View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11708_low_16 (Length: 391)

Name: NF11708_low_16
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11708_low_16
NF11708_low_16
[»] chr1 (3 HSPs)
chr1 (168-365)||(18513810-18514012)
chr1 (266-352)||(12786237-12786327)
chr1 (241-271)||(24007325-24007355)
[»] chr7 (10 HSPs)
chr7 (177-342)||(3312552-3312718)
chr7 (259-342)||(3310934-3311017)
chr7 (276-372)||(33721245-33721343)
chr7 (177-225)||(3310866-3310914)
chr7 (236-292)||(16250385-16250442)
chr7 (266-354)||(18147605-18147697)
chr7 (245-372)||(32945329-32945455)
chr7 (241-325)||(13695830-13695916)
chr7 (241-325)||(13696038-13696124)
chr7 (172-225)||(34706801-34706856)
[»] scaffold0281 (1 HSPs)
scaffold0281 (241-372)||(1821-1954)
[»] chr4 (8 HSPs)
chr4 (176-372)||(25126219-25126416)
chr4 (294-372)||(23974154-23974232)
chr4 (232-358)||(19611919-19612046)
chr4 (175-358)||(18552310-18552493)
chr4 (190-318)||(14645677-14645805)
chr4 (243-370)||(15706660-15706790)
chr4 (168-291)||(44277959-44278085)
chr4 (266-340)||(11153814-11153891)
[»] chr3 (11 HSPs)
chr3 (185-372)||(3592994-3593182)
chr3 (168-289)||(32657267-32657390)
chr3 (172-363)||(18705516-18705707)
chr3 (168-358)||(3262249-3262442)
chr3 (285-367)||(15777330-15777412)
chr3 (228-342)||(18534434-18534549)
chr3 (193-292)||(24177926-24178025)
chr3 (243-352)||(30993240-30993352)
chr3 (241-367)||(3290608-3290737)
chr3 (241-341)||(3483604-3483706)
chr3 (176-299)||(32658576-32658705)
[»] chr8 (6 HSPs)
chr8 (172-372)||(40391280-40391484)
chr8 (241-372)||(17290600-17290734)
chr8 (315-358)||(42147468-42147511)
chr8 (193-275)||(42147389-42147470)
chr8 (266-321)||(9883636-9883692)
chr8 (275-352)||(6465713-6465791)
[»] scaffold0088 (1 HSPs)
scaffold0088 (177-358)||(35487-35673)
[»] chr2 (3 HSPs)
chr2 (251-359)||(16093511-16093621)
chr2 (289-372)||(32623585-32623669)
chr2 (294-355)||(27386938-27387000)
[»] scaffold0505 (1 HSPs)
scaffold0505 (175-258)||(4709-4793)
[»] scaffold0005 (1 HSPs)
scaffold0005 (244-318)||(171485-171558)
[»] scaffold0019 (1 HSPs)
scaffold0019 (288-358)||(182968-183039)
[»] scaffold0094 (1 HSPs)
scaffold0094 (242-318)||(48232-48310)
[»] chr5 (2 HSPs)
chr5 (275-352)||(39435961-39436039)
chr5 (266-339)||(39176442-39176519)
[»] scaffold0815 (1 HSPs)
scaffold0815 (168-269)||(1252-1352)
[»] chr6 (5 HSPs)
chr6 (266-354)||(19769031-19769123)
chr6 (205-372)||(9548696-9548863)
chr6 (275-358)||(12987076-12987162)
chr6 (243-366)||(19566869-19566996)
chr6 (285-354)||(19892891-19892961)
[»] scaffold0323 (1 HSPs)
scaffold0323 (241-305)||(16222-16288)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 168 - 365
Target Start/End: Complemental strand, 18514012 - 18513810
Alignment:
Q  168 acaacaacaaattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaattaaaagaaaac---aagcccttcactacccatatgttcata 264  Q
    |||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||  | |||||||    || || ||||||||| |||||||||||    
T  18514012 acaacaacaaattacagcataaatttaacatgaatttattaaaagatcatgaaaacaaa-agaagaaaatcataaacctttcactacctatatgttcata 18513914  T
Q  265 aaacccttatg-tgaatagagact-cccccatacctctagttt-gcagaattgatgattttctatggtgaaatctctctctaggttcttctcgctatttc 361  Q
     |||||||||| |||||||||||| ||||| ||||| |||||| ||  |||||||||||| ||||| | ||||||||||||||||||||||| ||||| |    
T  18513913 caacccttatggtgaatagagacttcccccttacctttagttttgcgaaattgatgatttcctatgttaaaatctctctctaggttcttctcactattcc 18513814  T
Q  362 tctt 365  Q
    ||||    
T  18513813 tctt 18513810  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 352
Target Start/End: Original strand, 12786237 - 12786327
Alignment:
Q  266 aacccttatg-tgaatagagactccccca--tacctctagtttgcagaatt-gatgattttctatggtgaaatctctctctaggttcttct 352  Q
    |||||||||| |||||||||||||||||   ||||||||||||| |||||| ||||| || ||| ||||||||||||||  ||||||||||    
T  12786237 aacccttatgatgaatagagactccccccattacctctagtttggagaatttgatgaattcctacggtgaaatctctcttcaggttcttct 12786327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Complemental strand, 24007355 - 24007325
