View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11708_low_11 (Length: 530)
Name: NF11708_low_11
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11708_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 27 - 520
Target Start/End: Original strand, 3826127 - 3826622
Alignment:
| Q |
27 |
agagtaccacaataacaacacagcacaatcgaacagagacaaccctgcgcaatatcaaatagaactattgcatgttagaggttgaagacacccttgattt |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3826127 |
agagtaccacaataacaacacagcacaatcgaacagagacaaccctgcgcaatatcaaatagaactattgcatgttagaggttgaagacacccttaattt |
3826226 |
T |
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| Q |
127 |
agagcgtaactaa----accctttagctaaataagcttaaaggatcccataacccatatacaaagaatgagcttatcatttttgaagccaatcggctcaa |
222 |
Q |
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| T |
3826227 |
agagcgtaactaattaaaccctttagctaaata-gcttaaaggatcccataacccatatacaaagaatgagcttatctattttgaagccaatcggctcaa |
3826325 |
T |
|
| Q |
223 |
acgcactatcgagtttatataccaatcagaaaaataataatcaacttgtctaccctaccttaatgcgagttaggcttggttggacataaccataaatctt |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3826326 |
acgcactatcgagtttatataccaatcagaaaaataataatcaacttgtctaccctaccttaatgcgagttaggcttggttggacataaccataaatctt |
3826425 |
T |
|
| Q |
323 |
ttgtatgtaggttcacacccattagtaaaaatagatataaaaggaaaagtaaatttacaaaatatgcatgcatgtgactgaataaacctatctcccctta |
422 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3826426 |
ttgtatgtaggtgcacacccattagtaaaaatagatataaaaggaaaagtaaatttacaaaatatgcatgcatgtgactgaataaacctatctcccctta |
3826525 |
T |
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| Q |
423 |
ctacataccaaactcatgtaacatgtttgatttgttcctttcctnnnnnnnnttgatttgtttccacaacatcattccaatccccaaccttgcctttg |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3826526 |
ctacataccaaactcatgtaacatgtttgatttgttcctttcctaaaaaaaattgatttg-ttccacaacatcattccaatccccaaccttgcctttg |
3826622 |
T |
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