View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11708_low_19 (Length: 342)

Name: NF11708_low_19
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11708_low_19
NF11708_low_19
[»] chr1 (2 HSPs)
chr1 (8-321)||(46114020-46114333)
chr1 (39-155)||(23480961-23481077)
[»] chr3 (5 HSPs)
chr3 (43-100)||(21799905-21799962)
chr3 (39-155)||(17757668-17757784)
chr3 (39-155)||(19058988-19059104)
chr3 (61-155)||(53047240-53047334)
chr3 (61-133)||(2702153-2702225)
[»] chr7 (5 HSPs)
chr7 (43-100)||(18415460-18415517)
chr7 (39-155)||(11642429-11642545)
chr7 (39-155)||(16375743-16375859)
chr7 (39-155)||(45286428-45286544)
chr7 (39-155)||(9141296-9141412)
[»] chr5 (3 HSPs)
chr5 (43-100)||(21000820-21000877)
chr5 (39-155)||(19123168-19123284)
chr5 (39-155)||(31486294-31486410)
[»] chr8 (4 HSPs)
chr8 (39-155)||(604171-604287)
chr8 (61-155)||(30437170-30437264)
chr8 (159-228)||(15880895-15880964)
chr8 (39-155)||(1199515-1199631)
[»] chr4 (2 HSPs)
chr4 (46-100)||(50232080-50232134)
chr4 (8-155)||(47428045-47428197)
[»] scaffold1155 (1 HSPs)
scaffold1155 (39-149)||(787-897)
[»] scaffold0345 (1 HSPs)
scaffold0345 (39-149)||(9320-9430)
[»] scaffold0105 (1 HSPs)
scaffold0105 (39-149)||(29550-29660)
[»] scaffold0013 (1 HSPs)
scaffold0013 (39-155)||(104644-104760)
[»] chr6 (1 HSPs)
chr6 (39-155)||(1394026-1394142)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 321
Target Start/End: Original strand, 46114020 - 46114333
Alignment:
Q  8 gacgttggatgtaacattagtattttcaccaatcagtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatttcccatg 107  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  46114020 gacgttggatgtaacatcaatattttcaccaatcagtgatcagtatcttcaaaccttctatcgacgtaacactcgaaatagcaacatacaatttcccatg 46114119  T
Q  108 agagaatacatgtgttggaagatatatgccaacatttttaagtgactgacctaatagtcattacaaatgatatagcaaaaggaaattgcgttcttttaaa 207  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46114120 agagaatacatgtgttggaagatatacgccaacatttttaagtgactgacctaatagtcattacaaatgatatagcaaaaggaaattgtgttcttttaaa 46114219  T
Q  208 cttgaaagcaattctcatgtctcttggctctaaagattacctgtgtataaagacaatgtcaccaacacaacttccgaatataacctttccctcgagcaca 307  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||  ||||||||||| |||||||||||    
T  46114220 cttgaaagcaattctcatgtctcttggctctaaagataacctgggtataaagacaatgtcaccaacacaacttccagatataacctttacctcgagcaca 46114319  T
Q  308 tatcttttcattct 321  Q
    ||||||||||||||    
T  46114320 tatcttttcattct 46114333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 23480961 - 23481077
Alignment:
Q  39 atcagtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatatatgcca 138  Q
    ||||||||||| |||||| |  |||||||| || |||||||| ||||||||||||||||| |  || ||||| |||||| ||||||| |||||||  |||    
T  23480961 atcagtgatcaatatctttagtccttctctggatgtaactcttgaaatagcaacatacaactgtccttgagaaaatacaggtgttggtagatatacacca 23481060  T
Q  139 acatttttaagtgactg 155  Q
    |||| |||||| |||||    
T  23481061 acatgtttaagcgactg 23481077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 21799962 - 21799905
Alignment:
Q  43 gtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatt 100  Q
    ||||||| |||||||||||||||||| || ||||||||||||| ||||||||||||||    
T  21799962 gtgatcaatatcttcaaaccttctctagatgtaactctcgaaacagcaacatacaatt 21799905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 17757784 - 17757668
Alignment:
Q  39 atcagtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatatatgcca 138  Q
    |||||||||||  |||||||  |||||||| || |||||||| |||| | |||||||||| |  || ||||| |||||| ||||||| |||||||  |||    