Alignment:
Q  241 cccttcactacccatatgttcataaaaccct 271  Q
    |||||||||||||||||||||||||||||||    
T  24007355 cccttcactacccatatgttcataaaaccct 24007325  T

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Target: chr7 (Bit Score: 79; Significance: 8e-37; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 177 - 342
Target Start/End: Original strand, 3312552 - 3312718
Alignment:
Q  177 aattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaattaaaagaaa-acaagcccttcactacccatatgttcataaaacccttatg 275  Q
    ||||||||||||||| |||||| |||||||||||||||| |||||||||  || | ||| |||| |||||||||||||| || |||||| |||||||||     
T  3312552 aattagagcacaaatataacataaattcattaaaagatcgtgaaaacaaggaagaaaaacacaaacccttcactacccacatattcatacaacccttata 3312651  T
Q  276 tgaatagagactcccccatacctctagtttgcagaattgatgattttctatggtgaaatctctctct 342  Q
    ||||||||||||||||| || ||||||||||| |||||||||| || ||| |||  |||||||||||    
T  3312652 tgaatagagactcccccttatctctagtttgccgaattgatgacttcctacggttgaatctctctct 3312718  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 342
Target Start/End: Original strand, 3310934 - 3311017
Alignment:
Q  259 ttcataaaacccttatgtgaatagagactcccccatacctctagtttgcagaattgatgattttctatggtgaaatctctctct 342  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||  |||||||||| || |||  ||  |||||||||||    
T  3310934 ttcatacaacccttatatgaatagagactcccccttacctctagtttgtcgaattgatgacttcctactgttgaatctctctct 3311017  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 372
Target Start/End: Original strand, 33721245 - 33721343
Alignment:
Q  276 tgaatagagactcccccatacctctagttt-gcagaattgatgattttctatggt-gaaatctctctctaggttcttctcgctatttctctttgtctct 372  Q
    |||||| | |||||||| || ||||||||| ||||||| ||||| ||||||  || ||||||||||||||||||||||||||||| |||| || |||||    
T  33721245 tgaataaacactcccccttatctctagttttgcagaatagatgaatttctaccgttgaaatctctctctaggttcttctcgctatgtctccttatctct 33721343  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 3310866 - 3310914
Alignment:
Q  177 aattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaa 225  Q
    |||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  3310866 aattagagcataaatttaacataaattcattaaaagatcgtgaaaacaa 3310914  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 16250442 - 16250385
Alignment:
Q  236 acaagcccttcactacccatatgttcataaaacccttatg-tgaatagagactccccc 292  Q
    |||| |||||| ||||||| ||||||||| |||||||||| |||||||||||||||||    
T  16250442 acaaacccttcgctacccacatgttcatacaacccttatgatgaatagagactccccc 16250385  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 18147697 - 18147605
Alignment:
Q  266 aacccttatg-tgaatagagactccccca--tacctctagtttgcagaatt-gatgattttctatggtgaaatctctctctaggttcttctcg 354  Q
    |||||||||| |||||||||||||||||   ||||||||||| | |||||| ||||| || ||| || ||||||||||||||| |||||||||    
T  18147697 aacccttatgatgaatagagactccccccattacctctagttcggagaatttgatgaattcctacggcgaaatctctctctagattcttctcg 18147605  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 372
Target Start/End: Original strand, 32945329 - 32945455
Alignment:
Q  245 tcactacccatatgttcataaaacccttatg-tgaatagagact-cccccatacctctag-tttgcagaattgatgattttctatggtgaaatctctctc 341  Q
    |||||||||||||||||||| || ||||||| |||||| | ||| ||||| ||||||||| |||||  |||||||||||| ||| | |||||  ||||||    
T  32945329 tcactacccatatgttcatacaa-ccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacgttgaaa--tctctc 32945424  T
Q  342 taggttcttctcgctatttctctttgtctct 372  Q
    || |||||||| |||||| ||||||| ||||    
T  32945425 taagttcttctggctattcctctttgcctct 32945455  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 13695830 - 13695916
Alignment:
Q  241 cccttcactacccatatgttcataaaacccttatg-tgaatagagactc-ccccatacctctagtttgcagaattgatgattttcta 325  Q
    |||||||||||| ||||||||||  | ||||| || |||| | |||||| |||| |||||||||||||| |||||||||| ||||||    
T  13695830 cccttcactaccgatatgttcatgcatcccttgtggtgaagatagactctccccttacctctagtttgccgaattgatgaatttcta 13695916  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 13696038 - 13696124
