatggtgaaatctctctct 342  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||  |||||||||| || |||  ||  |||||||||||    
T  3310934 ttcatacaacccttatatgaatagagactcccccttacctctagtttgtcgaattgatgacttcctactgttgaatctctctct 3311017  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 3310866 - 3310914
Alignment:
Q  177 aattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaa 225  Q
    |||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  3310866 aattagagcataaatttaacataaattcattaaaagatcgtgaaaacaa 3310914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 16250442 - 16250385
Alignment:
Q  236 acaagcccttcactacccatatgttcataaaacccttatg-tgaatagagactccccc 292  Q
    |||| |||||| ||||||| ||||||||| |||||||||| |||||||||||||||||    
T  16250442 acaaacccttcgctacccacatgttcatacaacccttatgatgaatagagactccccc 16250385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 13695830 - 13695916
Alignment:
Q  241 cccttcactacccatatgttcataaaacccttatg-tgaatagagactc-ccccatacctctagtttgcagaattgatgattttcta 325  Q
    |||||||||||| ||||||||||  | ||||| || |||| | |||||| |||| |||||||||||||| |||||||||| ||||||    
T  13695830 cccttcactaccgatatgttcatgcatcccttgtggtgaagatagactctccccttacctctagtttgccgaattgatgaatttcta 13695916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 13696038 - 13696124
Alignment:
Q  241 cccttcactacccatatgttcataaaacccttatg-tgaatagagactc-ccccatacctctagtttgcagaattgatgattttcta 325  Q
    |||||||||||||||||||||||  | ||||| || |||| | |||||| |||| | |||||||||||| |||||||||| ||||||    
T  13696038 cccttcactacccatatgttcatgcatcccttgtgatgaagatagactctccccttccctctagtttgccgaattgatgaatttcta 13696124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 353
Target Start/End: Complemental strand, 18147697 - 18147606
Alignment:
Q  266 aacccttatg-tgaatagagactccccca--tacctctagtttgcagaatt-gatgattttctatggtgaaatctctctctaggttcatctc 353  Q
    |||||||||| |||||||||||||||||   ||||||||||| | |||||| ||||| || ||| || ||||||||||||||| ||| ||||    
T  18147697 aacccttatgatgaatagagactccccccattacctctagttcggagaatttgatgaattcctacggcgaaatctctctctagattcttctc 18147606  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 34706801 - 34706856
Alignment:
Q  172 caacaaattagagcacaaatttaacatg--aattcattaaaagatcatgaaaacaa 225  Q
    ||||||| |||| ||||||||||||||   ||||||||||||||| ||||||||||    
T  34706801 caacaaagtagaacacaaatttaacatctcaattcattaaaagattatgaaaacaa 34706856  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 168 - 354
Target Start/End: Complemental strand, 18514012 - 18513821
Alignment:
Q  168 acaacaacaaattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaattaaaagaaaac---aagcccttcactacccatatgttcata 264  Q
    |||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||  | |||||||    || || ||||||||| |||||||||||    
T  18514012 acaacaacaaattacagcataaatttaacatgaatttattaaaagatcatgaaaacaaa-agaagaaaatcataaacctttcactacctatatgttcata 18513914  T
Q  265 aaacccttatg-tgaatagagact-cccccatacctctagttt-gcagaattgatgattttctatggtgaaatctctctctaggttcatctca 354  Q
     |||||||||| |||||||||||| ||||| ||||| |||||| ||  |||||||||||| ||||| | |||||||||||||||||| |||||    
T  18513913 caacccttatggtgaatagagacttcccccttacctttagttttgcgaaattgatgatttcctatgttaaaatctctctctaggttcttctca 18513821  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 340
Target Start/End: Original strand, 12786237 - 12786315
Alignment:
Q  266 aacccttatg-tgaatagagactccccc--atacctctagtttgcagaa-ttgatgattttctatggtgaaatctctct 340  Q
