View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11708_low_14 (Length: 443)
Name: NF11708_low_14
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11708_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 41230934 - 41230504
Alignment:
| Q |
18 |
attggttgccaccggatgttgttatgtcttgtgttgtgcatttggtattgttgggagattttcaaaacatacttttcaaaggttgttttgttagttacta |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41230934 |
attggttgccactggatgttgttatgtcttgtgttgtgcatttggtattgttgggagattttcaaaacatacttttcaaaggttgttttgttagttacta |
41230835 |
T |
|
| Q |
118 |
taaatagattttatggtagttaaatgtttagctgattagaacttagctcaatttaacctttgataattttatttatatttgagtgtgtcat--------- |
208 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41230834 |
taaatagagtttatggtagttaaatgtttagctgattagaacctagctcaatttaacctttgataattttatttatatttgagtgtgtcatttcagtgtc |
41230735 |
T |
|
| Q |
209 |
----caagaaatttatctgagagtgacctacaacaagctgctttgccaccaagagggtggaattcctacgattcattttcgtggataatatctgaagaag |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41230734 |
tcatcaagaaatttatctgagagtgacctacaacaagctgctttgccaccaagagggtggaattcctacgattcattttcgtggataatatctgaagaag |
41230635 |
T |
|
| Q |
305 |
aattcttacagaatgctgaaatagtttctcagcgtcttcatgc-----gatatgaggtataaacactgaaatgaactgattttactttactgcattagta |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41230634 |
aattcttacagaatgctgaaatagtttctcagcgtcttcatgctcatggatatgaggtataaacactgaaatgaactgattttactttactgcattagta |
41230535 |
T |
|
| Q |
400 |
gtgctttggttatagatatagattgatttct |
430 |
Q |
| |
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|||||||||||||||||||| |||||||||| |
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| T |
41230534 |
gtgctttggttatagatatatattgatttct |
41230504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 37359687 - 37359874
Alignment:
| Q |
194 |
atttgagtgtgtcatcaagaaatttatctgagagtgacctacaacaagctgctttgccaccaagagggtggaattcctacgattcattttcgtggataat |
293 |
Q |
| |
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|||| |||||||||||| |||| || || | |||||| ||||||||||||| || ||||||||||| ||||||||||| ||| | ||||| |||||||| |
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| T |
37359687 |
atttcagtgtgtcatcacaaaatgtaactaaaagtgacatacaacaagctgcctttccaccaagaggttggaattcctatgatgccttttcttggataat |
37359786 |
T |
|
| Q |
294 |
atctgaagaagaattcttacagaatgctgaaatagtttctcagcgtcttcatgc-----gatatgaggtataaacactgaaatgaact |
376 |
Q |
| |
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|||||||||||||||||||| ||||||||| |||||||||| ||||| | ||| ||||||||||||||| ||||||| ||||| |
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| T |
37359787 |
ttctgaagaagaattcttacaaaatgctgaattagtttctcaacgtctccttgctcacggatatgaggtataaatactgaaaggaact |
37359874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 37368377 - 37368190
Alignment:
| Q |
194 |
atttgagtgtgtcatcaagaaatttatctgagagtgacctacaacaagctgctttgccaccaagagggtggaattcctacgattcattttcgtggataat |
293 |
Q |
| |
|
|||| |||||||||||| |||| || || | |||||| ||||||||||||| || ||||||||||| ||||||||||| ||| | ||||| |||||||| |
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| T |
37368377 |
atttcagtgtgtcatcacaaaatgtaactaaaagtgacatacaacaagctgcctttccaccaagaggttggaattcctatgatgccttttcttggataat |
37368278 |
T |
|
| Q |
294 |
atctgaagaagaattcttacagaatgctgaaatagtttctcagcgtcttcatgc-----gatatgaggtataaacactgaaatgaact |
376 |
Q |
| |
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|||||||||||||||||||| ||||||||| |||||||||| ||||| | ||| ||||||||||||||| ||||||| ||||| |
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| T |
37368277 |
ttctgaagaagaattcttacaaaatgctgaattagtttctcaacgtctccttgctcacggatatgaggtataaatactgaaaggaact |
37368190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 194 - 341
Target Start/End: Original strand, 37381842 - 37381989
Alignment:
| Q |
194 |
atttgagtgtgtcatcaagaaatttatctgagagtgacctacaacaagctgctttgccaccaagagggtggaattcctacgattcattttcgtggataat |
293 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| || |||| |||| | |||||||||||||| ||||||||||| ||| | ||||| |||||||| |
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| T |
37381842 |
atttcagtgtgtcatcaagaaatttatctgagagtaacatacagcaagtaggcttgccaccaagaggttggaattcctatgatgccttttcctggataat |
37381941 |
T |
|
| Q |
294 |
atctgaagaagaattcttacagaatgctgaaatagtttctcagcgtct |
341 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| ||||||||||||| |
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| T |
37381942 |
ttctgaacaagagttcttacagaatgctgaaattatttctcagcgtct |
37381989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 199 - 341
Target Start/End: Original strand, 37374511 - 37374653
Alignment:
| Q |
199 |
agtgtgtcatcaagaaatttatctgagagtgacctacaacaagctgctttgccaccaagagggtggaattcctacgattcattttcgtggataatatctg |
298 |
Q |
| |
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|||||||||||||||||||||||| |||| || |||| ||| | |||||||||||||| ||||||||||| ||| ||||||| |||||||| |||| |
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| T |
37374511 |
agtgtgtcatcaagaaatttatctcggagtaacatacagcaaataggcttgccaccaagaggttggaattcctatgatgcattttcctggataatttctg |
37374610 |
T |
|
| Q |
299 |
aagaagaattcttacagaatgctgaaatagtttctcagcgtct |
341 |
Q |
| |
|
|| |||||||||||||||||||| |||| |||||||||||||| |
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| T |
37374611 |
aacaagaattcttacagaatgctcaaattgtttctcagcgtct |
37374653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 438
Target Start/End: Original strand, 37382045 - 37382104
Alignment:
| Q |
379 |
ttttactttactgcattagtagtgctttggttatagatatagattgatttctctgcttct |
438 |
Q |
| |
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||| ||||||||||||||||||| ||||||||||| |||||||||||||| | ||||||| |
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| T |
37382045 |
tttcactttactgcattagtagtactttggttatatatatagattgatttatttgcttct |
37382104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 39243094 - 39243182
Alignment:
| Q |
250 |
ccaccaagagggtggaattcctacgattcattttcgtggataatatctgaagaagaattcttacagaatgctgaaatagtttctcagcg |
338 |
Q |
| |
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||||||||||| ||||||||||| |||| |||| |||||||| |||||| |||| |||||||| | |||| |||||||||||||||| |
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| T |
39243094 |
ccaccaagaggttggaattcctatgattgcttttgctggataatttctgaacaagagttcttacaaagtgctcaaatagtttctcagcg |
39243182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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