Alignment:
Q  241 cccttcactacccatatgttcataaaacccttatg-tgaatagagactc-ccccatacctctagtttgcagaattgatgattttcta 325  Q
    |||||||||||||||||||||||  | ||||| || |||| | |||||| |||| | |||||||||||| |||||||||| ||||||    
T  13696038 cccttcactacccatatgttcatgcatcccttgtgatgaagatagactctccccttccctctagtttgccgaattgatgaatttcta 13696124  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 34706801 - 34706856
Alignment:
Q  172 caacaaattagagcacaaatttaacatg--aattcattaaaagatcatgaaaacaa 225  Q
    ||||||| |||| ||||||||||||||   ||||||||||||||| ||||||||||    
T  34706801 caacaaagtagaacacaaatttaacatctcaattcattaaaagattatgaaaacaa 34706856  T

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Target: scaffold0281 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 241 - 372
Target Start/End: Original strand, 1821 - 1954
Alignment:
Q  241 cccttcactacccatatgttcataaaacccttatg-tgaatagagactcccc-catacctctagtttgcagaattgatgattttctatggtgaaatctct 338  Q
    |||||| ||||| |||| |||||| |||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  1821 cccttcgctacctatatattcatacaacccttatggtaaatagagactccccccatacctctagtttgcagaattgatgatttcctacggtgaaatctct 1920  T
Q  339 ctctaggttcttctcgctatttctctttgtctct 372  Q
    || ||||||||||||||||||  |||||||||||    
T  1921 ctgtaggttcttctcgctattcttctttgtctct 1954  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 176 - 372
Target Start/End: Complemental strand, 25126416 - 25126219
Alignment:
Q  176 aaattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaattaaaagaaa-acaagcccttcactacccatatgttcataaaacccttat 274  Q
    |||||||||||| |||| |||||||||| |||||||||||| ||||||||  || | ||| | ||  ||||||||||| ||||||| ||| |||||||||    
T  25126416 aaattagagcacgaattgaacatgaatttattaaaagatcaagaaaacaaagaagaaaaacataaatccttcactacctatatgtttatacaacccttat 25126317  T
Q  275 gtgaatagagactccccc-atacctctagttt-gcagaattgatgattttctatggtgaaatctctctctaggttcttctcgctatttctctttgtctct 372  Q
    |  ||||||||||||||| ||||||||||||| ||  |||||||||||| ||| | | |||| |||||||||||||||||||||||| ||||||| ||||    
T  25126316 g--aatagagactccccccatacctctagttttgcgaaattgatgatttcctacgttcaaatttctctctaggttcttctcgctattcctctttgcctct 25126219  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 294 - 372
Target Start/End: Original strand, 23974154 - 23974232
Alignment:
Q  294 tacctctagtttgcagaattgatgattttctatggtgaaatctctctctaggttcttctcgctatttctctttgtctct 372  Q
    |||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||| ||||||||||||    
T  23974154 tacctctagtttgcagaattgatgatttcctacggtgaaatctttctctaggttcttctcgctattcctctttgtctct 23974232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 232 - 358
Target Start/End: Complemental strand, 19612046 - 19611919
Alignment:
Q  232 gaaaacaagcccttcactacccatatgttcataaaacccttatgtgaatagagactccccc-atacctctagttt-gcagaattgatgattttctatggt 329  Q
    ||||||||  ||||||||||| ||||||||||  |||| |||||||||||||||||||||| ||||||||| ||| ||  |||||||||||  ||| | |    
T  19612046 gaaaacaaaaccttcactacctatatgttcatgcaacc-ttatgtgaatagagactccccccatacctctaattttgcgaaattgatgattccctacgat 19611948  T
Q  330 gaaatctctctctaggttcttctcgctat 358  Q
    |||||||||||||||||||||||||||||    
T  19611947 gaaatctctctctaggttcttctcgctat 19611919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 358
Target Start/End: Complemental strand, 18552493 - 18552310
Alignment:
Q  175 caaattagagcacaaatttaacatgaattcattaaaagatcatg-aaaacaattaaaagaaaacaagcccttcactacccatatgttcataaaaccctta 273  Q
    ||||||||||||| |||| ||||||||||| |||||||| |||| ||||||||  ||| | ||||  | ||||||||||| |||| ||||| ||||||||    
T  18552493 caaattagagcacgaattaaacatgaattcgttaaaagaacatgcaaaacaatataaa-acaaca--ctcttcactacccgtatgctcatacaaccctta 18552397  T
Q  274 tg-tgaatagagactcccccatacctctagtttgcagaatt-gatgattttctatggtgaaatctctctctaggttcttctcgctat 358  Q
    || |||| |||||||||||  ||| |||||||| |  |||| ||||| || ||||| |||||| |||||| ||||||||||| ||||    