    |||||||||| |||||||||||||||||   ||||||||||||| |||| ||||||| || ||| ||||||||||||||    
T  12786237 aacccttatgatgaatagagactccccccattacctctagtttggagaatttgatgaattcctacggtgaaatctctct 12786315  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Complemental strand, 24007355 - 24007325
Alignment:
Q  241 cccttcactacccatatgttcataaaaccct 271  Q
    |||||||||||||||||||||||||||||||    
T  24007355 cccttcactacccatatgttcataaaaccct 24007325  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 168 - 289
Target Start/End: Complemental strand, 32657390 - 32657267
Alignment:
Q  168 acaacaacaaattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaattaa-aagaaa-acaagcccttcactacccatatgttcataa 265  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  || |||||| |||    ||| ||||||||||||||||||     
T  32657390 acaacaaccaattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaaagaagaagaaacacagattctttactacccatatgttcatac 32657291  T
Q  266 aacccttatgtgaatagagactcc 289  Q
    ||||||||||||||||||||||||    
T  32657290 aacccttatgtgaatagagactcc 32657267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 185 - 339
Target Start/End: Original strand, 3592994 - 3593149
Alignment:
Q  185 cacaaatttaacatgaattcattaaaagatcatgaaaa-caattaaaagaaaacaagcccttcactacccatatgttcataaaacccttatg-tgaatag 282  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||  | | || |||| |||||| | |||| ||||| |||||||||| |||||||    
T  3592994 cacaaatttaacatgaattcattaaaagatcatgaaaaacaatgtaaa--acataaaccctgcactacacgtatgatcatacaacccttatgatgaatag 3593091  T
Q  283 agactc-ccccatacctctagtttgcagaattgatgattttctatggtgaaatctctc 339  Q
    |||||| |||| |||||||||||||| ||||||||||||| ||| || ||||||||||    
T  3593092 agactctccccttacctctagtttgccgaattgatgatttcctacggagaaatctctc 3593149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 172 - 354
Target Start/End: Complemental strand, 18705707 - 18705525
Alignment:
Q  172 caacaaattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaattaaaagaaa-acaagcccttcactacccatatgttcataaaaccc 270  Q
    |||||| ||||| ||  |||||||||| |||| || |||||||||||||||||   |||| ||| |||| ||||||||||||| |||||||||| ||||     
T  18705707 caacaatttagaacatgaatttaacatcaatttatcaaaagatcatgaaaacag--aaaataaacacaaacccttcactacccttatgttcatacaacc- 18705611  T
Q  271 ttatg-tgaatagagactcccccatacctctagtttgcagaa-ttgatgattttctatggtgaaatctctctctaggttcatctca 354  Q
    ||||| | ||||||||||||||||||||||||||||   ||| ||||||||||  |||||||||||||||||||| |||| |||||    
T  18705610 ttatggtaaatagagactcccccatacctctagttttacgaaattgatgatttcatatggtgaaatctctctctacgttcttctca 18705525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 228 - 342
Target Start/End: Complemental strand, 18534549 - 18534434
Alignment:
Q  228 aaaagaaaacaagcccttcactacccatatgttcataaaacccttatg-tgaatagagactcccccatacctctag-tttgcagaattgatgattttcta 325  Q
    |||| |||| || |||||||||||| ||||||||||| || ||||||| ||||||||||||||||| ||||||||| |||||  |||||||||||| |||    
T  18534549 aaaaaaaaaaaaacccttcactacc-atatgttcatacaatccttatggtgaatagagactcccccttacctctagttttgcgaaattgatgatttccta 18534451  T
Q  326 tggtgaaatctctctct 342  Q
    ||||  |||||||||||    
T  18534450 tggttgaatctctctct 18534434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 343
Target Start/End: Complemental strand, 3262442 - 3262264
Alignment:
Q  168 acaacaacaaattagagcacaaatttaacatgaattcatt-aaaagatcatgaaaacaattaaaagaaaacaag-cccttcactacccatatgttcataa 265  Q
