View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11708_low_13 (Length: 444)
Name: NF11708_low_13
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11708_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 87 - 425
Target Start/End: Complemental strand, 53463272 - 53462934
Alignment:
| Q |
87 |
caacatttttggatcactacattagcagctactaataattcacaataaaacaaaataaacctaaaattagaacataagttatttgtaataacccttctat |
186 |
Q |
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| T |
53463272 |
caacatttttggatcactacattagcagctactaataattcacaataaaacaaaataaacctaaaattagaacataagttatttgtaataacccttctat |
53463173 |
T |
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| Q |
187 |
ccttctgccgcacgccgcttcatttgcatatacacagtaaaatgcgacaatttcagaaagttaccgcagtaactacggcaatttcttataattttatctc |
286 |
Q |
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| T |
53463172 |
ccttctgccgcacgccgcttcatttgcatatacacagtaaaatgcgacaatttcagaaagttaccgcagtaactacggcaatttcttataattttatctc |
53463073 |
T |
|
| Q |
287 |
aatatcaagattttcgtgcacaactgtataacaatgtcatgaagtgcatgtttaatatcgcaacgatgatcagagtaattcatgttattctgatataaac |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53463072 |
aatatcaagattttcgtgcacaactgtataacaatgtcatgaagtgcatgtttaatatcgcaacgatgatcagagtaattcatgttattctgatataaac |
53462973 |
T |
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| Q |
387 |
atgccccaatgaattttgatcgatcgttcagcagggact |
425 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
53462972 |
atgcaccaatgaattttgatcgatcgttcagcagggact |
53462934 |
T |
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