T  18552396 tgctgaaaagagactccccattacttctagtttactaaatttgatgaattactatgatgaaatatctctccaggttcttctcactat 18552310  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 318
Target Start/End: Original strand, 14645677 - 14645805
Alignment:
Q  190 atttaacatgaattcattaaaagatcatgaaaacaattaaaagaaaacaagccctt-cactacccatatgttcataaaacccttatgtgaatagagactc 288  Q
    ||||||||| ||||||||| || ||||| |||| || |||   |||||||  |||| ||||||||| ||||||||| |||| |||| |||||||||||||    
T  14645677 atttaacataaattcattataaaatcataaaaaaaaataaggcaaaacaaaacctttcactacccagatgttcatacaacc-ttatttgaatagagactc 14645775  T
Q  289 ccccatacctctagtttgcagaattgatga 318  Q
    |||| |||||||||||| | ||||||||||    
T  14645776 ccccttacctctagttttccgaattgatga 14645805  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 370
Target Start/End: Original strand, 15706660 - 15706790
Alignment:
Q  243 cttcactacccatatgttcataaaacccttatg-tgaatagagactcccccat-acctctagttt-gcagaattgatgattttctatggtgaaatctctc 339  Q
    ||||||||| ||| || ||||| ||| |||| | ||||||||||||||||||| ||||||||||| ||  ||||||||||||  || | ||||||||| |    
T  15706660 cttcactactcatgtgatcatacaactcttacggtgaatagagactcccccattacctctagttttgcgaaattgatgatttcttacgttgaaatctccc 15706759  T
Q  340 tctaggttcttctcgctatttctctttgtct 370  Q
    | ||| |||||||||||||| ||||||||||    
T  15706760 tttagattcttctcgctattcctctttgtct 15706790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 44278085 - 44277959
Alignment:
Q  168 acaacaacaaattagagcacaaatttaacatgaattcatt-aaaagatcatgaaaacaattaaaagaaa---acaagcccttcactacccatatgttcat 263  Q
    ||||||||||||||||| | |||||||||||||||||||| |||| | |||  ||||||  |||| |||   |||| |||||||||||||||||||||||    
T  44278085 acaacaacaaattagagtataaatttaacatgaattcattaaaaaaaacatataaacaaagaaaaaaaaaacacaaacccttcactacccatatgttcat 44277986  T
Q  264 aaaacccttatgtgaatagagactcccc 291  Q
    | |||||   |||||| |||||||||||    
T  44277985 ataaccc-actgtgaagagagactcccc 44277959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 340
Target Start/End: Original strand, 11153814 - 11153891
Alignment:
Q  266 aacccttatg-tgaatagagactccccca-tacctctagtttgcagaa-ttgatgattttctatggtgaaatctctct 340  Q
    |||||||||| |||||||||||||||||| ||||||||||| | |||| ||||||| ||  || ||||||||||||||    
T  11153814 aacccttatgatgaatagagactcccccattacctctagttcgaagaatttgatgaattcatacggtgaaatctctct 11153891  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 185 - 372
Target Start/End: Original strand, 3592994 - 3593182
Alignment:
Q  185 cacaaatttaacatgaattcattaaaagatcatgaaaa-caattaaaagaaaacaagcccttcactacccatatgttcataaaacccttatg-tgaatag 282  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||  | | || |||| |||||| | |||| ||||| |||||||||| |||||||    
T  3592994 cacaaatttaacatgaattcattaaaagatcatgaaaaacaatgtaaa--acataaaccctgcactacacgtatgatcatacaacccttatgatgaatag 3593091  T
Q  283 agactc-ccccatacctctagtttgcagaattgatgattttctatggtgaaatctctctctaggttcttctcgctatttctctttgtctct 372  Q
    |||||| |||| |||||||||||||| ||||||||||||| ||| || ||||||||||  |||||| ||||||||||| ||| ||| ||||    
T  3593092 agactctccccttacctctagtttgccgaattgatgatttcctacggagaaatctctccataggttattctcgctattcctccttgcctct 3593182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 168 - 289
Target Start/End: Complemental strand, 32657390 - 32657267
Alignment:
Q  168 acaacaacaaattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaattaa-aagaaa-acaagcccttcactacccatatgttcataa 265  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  || |||||| |||    ||| ||||||||||||||||||     
T  32657390 acaacaaccaattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaaagaagaagaaacacagattctttactacccatatgttcatac 32657291  T
Q  266 aacccttatgtgaatagagactcc 289  Q
    ||||||||||||||||||||||||    
T  32657290 aacccttatgtgaatagagactcc 32657267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 363
Target Start/End: Complemental strand, 18705707 - 18705516
Alignment:
Q  172 caacaaattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaattaaaagaaa-acaagcccttcactacccatatgttcataaaaccc 270  Q