    |||||| ||||||||||||  ||||| ||||||||||||| |||| ||||| |||| || |||   |||||||  ||||||||||||||||||||||||     
T  3262442 acaacatcaaattagagcatgaatttgacatgaattcattgaaaaaatcataaaaaaaaataatgaaaaacaaaacccttcactacccatatgttcatac 3262343  T
Q  266 aacccttat-gtgaatagagactcccccatacctctagtttgcagaat-tgatgattttctatggtgaaatctctctcta 343  Q
    || |||||| |||||||||||| | ||| ||||| ||||||  ||||| | ||||||| ||| | |||||||||||||||    
T  3262342 aatccttatggtgaatagagacgctcccttacct-tagtttatagaatctaatgatttcctacgatgaaatctctctcta 3262264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 193 - 292
Target Start/End: Complemental strand, 24178025 - 24177926
Alignment:
Q  193 taacatgaattcattaaaagatcatgaaaa-caattaaaagaaaacaagcccttcactacccatatgttcataaaacccttat-gtgaatagagactccc 290  Q
    |||||||||||||||||||||||||||||| ||||  |||  ||| |  |||||||||||||||||||||||| || |||||| ||||||||||||||||    
T  24178025 taacatgaattcattaaaagatcatgaaaaacaatggaaaataaaaa--cccttcactacccatatgttcatagaatccttatggtgaatagagactccc 24177928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 3483604 - 3483706
Alignment:
Q  241 cccttcactacccatatgttcataaaacccttatgtgaatagagactcc-cccatacctctagtttgcagaa-ttgatgattttctatggtgaaatctct 338  Q
    |||||||||||||||| | ||||| ||||||||||| || ||||||||| ||| ||||||||||||| |||| ||||||| |||||||| | | ||||||    
T  3483604 cccttcactacccatacgatcatacaacccttatgtaaacagagactcctcccttacctctagtttggagaatttgatgaatttctatgataatatctct 3483703  T
Q  339 ctc 341  Q
    |||    
T  3483704 ctc 3483706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 299
Target Start/End: Original strand, 32658576 - 32658705
Alignment:
Q  176 aaattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaattaaaagaaaa------caagcccttcactacccatatgttcataaaacc 269  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| ||  |||  ||||      ||| |  |||||||  |||||||||||| ||||    
T  32658576 aaattagagcacgaatttaaaatgaattcattaaaagatcatgaaaataaaaaaataaaaaataacgcaaactgttcactaatcatatgttcatacaacc 32658675  T
Q  270 cttatgtgaatagagactcccccatacctc 299  Q
    |||| ||||||||||||| |||| ||||||    
T  32658676 cttacgtgaatagagacttccccttacctc 32658705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 30993352 - 30993280
Alignment:
Q  243 cttcactacccatatgttcataaaacccttat-gtgaatagagact-cccccatacctctagtttgcagaatt 313  Q
    |||| ||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||||| ||||||    
T  30993352 cttccctacccatatgttcatacaacccttatggtgaatagagactccccccttacctctagtttggagaatt 30993280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 353
Target Start/End: Complemental strand, 15777412 - 15777344
Alignment:
Q  285 actcccccatacctctagtttgcagaattgatgattttctatggtgaaatctctctctaggttcatctc 353  Q
    |||||||| ||||||||||||||| || |||| | || ||| |||||||||||||||||||||| ||||    
T  15777412 actcccccttacctctagtttgcaaaagtgataaattcctacggtgaaatctctctctaggttcttctc 15777344  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 353
Target Start/End: Original strand, 3290608 - 3290723
Alignment:
Q  241 cccttcactacccatatgttcataaaacccttatg----tgaatagagactcccccatacctctagttt-gcagaattgatgattttctatggtgaaatc 335  Q
    |||||||||| ||||||||||||| | ||| ||||    |||||| |||||||||| ||| |||||||| ||  |||||||||||| ||| ||| |||||    
T  3290608 cccttcactatccatatgttcatacagcccctatgatgatgaata-agactcccccttac-tctagttttgcgaaattgatgatttcctacggttaaatc 3290705  T
Q  336 tctctctaggttcatctc 353  Q
     |||||||||||| ||||    
T  3290706 cctctctaggttcttctc 3290723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 241 - 353