T  17757784 atcagtgatcaacatcttcagtccttctctagatgtaactcttgaaacaacaacatacaactgtccgtgagaaaatacaggtgttggtagatatacacca 17757685  T
Q  139 acatttttaagtgactg 155  Q
    |||| |||||| |||||    
T  17757684 acatgtttaagcgactg 17757668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 19059104 - 19058988
Alignment:
Q  39 atcagtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatatatgcca 138  Q
    |||||||||||  |||||||  |||||||| || |||||||| |||| | |||||||||| |  || ||||| |||||| ||||||| |||||||  |||    
T  19059104 atcagtgatcaacatcttcagtccttctctagatgtaactcttgaaacaacaacatacaactgtccgtgagaaaatacaggtgttggtagatatacacca 19059005  T
Q  139 acatttttaagtgactg 155  Q
    |||| |||||| |||||    
T  19059004 acatgtttaagcgactg 19058988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 53047240 - 53047334
Alignment:
Q  61 ccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatatatgccaacatttttaagtgactg 155  Q
    |||||||| || |||||||| |||| |||||||||||  |  || ||||| ||||||| |||||| |||||||  ||||||| |||||| |||||    
T  53047240 ccttctctggatgtaactcttgaaacagcaacatacatctgtccgtgagaaaatacatttgttggtagatatacaccaacatgtttaagcgactg 53047334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 2702225 - 2702153
Alignment:
Q  61 ccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatata 133  Q
    |||||||| || |||||||| |||| |||||||||||| |  || ||||| |||||| ||||||| |||||||    
T  2702225 ccttctctagatgtaactcttgaaacagcaacatacaactgtccgtgagaaaatacaggtgttggtagatata 2702153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 18415460 - 18415517
Alignment:
Q  43 gtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatt 100  Q
    ||||||| ||||||||||||| |||| || ||||||||||||| ||||||||||||||    
T  18415460 gtgatcaatatcttcaaacctcctctagatgtaactctcgaaacagcaacatacaatt 18415517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 11642429 - 11642545
Alignment:
Q  39 atcagtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatatatgcca 138  Q
    ||||||||||| ||| || |  |||||||| || |||||||| |||| |||||||||||| |  || ||||| |||||| ||||||| |||||||  |||    
T  11642429 atcagtgatcaatatatttagtccttctctggatgtaactcttgaaacagcaacatacaactgtccgtgagaaaatacaggtgttggtagatatacacca 11642528  T
Q  139 acatttttaagtgactg 155  Q
    |||| |||||| |||||    
T  11642529 acatgtttaagcgactg 11642545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 16375743 - 16375859
Alignment:
Q  39 atcagtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatatatgcca 138  Q
    ||||||||||| |||||| |  |||||||| || |||||||| |||| | || |||||||||  || ||||| |||||| ||||||| |||||||  |||    
T  16375743 atcagtgatcaatatctttagtccttctctggatgtaactcttgaaacaacatcatacaattgtccttgagaaaatacaggtgttggtagatatacacca 16375842  T
Q  139 acatttttaagtgactg 155  Q
    |||| |||||| |||||    
T  16375843 acatgtttaagcgactg 16375859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 45286544 - 45286428
Alignment:
Q  39 atcagtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatatatgcca 138  Q
    ||||||||||| |||||| |  |||||||| || |||||||| |||| | |||||||||| |  || ||||| |||||| ||||||| |||||||  |||    
T  45286544 atcagtgatcaatatctttagtccttctctggatgtaactcttgaaacaacaacatacaactgtccgtgagaaaatacaggtgttggtagatatacacca 45286445  T
Q  139 acatttttaagtgactg 155  Q
    |||| |||||| |||||    
T  45286444 acatgtttaagcgactg 45286428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 9141296 - 9141412
Alignment:
Q  39 atcagtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatatatgcca 138  Q