    |||||| ||||| ||  |||||||||| |||| || |||||||||||||||||   |||| ||| |||| ||||||||||||| |||||||||| ||||     
T  18705707 caacaatttagaacatgaatttaacatcaatttatcaaaagatcatgaaaacag--aaaataaacacaaacccttcactacccttatgttcatacaacc- 18705611  T
Q  271 ttatg-tgaatagagactcccccatacctctagtttgcagaa-ttgatgattttctatggtgaaatctctctctaggttcttctcgctatttctc 363  Q
    ||||| | ||||||||||||||||||||||||||||   ||| ||||||||||  |||||||||||||||||||| ||||||||| |||| ||||    
T  18705610 ttatggtaaatagagactcccccatacctctagttttacgaaattgatgatttcatatggtgaaatctctctctacgttcttctcactatgtctc 18705516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 168 - 358
Target Start/End: Complemental strand, 3262442 - 3262249
Alignment:
Q  168 acaacaacaaattagagcacaaatttaacatgaattcatt-aaaagatcatgaaaacaattaaaagaaaacaag-cccttcactacccatatgttcataa 265  Q
    |||||| ||||||||||||  ||||| ||||||||||||| |||| ||||| |||| || |||   |||||||  ||||||||||||||||||||||||     
T  3262442 acaacatcaaattagagcatgaatttgacatgaattcattgaaaaaatcataaaaaaaaataatgaaaaacaaaacccttcactacccatatgttcatac 3262343  T
Q  266 aacccttat-gtgaatagagactcccccatacctctagtttgcagaat-tgatgattttctatggtgaaatctctctctaggttcttctcgctat 358  Q
    || |||||| |||||||||||| | ||| ||||| ||||||  ||||| | ||||||| ||| | |||||||||||||||  |||| ||||||||    
T  3262342 aatccttatggtgaatagagacgctcccttacct-tagtttatagaatctaatgatttcctacgatgaaatctctctctacattctcctcgctat 3262249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 15777412 - 15777330
Alignment:
Q  285 actcccccatacctctagtttgcagaattgatgattttctatggtgaaatctctctctaggttcttctcgctatttctctttg 367  Q
    |||||||| ||||||||||||||| || |||| | || ||| ||||||||||||||||||||||||||||||||| |||||||    
T  15777412 actcccccttacctctagtttgcaaaagtgataaattcctacggtgaaatctctctctaggttcttctcgctattcctctttg 15777330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 228 - 342
Target Start/End: Complemental strand, 18534549 - 18534434
Alignment:
Q  228 aaaagaaaacaagcccttcactacccatatgttcataaaacccttatg-tgaatagagactcccccatacctctag-tttgcagaattgatgattttcta 325  Q
    |||| |||| || |||||||||||| ||||||||||| || ||||||| ||||||||||||||||| ||||||||| |||||  |||||||||||| |||    
T  18534549 aaaaaaaaaaaaacccttcactacc-atatgttcatacaatccttatggtgaatagagactcccccttacctctagttttgcgaaattgatgatttccta 18534451  T
Q  326 tggtgaaatctctctct 342  Q
    ||||  |||||||||||    
T  18534450 tggttgaatctctctct 18534434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 292
Target Start/End: Complemental strand, 24178025 - 24177926
Alignment:
Q  193 taacatgaattcattaaaagatcatgaaaa-caattaaaagaaaacaagcccttcactacccatatgttcataaaacccttat-gtgaatagagactccc 290  Q
    |||||||||||||||||||||||||||||| ||||  |||  ||| |  |||||||||||||||||||||||| || |||||| ||||||||||||||||    
T  24178025 taacatgaattcattaaaagatcatgaaaaacaatggaaaataaaaa--cccttcactacccatatgttcatagaatccttatggtgaatagagactccc 24177928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 352
Target Start/End: Complemental strand, 30993352 - 30993240
Alignment:
Q  243 cttcactacccatatgttcataaaacccttat-gtgaatagagact-cccccatacctctagtttgcagaa-ttgatgattttctatggtgaaatctctc 339  Q
    |||| ||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||||| |||| ||||||| ||  ||  ||||| ||||||    
T  30993352 cttccctacccatatgttcatacaacccttatggtgaatagagactccccccttacctctagtttggagaatttgatgaattcatacagtgaagtctctc 30993253  T
Q  340 tctaggttcttct 352  Q
    || ||||||||||    
T  30993252 tccaggttcttct 30993240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 367
Target Start/End: Original strand, 3290608 - 3290737
Alignment:
Q  241 cccttcactacccatatgttcataaaacccttatg----tgaatagagactcccccatacctctagttt-gcagaattgatgattttctatggtgaaatc 335  Q
    |||||||||| ||||||||||||| | ||| ||||    |||||| |||||||||| ||| |||||||| ||  |||||||||||| ||| ||| |||||    
T  3290608 cccttcactatccatatgttcatacagcccctatgatgatgaata-agactcccccttac-tctagttttgcgaaattgatgatttcctacggttaaatc 3290705  T
Q  336 tctctctaggttcttctcgctatttctctttg 367  Q
     ||||||||||||||||||||||| |||||||    