Target Start/End: Original strand, 1821 - 1935
Alignment:
Q  241 cccttcactacccatatgttcataaaacccttatg-tgaatagagactcccc-catacctctagtttgcagaattgatgattttctatggtgaaatctct 338  Q
    |||||| ||||| |||| |||||| |||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  1821 cccttcgctacctatatattcatacaacccttatggtaaatagagactccccccatacctctagtttgcagaattgatgatttcctacggtgaaatctct 1920  T
Q  339 ctctaggttcatctc 353  Q
    || ||||||| ||||    
T  1921 ctgtaggttcttctc 1935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 348
Target Start/End: Complemental strand, 35673 - 35497
Alignment:
Q  177 aattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaat--taaaagaaaacaagcccttcactacccatatgttcataaaacccttat 274  Q
    ||||||||||||||||||||||||||||  ||||||||| | | || |||  ||||| |||  || || ||||||||||||||||| ||| ||||||||     
T  35673 aattagagcacaaatttaacatgaattcggtaaaagatcgtaagaaaaataataaaaaaaataaaacctttcactacccatatgttgatacaacccttac 35574  T
Q  275 g-tgaatagagact-cccccatacctctagtttgcagaa-ttgatgattttctatggtgaaatctctctctaggttc 348  Q
    | |||||||||||| ||||| |||||||||||||  ||| ||||||| || ||| ||||||||||||||||| ||||    
T  35573 gctgaatagagactccccccttacctctagtttgtcgaatttgatgagttcctacggtgaaatctctctctacgttc 35497  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 353
Target Start/End: Complemental strand, 25126416 - 25126238
Alignment:
Q  176 aaattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaattaaaagaaa-acaagcccttcactacccatatgttcataaaacccttat 274  Q
    |||||||||||| |||| |||||||||| |||||||||||| ||||||||  || | ||| | ||  ||||||||||| ||||||| ||| ||||||||     
T  25126416 aaattagagcacgaattgaacatgaatttattaaaagatcaagaaaacaaagaagaaaaacataaatccttcactacctatatgtttatacaaccctta- 25126318  T
Q  275 gtgaatagagact-cccccatacctctag-tttgcagaattgatgattttctatggtgaaatctctctctaggttcatctc 353  Q
     |||||||||||| ||||||||||||||| |||||  |||||||||||| ||| | | |||| ||||||||||||| ||||    
T  25126317 -tgaatagagactccccccatacctctagttttgcgaaattgatgatttcctacgttcaaatttctctctaggttcttctc 25126238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 353
Target Start/End: Complemental strand, 19612046 - 19611924
Alignment:
Q  232 gaaaacaagcccttcactacccatatgttcataaaacccttatgtgaatagagactccccc-atacctctagttt-gcagaattgatgattttctatggt 329  Q
    ||||||||  ||||||||||| ||||||||||  |||| |||||||||||||||||||||| ||||||||| ||| ||  |||||||||||  ||| | |    
T  19612046 gaaaacaaaaccttcactacctatatgttcatgcaacc-ttatgtgaatagagactccccccatacctctaattttgcgaaattgatgattccctacgat 19611948  T
Q  330 gaaatctctctctaggttcatctc 353  Q
    ||||||||||||||||||| ||||    
T  19611947 gaaatctctctctaggttcttctc 19611924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 318
Target Start/End: Original strand, 14645677 - 14645805
Alignment:
Q  190 atttaacatgaattcattaaaagatcatgaaaacaattaaaagaaaacaagccctt-cactacccatatgttcataaaacccttatgtgaatagagactc 288  Q
    ||||||||| ||||||||| || ||||| |||| || |||   |||||||  |||| ||||||||| ||||||||| |||| |||| |||||||||||||    
T  14645677 atttaacataaattcattataaaatcataaaaaaaaataaggcaaaacaaaacctttcactacccagatgttcatacaacc-ttatttgaatagagactc 14645775  T
Q  289 ccccatacctctagtttgcagaattgatga 318  Q
    |||| |||||||||||| | ||||||||||    
T  14645776 ccccttacctctagttttccgaattgatga 14645805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 175 - 354
Target Start/End: Complemental strand, 18552493 - 18552314
Alignment:
Q  175 caaattagagcacaaatttaacatgaattcattaaaagatcatg-aaaacaattaaaagaaaacaagcccttcactacccatatgttcataaaaccctta 273  Q
    ||||||||||||| |||| ||||||||||| |||||||| |||| ||||||||  ||| | ||||  | ||||||||||| |||| ||||| ||||||||    
T  18552493 caaattagagcacgaattaaacatgaattcgttaaaagaacatgcaaaacaatataaa-acaaca--ctcttcactacccgtatgctcatacaaccctta 18552397  T
Q  274 tg-tgaatagagactcccccatacctctagtttgc-agaattgatgattttctatggtgaaatctctctctaggttcatctca 354  Q
    || |||| |||||||||||  ||| |||||||| | | | ||||||| || ||||| |||||| |||||| |||||| |||||    
T  18552396 tgctgaaaagagactccccattacttctagtttactaaatttgatgaattactatgatgaaatatctctccaggttcttctca 18552314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 353
Target Start/End: Original strand, 23974154 - 23974213
Alignment:
Q  294 tacctctagtttgcagaattgatgattttctatggtgaaatctctctctaggttcatctc 353  Q
    |||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| ||||    
T  23974154 tacctctagtttgcagaattgatgatttcctacggtgaaatctttctctaggttcttctc 23974213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 44278085 - 44277959
Alignment:
Q  168 acaacaacaaattagagcacaaatttaacatgaattcatt-aaaagatcatgaaaacaattaaaagaaa---acaagcccttcactacccatatgttcat 263  Q
    ||||||||||||||||| | |||||||||||||||||||| |||| | |||  ||||||  |||| |||   |||| |||||||||||||||||||||||    
T  44278085 acaacaacaaattagagtataaatttaacatgaattcattaaaaaaaacatataaacaaagaaaaaaaaaacacaaacccttcactacccatatgttcat 44277986  T
Q  264 aaaacccttatgtgaatagagactcccc 291  Q
    | |||||   |||||| |||||||||||    
T  44277985 ataaccc-actgtgaagagagactcccc 44277959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 340
Target Start/End: Original strand, 11153814 - 11153891
Alignment:
Q  266 aacccttatg-tgaatagagactccccca-tacctctagtttgcagaa-ttgatgattttctatggtgaaatctctct 340  Q
    |||||||||| |||||||||||||||||| ||||||||||| | |||| ||||||| ||  || ||||||||||||||    
T  11153814 aacccttatgatgaatagagactcccccattacctctagttcgaagaatttgatgaattcatacggtgaaatctctct 11153891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 172 - 353
Target Start/End: Original strand, 40391280 - 40391465
Alignment:
Q  172 caacaaattagagcacaaatttaacatg--aattcattaaaagatcatgaaaacaattaaaagaaa-acaagcccttcactacccatatgttcataaaac 268  Q
    ||||||| |||||||||||||||||||   ||||||||||||||| | ||||||||  || | ||| |||| ||||||||||| |||||||| ||| |||    
T  40391280 caacaaagtagagcacaaatttaacatctcaattcattaaaagattaagaaaacaaagaagaaaaacacaaacccttcactactcatatgtttatataac 40391379  T
Q  269 ccttatg-tgaatagagactcccccatacctctagttt-gcagaattgatgattttctatggtgaaatctctctctaggttcatctc 353  Q
    ||||| | |||||| | |||||||| |||||||||||| ||  |||||||| ||||||| | |||||||||||| ||||||| ||||    
T  40391380 ccttacgatgaataaa-actcccccttacctctagttttgcgaaattgatggttttctaagttgaaatctctctttaggttcttctc 40391465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 42147389 - 42147470
Alignment:
Q  193 taacatgaattcattaaaagatcatg-aaaacaattaaaagaaaacaagcccttcactacccatatgttcataaaacccttatg 275  Q
    |||||||||||||||||||||||||| |||||||| ||||  ||| ||  ||||||||||||||||||||||| ||| ||||||    
T  42147389 taacatgaattcattaaaagatcatgaaaaacaatgaaaaataaaaaa--ccttcactacccatatgttcatacaacacttatg 42147470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 353
Target Start/End: Original strand, 17290600 - 17290715
Alignment:
Q  241 cccttcactacccatatgttcataaaacccttatg-tgaatagagactcccccat-acctctagtttgcagaa-ttgatgattttctatggtgaaatctc 337  Q
    |||||||| |||||||| |||||| |||||||||| ||||||||||||||||| | ||||||| |||  |||| ||||| ||||  || ||| |||||||    
