View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11708_low_17 (Length: 376)
Name: NF11708_low_17
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11708_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 14 - 354
Target Start/End: Original strand, 49746495 - 49746834
Alignment:
| Q |
14 |
cagtcttcactcaaagagtgagctctctcgactttagcacaagtttttgtaacattctcccatactttaaaaacacatcaataattaataagtataattt |
113 |
Q |
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| T |
49746495 |
cagtcttcaatcaaagagtgagctctctcgactttagcacaagtttttgtaacatcctcccatactttaaaaatacatcaataattaataaggataattt |
49746594 |
T |
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| Q |
114 |
gataaaagaattactctattctttataataattgtannnnnnnaatgtgttaaaaatcatacaagatattcattttgaaaaatgaagaagtactaagatt |
213 |
Q |
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| T |
49746595 |
gataaaagaattactctattctttataataattgta-ttttttaatgtgttaaaaatcatagaagatattcattttgaaaaatgaagaagtactaagatt |
49746693 |
T |
|
| Q |
214 |
gatatatacttcattcattcgttgttaattataagaccatttacaaaaaattatttgtctcttccttcnnnnnnnntgtgtttttaaatataagattgtc |
313 |
Q |
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| T |
49746694 |
gatatatacttcattcattcgttgttaattataagaccatttacaaaaaaatatttgtctcttccttaaaaaaaaatgtgtctttaaatataagattgtc |
49746793 |
T |
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| Q |
314 |
tacaaatttttaattgcattcagtactcttttttcaactat |
354 |
Q |
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| T |
49746794 |
tacaaatttttaattgcattcagcactcttttttcaactat |
49746834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 41178167 - 41178114
Alignment:
| Q |
301 |
atataagattgtctacaaatttttaattgcattcagtactcttttttcaactat |
354 |
Q |
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| T |
41178167 |
atataaaattgtctacaaatttttatatgcattcattactcttttctcatctat |
41178114 |
T |
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