T  3290706 cctctctaggttcttctcgctattcctctttg 3290737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 3483604 - 3483706
Alignment:
Q  241 cccttcactacccatatgttcataaaacccttatgtgaatagagactcc-cccatacctctagtttgcagaa-ttgatgattttctatggtgaaatctct 338  Q
    |||||||||||||||| | ||||| ||||||||||| || ||||||||| ||| ||||||||||||| |||| ||||||| |||||||| | | ||||||    
T  3483604 cccttcactacccatacgatcatacaacccttatgtaaacagagactcctcccttacctctagtttggagaatttgatgaatttctatgataatatctct 3483703  T
Q  339 ctc 341  Q
    |||    
T  3483704 ctc 3483706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 299
Target Start/End: Original strand, 32658576 - 32658705
Alignment:
Q  176 aaattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaattaaaagaaaa------caagcccttcactacccatatgttcataaaacc 269  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| ||  |||  ||||      ||| |  |||||||  |||||||||||| ||||    
T  32658576 aaattagagcacgaatttaaaatgaattcattaaaagatcatgaaaataaaaaaataaaaaataacgcaaactgttcactaatcatatgttcatacaacc 32658675  T
Q  270 cttatgtgaatagagactcccccatacctc 299  Q
    |||| ||||||||||||| |||| ||||||    
T  32658676 cttacgtgaatagagacttccccttacctc 32658705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 172 - 372
Target Start/End: Original strand, 40391280 - 40391484
Alignment:
Q  172 caacaaattagagcacaaatttaacatg--aattcattaaaagatcatgaaaacaattaaaagaaa-acaagcccttcactacccatatgttcataaaac 268  Q
    ||||||| |||||||||||||||||||   ||||||||||||||| | ||||||||  || | ||| |||| ||||||||||| |||||||| ||| |||    
T  40391280 caacaaagtagagcacaaatttaacatctcaattcattaaaagattaagaaaacaaagaagaaaaacacaaacccttcactactcatatgtttatataac 40391379  T
Q  269 ccttatg-tgaatagagactcccccatacctctagttt-gcagaattgatgattttctatggtgaaatctctctctaggttcttctcgctatttctcttt 366  Q
    ||||| | |||||| | |||||||| |||||||||||| ||  |||||||| ||||||| | |||||||||||| ||||||||||||||||||  |||||    
T  40391380 ccttacgatgaataaa-actcccccttacctctagttttgcgaaattgatggttttctaagttgaaatctctctttaggttcttctcgctattcatcttt 40391478  T
Q  367 gtctct 372  Q
    ||||||    
T  40391479 gtctct 40391484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 241 - 372
Target Start/End: Original strand, 17290600 - 17290734
Alignment:
Q  241 cccttcactacccatatgttcataaaacccttatg-tgaatagagactcccccat-acctctagtttgcagaa-ttgatgattttctatggtgaaatctc 337  Q
    |||||||| |||||||| |||||| |||||||||| ||||||||||||||||| | ||||||| |||  |||| ||||| ||||  || ||| |||||||    
T  17290600 cccttcacaacccatatattcatacaacccttatggtgaatagagactccccccttacctctaattttgagaaattgataatttcatacggtaaaatctc 17290699  T
Q  338 tctctaggttcttctcgctatttctctttgtctct 372  Q
    ||||||||||||||||| |||| ||| ||||||||    
T  17290700 tctctaggttcttctcgttattcctccttgtctct 17290734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 315 - 358
Target Start/End: Original strand, 42147468 - 42147511
Alignment:
Q  315 atgattttctatggtgaaatctctctctaggttcttctcgctat 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42147468 atgattttctatggtgaaatctctctctaggttcttctcgctat 42147511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 42147389 - 42147470
Alignment:
Q  193 taacatgaattcattaaaagatcatg-aaaacaattaaaagaaaacaagcccttcactacccatatgttcataaaacccttatg 275  Q
    |||||||||||||||||||||||||| |||||||| ||||  ||| ||  ||||||||||||||||||||||| ||| ||||||    
T  42147389 taacatgaattcattaaaagatcatgaaaaacaatgaaaaataaaaaa--ccttcactacccatatgttcatacaacacttatg 42147470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 9883636 - 9883692
Alignment:
Q  266 aacccttatg-tgaatagagactcccccatacctctagtttgcagaattgatgattt 321  Q
    |||||||||| | |||||| |||||||||||||||||||||| ||||||||||||||    
T  9883636 aacccttatggtaaatagaaactcccccatacctctagtttgtagaattgatgattt 9883692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 6465713 - 6465791
Alignment:
Q  275 gtgaatagagactcccccatacctctagtttgcagaatt-gatgattttctatggtgaaatctctctctaggttcttct 352  Q
    ||||||||||||||||   ||||||||||| | |||||| ||||| ||||||| || ||||||||||| ||||||||||    