T  17290600 cccttcacaacccatatattcatacaacccttatggtgaatagagactccccccttacctctaattttgagaaattgataatttcatacggtaaaatctc 17290699  T
Q  338 tctctaggttcatctc 353  Q
    ||||||||||| ||||    
T  17290700 tctctaggttcttctc 17290715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 9883636 - 9883692
Alignment:
Q  266 aacccttatg-tgaatagagactcccccatacctctagtttgcagaattgatgattt 321  Q
    |||||||||| | |||||| |||||||||||||||||||||| ||||||||||||||    
T  9883636 aacccttatggtaaatagaaactcccccatacctctagtttgtagaattgatgattt 9883692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 42147468 - 42147506
Alignment:
Q  315 atgattttctatggtgaaatctctctctaggttcatctc 353  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  42147468 atgattttctatggtgaaatctctctctaggttcttctc 42147506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 6465713 - 6465787
Alignment:
Q  275 gtgaatagagactcccccatacctctagtttgcagaatt-gatgattttctatggtgaaatctctctctaggttc 348  Q
    ||||||||||||||||   ||||||||||| | |||||| ||||| ||||||| || ||||||||||| ||||||    
T  6465713 gtgaatagagactcccttttacctctagttcggagaatttgatgaatttctatagtaaaatctctctccaggttc 6465787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 251 - 353
Target Start/End: Original strand, 16093511 - 16093615
Alignment:
Q  251 cccatatgttcataaaacccttatg-tgaatagagactcccc-catacctctagtttgcagaattgatgattttctatggtgaaatctctctctaggttc 348  Q
    |||||||| | ||| |||||||||| |||||||||||||||| | ||||||||||||||| || |||||| ||||||  |||||||||||||||||||||    
T  16093511 cccatatgattatacaacccttatggtgaatagagactcccctcttacctctagtttgcaaaagtgatgaatttctacagtgaaatctctctctaggttc 16093610  T
Q  349 atctc 353  Q
     ||||    
T  16093611 ctctc 16093615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 32623669 - 32623604
Alignment:
Q  289 ccccatacctctagttt-gcagaattgatgattttctatggtgaaatctctctctaggttcatctc 353  Q
    |||| |||||||||||| ||| |||||||||||||||| |||||||||||||||||| ||| ||||    
T  32623669 ccccctacctctagttttgcaaaattgatgattttctacggtgaaatctctctctagattcttctc 32623604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 353
Target Start/End: Complemental strand, 27387000 - 27386940
Alignment:
Q  294 tacctctagttt-gcagaattgatgattttctatggtgaaatctctctctaggttcatctc 353  Q
    |||||||||||| ||  |||| ||||||||||| |||||||||||||||||||||| ||||    
T  27387000 tacctctagttttgcgaaattaatgattttctacggtgaaatctctctctaggttcttctc 27386940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 4709 - 4793
Alignment:
Q  175 caaattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaattaa-aagaaaacaagcccttcactacccatatg 258  Q
    |||||||||||||||||||||||||||||||| |||| | |||||||||||  || || || |||| ||||||||||||||||||    
T  4709 caaattagagcacaaatttaacatgaattcatcaaaaaaacatgaaaacaaggaagaaaaacacaaacccttcactacccatatg 4793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 171558 - 171485
Alignment:
Q  244 ttcactacccatatgttcataaaacccttatgtgaatagagactcccccatacctctagtttgcagaattgatga 318  Q
    ||||||||||| ||||||||| |||| |||| ||||||||||||||||| |||||||||||| | ||||||||||    
T  171558 ttcactacccagatgttcatacaacc-ttatttgaatagagactcccccttacctctagttttccgaattgatga 171485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 48232 - 48310
Alignment:
Q  242 ccttcactacccatatgttcataaaacccttat-gtgaatagagact-cccccatacctctagtttgcagaattgatga 318  Q
    ||||||||||||||||| ||||| || |||||| ||||||||||||| ||||| |||||||||||| | ||||||||||    