    |||| |||||| |||||| |  |||||||| || |||||| | |||| ||||||||| || |  |||||||| |||||| ||||||| |||||||  |||    
T  9141296 atcaatgatcaatatctttagtccttctctagatgtaacttttgaaacagcaacatagaaatgtccatgagaaaatacaggtgttggtagatatacacca 9141395  T
Q  139 acatttttaagtgactg 155  Q
    ||||  |||||||||||    
T  9141396 acatgcttaagtgactg 9141412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 21000820 - 21000877
Alignment:
Q  43 gtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatt 100  Q
    ||||||| ||||||||||||| |||| || ||||||||||||| ||||||||||||||    
T  21000820 gtgatcaatatcttcaaacctcctctagatgtaactctcgaaacagcaacatacaatt 21000877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 19123284 - 19123168
Alignment:
Q  39 atcagtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatatatgcca 138  Q
    |||| |||||| |||||| |  |||||||| ||  ||||||| |||| |||||||||||| |  || ||||| |||||| ||||||| |||||||  |||    
T  19123284 atcaatgatcaatatctttagtccttctctggatataactcttgaaacagcaacatacaactgtccgtgagaaaatacaggtgttggtagatatacacca 19123185  T
Q  139 acatttttaagtgactg 155  Q
    |||| |||||| |||||    
T  19123184 acatgtttaagcgactg 19123168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 31486294 - 31486410
Alignment:
Q  39 atcagtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatatatgcca 138  Q
    ||||||||||| |||||| |  |||||||| || |||||||| |||| |||||||||||| |  ||  |||| |||||| ||||||| |||||||  | |    
T  31486294 atcagtgatcaatatctttagtccttctctggatgtaactcttgaaaaagcaacatacaactgtccgcgagaaaatacaggtgttggtagatatacacaa 31486393  T
Q  139 acatttttaagtgactg 155  Q
    |||| |||||| |||||    
T  31486394 acatgtttaagcgactg 31486410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 604171 - 604287
Alignment:
Q  39 atcagtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatatatgcca 138  Q
    ||||||||||| |||||| || |||||| | || |||||||| |||| |||||||||||| |  || | ||| |||||| ||||||| |||||||  |||    
T  604171 atcagtgatcaatatctttaatccttctttggatgtaactcttgaaacagcaacatacaactgtccgtaagaaaatacaggtgttggtagatatacacca 604270  T
Q  139 acatttttaagtgactg 155  Q
    |||| |||||| |||||    
T  604271 acatatttaagcgactg 604287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 30437170 - 30437264
Alignment:
Q  61 ccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatatatgccaacatttttaagtgactg 155  Q
    |||||||| || |||||||| ||||||||||||||||| |  |  ||||| |||||| ||||||| |||||||  ||||||| |||||| |||||    
T  30437170 ccttctctggatgtaactcttgaaatagcaacatacaactgtctgtgagaaaatacaggtgttggtagatatacaccaacatgtttaagcgactg 30437264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 15880895 - 15880964
Alignment:
Q  159 taatagtcattacaaatgatatagcaaaaggaaattgcgttcttttaaacttgaaagcaattctcatgtc 228  Q
    |||||||||||||| |||||| |   |||| ||||| | |||||| ||||||||||| ||||||||||||    
T  15880895 taatagtcattacatatgatacaaacaaagaaaattaccttctttaaaacttgaaaggaattctcatgtc 15880964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 1199631 - 1199515
Alignment:
Q  39 atcagtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatatatgcca 138  Q
    ||||||||||| |||||| |   ||||||| || |||||||| |||| |||||||||||| |   | ||||| |||||| ||||||| |||||||  | |    
T  1199631 atcagtgatcaatatctttagtacttctctggatgtaactcttgaaacagcaacatacaactgttcgtgagaaaatacaggtgttggtagatatacacaa 1199532  T
Q  139 acatttttaagtgactg 155  Q
    |||| |||||| |||||    
T  1199531 acatgtttaagcgactg 1199515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 50232080 - 50232134
Alignment:
Q  46 atcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatt 100  Q