T  6465713 gtgaatagagactcccttttacctctagttcggagaatttgatgaatttctatagtaaaatctctctccaggttcttct 6465791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 177 - 358
Target Start/End: Complemental strand, 35673 - 35487
Alignment:
Q  177 aattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaat--taaaagaaaacaagcccttcactacccatatgttcataaaacccttat 274  Q
    ||||||||||||||||||||||||||||  ||||||||| | | || |||  ||||| |||  || || ||||||||||||||||| ||| ||||||||     
T  35673 aattagagcacaaatttaacatgaattcggtaaaagatcgtaagaaaaataataaaaaaaataaaacctttcactacccatatgttgatacaacccttac 35574  T
Q  275 g-tgaatagagactcccccat-acctctagtttgcagaatt-gatgattttctatggtgaaatctctctctaggttcttctcgctat 358  Q
    | ||||||||||||||||| | ||||||||||||  ||||| ||||| || ||| ||||||||||||||||| |||| ||| |||||    
T  35573 gctgaatagagactccccccttacctctagtttgtcgaatttgatgagttcctacggtgaaatctctctctacgttcctcttgctat 35487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 16093511 - 16093621
Alignment:
Q  251 cccatatgttcataaaacccttatg-tgaatagagactcccc-catacctctagtttgcagaattgatgattttctatggtgaaatctctctctaggttc 348  Q
    |||||||| | ||| |||||||||| |||||||||||||||| | ||||||||||||||| || |||||| ||||||  |||||||||||||||||||||    
T  16093511 cccatatgattatacaacccttatggtgaatagagactcccctcttacctctagtttgcaaaagtgatgaatttctacagtgaaatctctctctaggttc 16093610  T
Q  349 ttctcgctatt 359  Q
     ||||||||||    
T  16093611 ctctcgctatt 16093621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 289 - 372
Target Start/End: Complemental strand, 32623669 - 32623585
Alignment:
Q  289 ccccatacctctagttt-gcagaattgatgattttctatggtgaaatctctctctaggttcttctcgctatttctctttgtctct 372  Q
    |||| |||||||||||| ||| |||||||||||||||| |||||||||||||||||| ||||||||| |||| ||||||| ||||    
T  32623669 ccccctacctctagttttgcaaaattgatgattttctacggtgaaatctctctctagattcttctcgttattcctctttgcctct 32623585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 27387000 - 27386938
Alignment:
Q  294 tacctctagttt-gcagaattgatgattttctatggtgaaatctctctctaggttcttctcgc 355  Q
    |||||||||||| ||  |||| ||||||||||| |||||||||||||||||||||||||||||    
T  27387000 tacctctagttttgcgaaattaatgattttctacggtgaaatctctctctaggttcttctcgc 27386938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 4709 - 4793
Alignment:
Q  175 caaattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaattaa-aagaaaacaagcccttcactacccatatg 258  Q
    |||||||||||||||||||||||||||||||| |||| | |||||||||||  || || || |||| ||||||||||||||||||    
T  4709 caaattagagcacaaatttaacatgaattcatcaaaaaaacatgaaaacaaggaagaaaaacacaaacccttcactacccatatg 4793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 171558 - 171485
Alignment:
Q  244 ttcactacccatatgttcataaaacccttatgtgaatagagactcccccatacctctagtttgcagaattgatga 318  Q
    ||||||||||| ||||||||| |||| |||| ||||||||||||||||| |||||||||||| | ||||||||||    
T  171558 ttcactacccagatgttcatacaacc-ttatttgaatagagactcccccttacctctagttttccgaattgatga 171485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 358
Target Start/End: Original strand, 182968 - 183039
Alignment:
Q  288 cccccatacctctagtttgcagaatt-gatgattttctatggtgaaatctctctctaggttcttctcgctat 358  Q
    ||||| |||||||||||||||||||| |||||||||||| |||||||||||| |||| |||| |||| ||||    
T  182968 cccccttacctctagtttgcagaatttgatgattttctacggtgaaatctctatctacgttcctctccctat 183039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 48232 - 48310
Alignment:
Q  242 ccttcactacccatatgttcataaaacccttat-gtgaatagagact-cccccatacctctagtttgcagaattgatga 318  Q
    ||||||||||||||||| ||||| || |||||| ||||||||||||| ||||| |||||||||||| | ||||||||||    
T  48232 ccttcactacccatatgatcatacaatccttatggtgaatagagactccccccttacctctagttttccgaattgatga 48310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 275 - 352
Target Start/End: Complemental strand, 39436039 - 39435961
Alignment:
Q  275 gtgaatagagactcccccatacctctagtttgcagaa-ttgatgattttctatggtgaaatctctctctaggttcttct 352  Q
    |||||||||||||||||| ||||||||||||   ||| |||||||||| ||| |||||||||||||| ||| |||||||    
T  39436039 gtgaatagagactcccccttacctctagttttgtgaaattgatgatttcctacggtgaaatctctctttagattcttct 39435961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 39176442 - 39176519
