View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11708_high_2 (Length: 767)
Name: NF11708_high_2
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11708_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 703; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 15 - 751
Target Start/End: Original strand, 2573843 - 2574577
Alignment:
| Q |
15 |
acatcacaagtaaccaaggttggagtcaagcagtgtctgaatttagctgggataacaaatttgttggagctcaaacattactaacacaggtattcatatt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2573843 |
acatcacaagtaaccaaggttggagtcaagcagtgtctgaatttagctgggataacaaatttgttggagctcaaacattactaacacaggtattcatatt |
2573942 |
T |
|
| Q |
115 |
tatagctaaaccattgactaccatatagcaaaactgtattctttagtaaacattagttcaaaggaaaaaattaactaattaattctaattgttttccttt |
214 |
Q |
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| T |
2573943 |
tatagttaaaccattgactaccatatagcaaaactgtattctttagtaaacattagttcaaaggaaaaaattaactaattaattctaattgttttccttt |
2574042 |
T |
|
| Q |
215 |
catcttttgtcaaggaattttatggcgggagggaagagttagccaagtttcagactgatgctgaatcatttatatgtgcattgatgccaggaagtagctc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2574043 |
catcttttgtcaaggaattttatggcgggagggaagagttagccaagtttcagactgatgctgaatcatttatatgtgcattgatgccaggaagtagctc |
2574142 |
T |
|
| Q |
315 |
tctacaaattaaaacaactccaggtatacatatagactatatttaatgattgcaaagtaatagtacatttaacatatgatggaatgagctcatttagttt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2574143 |
tctacaaattaaaacaactccaggtatacatatagactatatttaatgattgcaaagtaatagtacatttaacatatgattgaatgagctcatttagttt |
2574242 |
T |
|
| Q |
415 |
attatttattgttaactcaggtgggcttctgtatattagagatagcagtaatttgcaatataccacaacctcaaccatggtactattcattttctccaaa |
514 |
Q |
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| T |
2574243 |
attatttattgttaactcaggtgggcttctgtatattagagatagcagtaatttgcaatataccacaacctcaaccatggtactattcattttctccaaa |
2574342 |
T |
|
| Q |
515 |
atcttaaacaaaaaccatattgatggaatacactgtggctctgcccatttttcaccctctgagattagagcctttgcaaaattacaggtatatatacata |
614 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2574343 |
atcttaaacaaaaaccatattgatggaatacactgtggctctgcccatttttcaccctctgagattagagcctttgcaaaattacaggtatat----ata |
2574438 |
T |
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| Q |
615 |
cttatctaattttacttcacaaatattaagctcatttattaattttcttaattttggttcatgactaaaagttgaatgtgtac--attacataggtggac |
712 |
Q |
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| T |
2574439 |
cttatctaattttacttcacaaatattaagctcatttattaattttcttaattttggttcatgactaaaagttgaatgtgtacatattacataggtggac |
2574538 |
T |
|
| Q |
713 |
tacatactaggaaacaatcccatgaagatgtcatatatg |
751 |
Q |
| |
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| T |
2574539 |
tacatactaggaaacaatcccatgaagatgtcatatatg |
2574577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 420 - 605
Target Start/End: Original strand, 2564353 - 2564538
Alignment:
| Q |
420 |
ttattgttaactcaggtgggcttctgtatattagagatagcagtaatttgcaatataccacaacctcaaccatggtactattcattttctccaaaatctt |
519 |
Q |
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||||| ||||||||||||| ||| |||||| ||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
2564353 |
ttattattaactcaggtggacttttgtatactagagatagtaataatttgcaatacaccacgacctcaaccatggtactattcattttctccaaaatcct |
2564452 |
T |
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| Q |
520 |
aaacaaaaaccatattgatggaatacactgtggctctgcccatttttcaccctctgagattagagcctttgcaaaattacaggtat |
605 |
Q |
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||||||||| ||||||||||||| || ||||||||| || |||| | ||||||| |||| |||||||||||||| |||||||| |
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| T |
2564453 |
aaacaaaaataatattgatggaattcattgtggctctaccaatttcacctcctctgaaattaaagcctttgcaaaatcacaggtat |
2564538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 2563993 - 2564094
Alignment:
| Q |
15 |
acatcacaagtaaccaaggttggagtcaagcagtgtctgaatttagctgggataacaaatttgttggagctcaaacattactaacacaggtattcatatt |
114 |
Q |
| |
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|||||||| |||||||||||||| ||| |||| |||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||| |
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| T |
2563993 |
acatcacagataaccaaggttggaatcaggcagcgtctgagttcagctgggataacaaatttgttggagttcaaacattactaacacaggtctttatatt |
2564092 |
T |
|
| Q |
115 |
ta |
116 |
Q |
| |
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|| |
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|
| T |
2564093 |
ta |
2564094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 678 - 747
Target Start/End: Original strand, 2564610 - 2564679
Alignment:
| Q |
678 |
actaaaagttgaatgtgtacattacataggtggactacatactaggaaacaatcccatgaagatgtcata |
747 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2564610 |
actaaaaattgaatgtgtacataacataggtggactacatactaggtaacaatcccatgaagatgtcata |
2564679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 227 - 342
Target Start/End: Original strand, 2564173 - 2564288
Alignment:
| Q |
227 |
aggaattttatggcgggagggaagagttagccaagtttcagactgatgctgaatcatttatatgtgcattgatgccaggaagtagctctctacaaattaa |
326 |
Q |
| |
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||||||| ||||| |||| | | || ||||| ||| |||| | ||||| |||||||||||||||||| ||||||| ||||||| ||||||||| ||||| |
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| T |
2564173 |
aggaattctatggtgggaagaaggacttagcaaagattcatagtgatggtgaatcatttatatgtgctttgatgcaaggaagttactctctacagattaa |
2564272 |
T |
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| Q |
327 |
aacaactccaggtata |
342 |
Q |
| |
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|| ||| || |||||| |
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| T |
2564273 |
aaaaacacctggtata |
2564288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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