    |||| ||||||||||||| |||| || ||||||||||||| ||||||||||||||    
T  50232080 atcaatatcttcaaacctcctctagatgtaactctcgaaacagcaacatacaatt 50232134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 47428045 - 47428197
Alignment:
Q  8 gacgttggatgtaacattagtattttcacca-----atcagtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatttc 102  Q
    |||||| ||||| |||||||||| |||||||     ||||||||||| |||||  |  |||||| | || |||||||| |||| | |||||||||| |      
T  47428045 gacgttagatgttacattagtatcttcaccatcttcatcagtgatcaatatctatagtccttctttggatgtaactcttgaaacaacaacatacaactgt 47428144  T
Q  103 ccatgagagaatacatgtgttggaagatatatgccaacatttttaagtgactg 155  Q
    || ||| | |||||| ||||||| |||||||  ||||||| |||||| |||||    
T  47428145 ccgtgaaaaaatacaggtgttggtagatatacaccaacatgtttaagcgactg 47428197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 149
Target Start/End: Original strand, 787 - 897
Alignment:
Q  39 atcagtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatatatgcca 138  Q
    ||||||||||| |||||| |  | |||||  || |||||||| |||| ||||||||||||||  || ||||| ||||||  |||||| |||||||  |||    
T  787 atcagtgatcaatatctttagtcattctccggatgtaactcttgaaacagcaacatacaattgtccgtgagaaaatacagatgttggtagatatacacca 886  T
Q  139 acatttttaag 149  Q
    |||| ||||||    
T  887 acatgtttaag 897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 149
Target Start/End: Complemental strand, 9430 - 9320
Alignment:
Q  39 atcagtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatatatgcca 138  Q
    ||||||||||| |||||| |  | |||||  || |||||||| |||| ||||||||||||||  || ||||| ||||||  |||||| |||||||  |||    
T  9430 atcagtgatcaatatctttagtcattctccggatgtaactcttgaaacagcaacatacaattgtccgtgagaaaatacagatgttggtagatatacacca 9331  T
Q  139 acatttttaag 149  Q
    |||| ||||||    
T  9330 acatgtttaag 9320  T

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Target: scaffold0105 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 149
Target Start/End: Original strand, 29550 - 29660
Alignment:
Q  39 atcagtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatatatgcca 138  Q
    ||||||||||| |||||| |  | |||||  || |||||||| |||| ||||||||||||||  || ||||| ||||||  |||||| |||||||  |||    
T  29550 atcagtgatcaatatctttagtcattctccggatgtaactcttgaaacagcaacatacaattgtccgtgagaaaatacagatgttggtagatatacacca 29649  T
Q  139 acatttttaag 149  Q
    |||| ||||||    
T  29650 acatgtttaag 29660  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 104760 - 104644
Alignment:
Q  39 atcagtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatatatgcca 138  Q
    ||||||||||| |||||| |  |||||||| || || ||||| |||| |  ||||||||| |  || ||||| |||||| ||||||| |||||||  |||    
T  104760 atcagtgatcaatatctttagtccttctctggatgttactcttgaaacaataacatacaactgtccgtgagaaaatacaggtgttggtagatatacacca 104661  T
Q  139 acatttttaagtgactg 155  Q
    |||| |||||| |||||    
T  104660 acatgtttaagcgactg 104644  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 1394142 - 1394026
Alignment:
Q  39 atcagtgatcagtatcttcaaaccttctctcgacgtaactctcgaaatagcaacatacaatttcccatgagagaatacatgtgttggaagatatatgcca 138  Q
    ||||||||||| ||| || |  |||||||| || |||||||| |||| |  ||||||||| |  || ||||| |||| | ||||||| |||||||  |||    
T  1394142 atcagtgatcaatatatttagtccttctctagatgtaactcttgaaacaataacatacaactgtccgtgagaaaatataggtgttggtagatatacacca 1394043  T
Q  139 acatttttaagtgactg 155  Q
    |||| ||||||||||||    
T  1394042 acatgtttaagtgactg 1394026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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