Alignment:
Q  266 aacccttatg-tgaatagagact-cccccat-acctctagttt-gcagaattgatgattttctatggtgaaatctctc 339  Q
    |||||||||| |||||||||||| ||||||| ||||||||||| ||  ||||||||||||||||||||||||||||||    
T  39176442 aacccttatgatgaatagagacttcccccattacctctagttttgcgaaattgatgattttctatggtgaaatctctc 39176519  T

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Target: scaffold0815 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 1252 - 1352
Alignment:
Q  168 acaacaacaaattagagcacaaatttaacatgaattcattaaaagatcatgaaaacaattaaaagaaaacaagcccttcactacccatatgttcataaaa 267  Q
    ||||||||||| |||||||| ||||  |||| |||||||||||||||||||||||  | || || | |||||  ||||||||||||||||| ||||| ||    
T  1252 acaacaacaaactagagcacgaattcgacattaattcattaaaagatcatgaaaaacaatagaaaacaacaa-tccttcactacccatatggtcatacaa 1350  T
Q  268 cc 269  Q
    ||    
T  1351 cc 1352  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 19769123 - 19769031
Alignment:
Q  266 aacccttatg-tgaatagagactccccca--tacctctagtttgcagaatt-gatgattttctatggtgaaatctctctctaggttcttctcg 354  Q
    |||||||||| |||||||||||||||||   ||||||||||| | |||||| ||||| || ||| |||||||||||||||||| |||||||||    
T  19769123 aacccttatgatgaatagagactccccccattacctctagttcgaagaatttgatgaattcctacggtgaaatctctctctagattcttctcg 19769031  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 372
Target Start/End: Original strand, 9548696 - 9548863
Alignment:
Q  205 attaaaagatcatgaaaacaattaaaagaaaacaagcc-cttcactacccatatgttcataaaacccttatg-tgaatagagactcccccat-acctcta 301  Q
    ||||||||||||||||||  |  ||||||||||||  | |||||||||| ||||| ||||| |||||||||| |||| |||||||||||| | | |||||    
T  9548696 attaaaagatcatgaaaaaca--aaaagaaaacaaaactcttcactacc-atatgatcatacaacccttatgatgaacagagactccccccttatctcta 9548792  T
Q  302 gttt--gcagaattgatgattttctatggtgaaatctctctctaggttcttctcgctatttctctttgtctct 372  Q
    ||||  ||  |||||||||||| ||| |||||||  |||||||| ||| ||||||||||  ||| ||||||||    
T  9548793 gtttttgcgaaattgatgatttcctacggtgaaa--tctctctacgtttttctcgctatgcctccttgtctct 9548863  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 358
Target Start/End: Complemental strand, 12987162 - 12987076
Alignment:
Q  275 gtgaatagagactccccc--atacctctagtttgcagaa-ttgatgattttctatggtgaaatctctctctaggttcttctcgctat 358  Q
    ||||||||||||||||||  ||| |||||||||   ||| |||||||||   || ||||||||||||||||||||||||||||||||    
T  12987162 gtgaatagagactcccccccatatctctagttttttgaaattgatgattccatacggtgaaatctctctctaggttcttctcgctat 12987076  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 366
Target Start/End: Complemental strand, 19566996 - 19566869
Alignment:
Q  243 cttcactacccatatgttcataaaacccttat-gtgaatagagact--cccccatacctctag-tttgcagaattgatgattttctatggtgaaatctct 338  Q
    |||||||||||||||||||| | ||||||||| ||||||| |||||  ||||| | ||||||| ||||| |||| ||||| |||||| |||  |||||||    
T  19566996 cttcactacccatatgttcacacaacccttatggtgaatacagactcccccccttgcctctagttttgctgaatagatgaatttctacggttgaatctct 19566897  T
Q  339 ctctaggttcttctcgctatttctcttt 366  Q
    | ||| | ||||||| || | |||||||    
T  19566896 ccctaagctcttctctctttgtctcttt 19566869  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 354
Target Start/End: Original strand, 19892891 - 19892961
Alignment:
Q  285 actcccccatacctctagtttgcagaa-ttgatgattttctatggtgaaatctctctctaggttcttctcg 354  Q
    |||||||| ||||||||||| | |||| ||||||| |||||| | |||||| ||||||||| |||||||||    
T  19892891 actcccccttacctctagttcggagaatttgatgaatttctacgatgaaatttctctctagattcttctcg 19892961  T

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Target: scaffold0323 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 16222 - 16288
Alignment:
Q  241 cccttcactacccatatgttcataaaacccttat-gtgaatagagac-tcccccatacctctagttt 305  Q
    |||||||||||||| ||| ||||| ||||||| | |||||||||||| |||||| ||||||||||||    
T  16222 cccttcactacccacatgatcatacaacccttttggtgaatagagacttcccccttacctctagttt 16288  T

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