View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11708_low_15 (Length: 432)
Name: NF11708_low_15
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11708_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 2154144 - 2154331
Alignment:
| Q |
1 |
tttggtattccactaaggacgtaacttgaatgaataaatgtcgacacnnnnnnnntctatagtatcaataagtgcatcacacaaaaacaaatatcaccgc |
100 |
Q |
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| T |
2154144 |
tttggtattccactaaggacgtaacttgaatgaataaatgtcgacacaaaaaaa-tctatagtatcaataagtgcatcacacaaaaacaaatatcaccgc |
2154242 |
T |
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| Q |
101 |
aaatgaaaatgactatattctttacatttatctgag--aaataaaattaaaacaattaaagtatgaaaatttgtttgaaaaagctagta |
187 |
Q |
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| T |
2154243 |
aaatgaaaatgactatattctttacatttatctgagaaaaaaaaaattaaaacaattaaagtatgaaaatttgtttgaaaaagctagta |
2154331 |
T |
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Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 222 - 411
Target Start/End: Original strand, 2154327 - 2154514
Alignment:
| Q |
222 |
tagtatatcaaatagtttgtgttattttaacttgttatnnnnnnnnnnttgttgaaaacatctgaaccaatgaatgtgattgctttctgagttttacaag |
321 |
Q |
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| T |
2154327 |
tagtatatcaaatagtttgtgttattttaacttgttaaaaaaaaaaa--tgttgaaaacatctgaaccaatgaatgtgattgctttctgagttttacaag |
2154424 |
T |
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| Q |
322 |
gggcccagaaaatgatatttttatgttaccataaaaaatttaatgacttcttaggagcaacctgtcttctccaatattggaagcattaaa |
411 |
Q |
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| T |
2154425 |
ggccccagaaaatgatatttttatgttaccataaaaaatttaatgacttcttaggagcaacctgtcttctccaatattggaagcattaaa |
2154514 |
T |
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