T  48232 ccttcactacccatatgatcatacaatccttatggtgaatagagactccccccttacctctagttttccgaattgatga 48310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 353
Target Start/End: Original strand, 182968 - 183034
Alignment:
Q  288 cccccatacctctagtttgcagaatt-gatgattttctatggtgaaatctctctctaggttcatctc 353  Q
    ||||| |||||||||||||||||||| |||||||||||| |||||||||||| |||| |||| ||||    
T  182968 cccccttacctctagtttgcagaatttgatgattttctacggtgaaatctctatctacgttcctctc 183034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 1252 - 1352
Alignment:
Q  168 acaacaacaaattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaattaaaagaaaacaagcccttcactacccatatgttcataaaa 267  Q
    ||||||||||| |||||||| ||||  |||| |||||||||||||||||||||||  | || || | |||||  ||||||||||||||||| ||||| ||    
T  1252 acaacaacaaactagagcacgaattcgacattaattcattaaaagatcatgaaaaacaatagaaaacaacaa-tccttcactacccatatggtcatacaa 1350  T
Q  268 cc 269  Q
    ||    
T  1351 cc 1352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 39176442 - 39176519
Alignment:
Q  266 aacccttatg-tgaatagagact-cccccat-acctctagttt-gcagaattgatgattttctatggtgaaatctctc 339  Q
    |||||||||| |||||||||||| ||||||| ||||||||||| ||  ||||||||||||||||||||||||||||||    
T  39176442 aacccttatgatgaatagagacttcccccattacctctagttttgcgaaattgatgattttctatggtgaaatctctc 39176519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 39436039 - 39435973
Alignment:
Q  275 gtgaatagagactcccccatacctctag-tttgcagaattgatgattttctatggtgaaatctctct 340  Q
    |||||||||||||||||| ||||||||| ||||   |||||||||||| ||| ||||||||||||||    
T  39436039 gtgaatagagactcccccttacctctagttttgtgaaattgatgatttcctacggtgaaatctctct 39435973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 340
Target Start/End: Original strand, 9548696 - 9548833
Alignment:
Q  205 attaaaagatcatgaaaacaattaaaagaaaacaagcc-cttcactacccatatgttcataaaacccttatg-tgaatagagactcccccat-acctcta 301  Q
    ||||||||||||||||||  |  ||||||||||||  | |||||||||| ||||| ||||| |||||||||| |||| |||||||||||| | | |||||    
T  9548696 attaaaagatcatgaaaaaca--aaaagaaaacaaaactcttcactacc-atatgatcatacaacccttatgatgaacagagactccccccttatctcta 9548792  T
Q  302 gttt--gcagaattgatgattttctatggtgaaatctctct 340  Q
    ||||  ||  |||||||||||| ||| ||||||||||||||    
T  9548793 gtttttgcgaaattgatgatttcctacggtgaaatctctct 9548833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 353
Target Start/End: Complemental strand, 19769123 - 19769032
Alignment:
Q  266 aacccttatg-tgaatagagactccccca--tacctctagtttgcagaatt-gatgattttctatggtgaaatctctctctaggttcatctc 353  Q
    |||||||||| |||||||||||||||||   ||||||||||| | |||||| ||||| || ||| |||||||||||||||||| ||| ||||    
T  19769123 aacccttatgatgaatagagactccccccattacctctagttcgaagaatttgatgaattcctacggtgaaatctctctctagattcttctc 19769032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 19566996 - 19566946
Alignment:
Q  243 cttcactacccatatgttcataaaacccttat-gtgaatagagactccccc 292  Q
    |||||||||||||||||||| | ||||||||| ||||||| ||||||||||    
T  19566996 cttcactacccatatgttcacacaacccttatggtgaatacagactccccc 19566946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 16222 - 16288
Alignment:
Q  241 cccttcactacccatatgttcataaaacccttat-gtgaatagagac-tcccccatacctctagttt 305  Q
    |||||||||||||| ||| ||||| ||||||| | |||||||||||| |||||| ||||||||||||    
T  16222 cccttcactacccacatgatcatacaacccttttggtgaatagagacttcccccttacctctagttt 16288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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