View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11708_low_12 (Length: 521)
Name: NF11708_low_12
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11708_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 85 - 503
Target Start/End: Original strand, 37572119 - 37572537
Alignment:
| Q |
85 |
gtaatcaatcagtgaaagaaagtttttgaagaaccatgttcagaaaaattctcttgttgttgtcttttttctgataatttcttcagcagagagaattgtt |
184 |
Q |
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| T |
37572119 |
gtaatcaatcagtgaaagaaagtttttgaagaaccatgttcagaaaaattctcttgttgttgtcttttttctgataatttcttcagcagagagaattgtt |
37572218 |
T |
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| Q |
185 |
ccatggagaaaacacagtaacctcgttcacaaagctttgtttgtgcaaccggtgagttcaccagaatctgcaaagcttggtttcttttcagcttctccaa |
284 |
Q |
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| T |
37572219 |
ccatggagaaaacacagtaacctcgttcacaaagctttgtttgtgcaaccggtgagttcaccagaatctgcaaagcttggtttcttttcagcttctccaa |
37572318 |
T |
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| Q |
285 |
gtcatcaaaaacaccaccagaagcagtagttccaccaccgccgtagccgacaccgtaagaaggcattgattgaagaacagataactgtgcctgcaaaaac |
384 |
Q |
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| T |
37572319 |
gtcatcaaaaacaccaccagaagcagtagttccaccaccgccgtagccgacaccgtaagaaggcattgattgaagaacagataactgtgcctgcaaaaac |
37572418 |
T |
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| Q |
385 |
ttaacatatttgtaagcttcttcataaagagtagcttgatccattctcttgtcccatggcattagtttctgaagacagcgtgttttctcgcttagttttt |
484 |
Q |
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| T |
37572419 |
ttaacgtatttgtaagcttcttcataaagagtagcttgatccattctcttgtcccatggcattagtttctgaagacagcgtgttttctcgcttagttttt |
37572518 |
T |
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| Q |
485 |
gtcttctttgtcttgctaa |
503 |
Q |
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| T |
37572519 |
gtcttctttgtcttgctaa |
37572537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 37572036 - 37572093
Alignment:
| Q |
2 |
gtcgagagagcactaagnnnnnnngggttaaacttgaacgaacacgagaaacggtgtc |
59 |
Q |
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| T |
37572036 |
gtcgagagagcactaagcaaaaaagggttaaacttgaacgaacacaagaaacggtgtc |
37572093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 138 - 301
Target Start/End: Complemental strand, 37221283 - 37221120
Alignment:
| Q |
138 |
ttgttgttgtcttttttctgataatttcttcagcagagagaattgttccatggagaaaacacagtaacctcgttcacaaagctttgtttgtgcaaccggt |
237 |
Q |
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||||||||||||||| | ||||||||| | |||| ||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||| ||| |
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| T |
37221283 |
ttgttgttgtcttttctatgataattttctgagcaaagagaattgttccatggagaaaacacaataacattgttcacaaagctttgtttttgcaactggt |
37221184 |
T |
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| Q |
238 |
gagttcaccagaatctgcaaagcttggtttcttttcagcttctccaagtcatcaaaaacaccac |
301 |
Q |
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| T |
37221183 |
gagttcaccaaaatctgtaatgcttggtttctgttcagcttctccaagtcatcaaaaacaccac |
37221120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 437 - 503
Target Start/End: Complemental strand, 37221093 - 37221027
Alignment:
| Q |
437 |
cccatggcattagtttctgaagacagcgtgttttctcgcttagtttttgtcttctttgtcttgctaa |
503 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| |||| |
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| T |
37221093 |
cccatggcattagtttctgaagacaacatgttttctcgcttagattttgtcttctttgtctttctaa |
37221027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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