View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11708_high_31 (Length: 212)
Name: NF11708_high_31
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11708_high_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 29 - 194
Target Start/End: Complemental strand, 2196337 - 2196172
Alignment:
| Q |
29 |
aatccatgaactttacttgctttggagattttatagtaaagttcacctaatgttgcaccagcctgaatcgaagcagattcatcggcaagattaatttcga |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
2196337 |
aatccatgaactttacttgctttggagattttatagtaaagttcacctaatgttgcaccagcctgaatccaagcagattcatcggcaagattaatgtcga |
2196238 |
T |
|
| Q |
129 |
tcaaacggatgttgatgagatcaatcatgataaagggtgtcttacaaagataagatagtccttcat |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2196237 |
tcaaacggatgttgatgagatcaatcatgataaagggtgtcttacaaagataagatagtccttcat |
2196172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 2175758 - 2175581
Alignment:
| Q |
17 |
ttacctgcaggaaatccatgaactttacttgctttggagattttatagtaaagttcacctaatgttgcaccagcctgaatcgaagcagattcatcggcaa |
116 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
2175758 |
ttacctgcagggaatgcatgaactttacttgctttggagattttatagtaaagttcacctaatgttgcacctgcctgaatccaagcagattcatcggcaa |
2175659 |
T |
|
| Q |
117 |
gattaatttcgatcaaacggatgttgatgagatcaatcatgataaagggtgtcttacaaagataagatagtccttcat |
194 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2175658 |
gattaatgtcgatcgaacggatgttgatgagatcaatcatgataaagggtgtcttacaaagataagatagtccttcat |
2175581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 2152086 - 2151910
Alignment:
| Q |
18 |
tacctgcaggaaatccatgaactttacttgctttggagattttatagtaaagttcacctaatgttgcaccagcctgaatcgaagcagattcatcggcaag |
117 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
2152086 |
tacctgcagggaatgcatgaactttacttgctttggagattttatagtatagttcacctaacgttgcacctgcctgaatccaagcagattcatcggcaag |
2151987 |
T |
|
| Q |
118 |
attaatttcgatcaaacggatgttgatgagatcaatcatgataaagggtgtcttacaaagataagatagtccttcat |
194 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2151986 |
attaatttcgatcgaacggatgttgatgagatcaatcatgataaagggtgtcttacaaagataagatagtccttcat |
2151910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 29 - 194
Target Start/End: Complemental strand, 35538601 - 35538436
Alignment:
| Q |
29 |
aatccatgaactttacttgctttggagattttatagtaaagttcacctaatgttgcaccagcctgaatcgaagcagattcatcggcaagattaatttcga |
128 |
Q |
| |
|
||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
35538601 |
aatccatgaactttatttgtttcggagattttatagtaaagttcacctaatgttgcaccagcctgaatccaagcagattcatcggcaagattaatgtcga |
35538502 |
T |
|
| Q |
129 |
tcaaacggatgttgatgagatcaatcatgataaagggtgtcttacaaagataagatagtccttcat |
194 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35538501 |
tcgaacggatgttgatgagatcaatcatgataaagggtgtcttacaaagataagataatccttcat |
35538436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 35557044 - 35556869
Alignment:
| Q |
19 |
acctgcaggaaatccatgaactttacttgctttggagattttatagtaaagttcacctaatgttgcaccagcctgaatcgaagcagattcatcggcaaga |
118 |
Q |
| |
|
||||| ||| ||||||||||||||| ||| || ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35557044 |
acctgaagggaatccatgaactttatttgtttcggagattttatagtaaagttcacttaatgttgcaccagcctgaatccaagcagattcatcggcaaga |
35556945 |
T |
|
| Q |
119 |
ttaatttcgatcaaacggatgttgatgagatcaatcatgataaagggtgtcttacaaagataagatagtccttcat |
194 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35556944 |
ttaatgtcgatcgaacggatgttgatgagatcaatcatgataaagggtgtcttacaaagataagatattccttcat |
35556869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University