View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11708_low_22 (Length: 333)
Name: NF11708_low_22
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11708_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 7725258 - 7725096
Alignment:
| Q |
16 |
aggatgaacggatttgggcttacaaaggaaggtatttgtgtctttttggaaatggggtaaataacctagcaaataatttaattcaaaataacctatcaaa |
115 |
Q |
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| T |
7725258 |
aggatgaacggatttgggcttacaaaggaaggtatttgtgtctttttggaaatggggtaaataacctagcaaataatttaattcaaaataacctatcaaa |
7725159 |
T |
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| Q |
116 |
tagtttgatccaatttcttacacatcatcaatattttacacgtgaaaattactaacttataca |
178 |
Q |
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| T |
7725158 |
tagtttgatccaatttcttacacatcatcaatattttacacgtgaaaattactaacttataca |
7725096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 175 - 317
Target Start/End: Complemental strand, 7724956 - 7724815
Alignment:
| Q |
175 |
tacattatacagagacatatacatcaacaatctatcaaccattttgtgtataagtaagcataggggactagactaatatggtagtcgatcccttatgact |
274 |
Q |
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| T |
7724956 |
tacattatacagagacatatacatcaacaatctatcaaccattttgtgtataagtaagcataggggactagactaatatggtagtcgatccc-tatgact |
7724858 |
T |
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| Q |
275 |
gtaagaattattttagacctttctttatgtgatggactatttg |
317 |
Q |
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| T |
7724857 |
gtaagaattattttagacctttctttatgtgatggactatttg |
7724815 |
T |
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